genome.fa.s112.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  43  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9030202--9030259	9	6.3	9	75	11	55	13	10	13	62	1.55
9035078--9036193	162	6.9	160	74	9	763	33	8	13	44	1.75
9035096--9036274	322	3.6	316	78	9	1046	33	8	13	44	1.74
9037450--9037570	33	3.7	33	76	7	122	24	9	19	46	1.80
9037954--9038375	141	3.0	141	96	0	772	36	13	15	34	1.87
9038372--9038397	2	13.0	2	100	0	52	50	0	0	50	1.00
9039854--9039889	19	1.9	18	94	5	63	44	19	11	25	1.83
9040247--9040292	17	2.8	17	90	9	69	71	2	8	17	1.21
9040670--9040760	41	2.2	41	86	0	128	42	19	13	24	1.87
9040791--9040971	41	4.4	41	79	6	188	42	18	13	25	1.87
9040791--9040971	83	2.2	83	86	5	253	42	18	13	25	1.87
9041246--9041350	43	2.4	44	78	12	126	33	18	12	36	1.88
9041535--9041593	22	2.7	21	86	5	73	33	20	8	37	1.83
9042734--9042786	25	2.1	25	82	6	63	3	18	0	77	0.92
9042758--9042786	15	1.9	15	100	0	58	3	13	0	82	0.79
9042794--9042821	7	4.0	7	100	0	56	14	42	0	42	1.45
9044180--9044215	16	2.2	16	90	0	54	47	0	0	52	1.00
9046008--9046068	17	3.6	17	86	8	72	72	1	6	19	1.16
9046025--9046094	27	2.5	27	84	9	79	68	1	7	22	1.22
9046467--9046749	41	6.9	41	71	10	170	40	18	14	25	1.89
9046571--9046751	83	2.2	82	92	3	294	40	19	13	25	1.89
9046571--9046751	41	4.4	41	83	6	233	40	19	13	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9047034--9047130	43	2.2	44	78	10	110	34	17	11	37	1.86
9047050--9047131	43	1.9	42	85	7	112	36	15	10	36	1.83
9047315--9047373	22	2.7	22	86	0	73	35	20	6	37	1.79
9048537--9048568	14	2.1	16	88	11	50	0	12	0	87	0.54
9048530--9048590	25	2.4	26	86	5	88	3	19	0	77	0.91
9048581--9048615	7	5.0	7	100	0	70	14	42	0	42	1.45
9048576--9048626	21	2.5	20	71	9	57	11	31	0	56	1.35
9055095--9055132	8	4.8	8	84	9	51	21	2	2	73	1.07
9055762--9055797	19	1.9	18	94	5	63	47	19	11	22	1.80
9056145--9056209	17	3.9	17	81	16	66	70	1	6	21	1.17
9056123--9056289	4	41.8	4	67	18	50	70	1	4	23	1.15
9056145--9056294	33	4.6	32	74	18	105	70	2	4	23	1.14
9056157--9056294	17	8.5	16	74	15	99	71	1	3	23	1.11
9056184--9056296	29	4.0	28	78	15	101	71	1	1	24	1.05
9068697--9068744	23	2.1	23	88	11	73	39	6	6	47	1.54
9068857--9068908	24	2.3	22	75	15	52	46	0	0	53	1.00
9068959--9069024	31	2.3	27	80	12	71	60	1	4	33	1.26
9070068--9070103	5	7.2	5	100	0	72	80	0	0	19	0.71
9079432--9079533	36	3.0	33	80	7	132	28	4	32	34	1.79
9079433--9079557	18	6.9	18	73	13	105	28	4	35	32	1.78
9079511--9079553	21	2.0	21	95	0	77	27	2	44	25	1.66
9083339--9083387	25	1.9	26	91	4	82	40	10	2	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9083801--9083831	13	2.5	13	94	5	55	74	0	0	25	0.82
9083912--9083976	20	3.3	20	68	23	57	21	63	3	12	1.42
9083883--9084059	39	4.4	38	80	16	187	22	61	2	14	1.44
9083920--9084048	45	3.0	45	86	8	164	24	59	3	13	1.48
9084034--9084074	19	2.1	20	82	13	50	21	60	0	17	1.35
9088986--9089028	21	2.0	21	100	0	86	44	0	27	27	1.55
9090962--9090993	16	2.0	16	93	0	55	43	3	12	40	1.58
9093109--9093133	11	2.3	11	100	0	50	84	0	8	8	0.79
9111160--9111198	21	1.9	20	84	5	51	56	0	2	41	1.13
9115147--9115224	29	2.7	28	82	9	86	48	3	1	46	1.28
9115256--9115319	32	2.1	32	82	11	80	50	4	1	43	1.32
9121994--9122039	24	1.9	24	100	0	92	17	13	21	47	1.81
9133799--9134003	69	3.0	68	77	10	204	40	8	18	32	1.81
9134159--9134201	21	2.0	21	100	0	86	27	9	18	44	1.80
9139745--9139786	17	2.5	17	96	3	77	38	2	0	59	1.10
9139827--9139873	22	2.2	20	82	14	51	27	2	2	68	1.13
9140417--9140454	19	2.0	20	94	5	69	52	10	5	31	1.58
9142572--9142602	2	15.5	2	100	0	62	51	0	48	0	1.00
9148555--9148589	14	2.5	14	90	0	52	11	2	0	85	0.69
9151495--9151541	19	2.5	19	85	0	67	46	0	0	53	1.00
9151867--9151923	8	7.2	8	77	16	57	73	5	0	21	1.02
9151871--9151925	15	3.6	14	79	16	56	72	5	0	21	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9151880--9151941	25	2.5	24	87	7	88	72	11	0	16	1.12
9161026--9161080	28	2.0	28	100	0	110	30	10	21	36	1.88
9163944--9164798	48	17.7	49	76	5	648	30	10	20	38	1.86
9163996--9164690	145	4.8	144	80	4	704	29	10	21	37	1.88
9164900--9164924	10	2.5	10	100	0	50	92	0	8	0	0.40
9165064--9165137	28	2.7	27	81	4	85	22	18	20	37	1.94
9165226--9165306	10	8.4	10	79	18	84	79	11	0	9	0.95
9165226--9165295	29	2.6	27	86	13	99	77	12	0	10	1.00
9165234--9165312	29	2.8	29	84	7	92	79	10	0	10	0.93
9166158--9166242	37	2.3	37	83	0	98	31	28	18	21	1.97
9169150--9169379	22	10.5	22	71	11	150	43	9	3	44	1.52
9169388--9169449	22	2.8	22	90	0	88	41	14	3	40	1.62
9169446--9169625	22	8.2	22	69	8	89	34	8	7	48	1.63
9169635--9169722	22	4.0	22	72	8	81	38	11	5	44	1.64
9169597--9169684	22	4.0	22	75	11	83	39	10	3	46	1.55
9169600--9169692	43	2.1	45	82	9	113	36	10	4	48	1.58
9169635--9169692	21	2.7	21	78	10	64	36	10	5	48	1.60
9169860--9169922	22	2.9	22	95	0	108	38	11	3	47	1.55
9169866--9169933	22	3.1	22	89	0	64	39	8	4	47	1.55
9170324--9170372	22	2.2	22	88	0	71	42	8	6	42	1.59
9170269--9170431	66	2.5	67	79	4	161	39	9	8	42	1.67
9170520--9170582	19	3.2	19	78	12	63	39	9	3	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9170479--9170624	63	2.3	62	82	8	161	40	9	2	47	1.48
9170479--9170815	22	15.7	22	69	11	126	36	9	4	48	1.57
9170843--9170895	22	2.4	22	84	9	72	32	7	5	54	1.52
9171240--9171269	2	15.0	2	100	0	60	50	0	0	50	1.00
9172213--9172242	16	1.9	16	93	6	53	10	13	3	73	1.21
9172217--9172251	17	2.1	16	89	5	52	14	11	5	68	1.37
9172770--9172800	2	15.5	2	100	0	62	48	0	0	51	1.00
9173254--9173334	37	2.2	37	90	0	126	43	0	3	53	1.18
9173356--9173689	72	4.7	71	72	9	232	36	9	6	47	1.62
9173633--9173733	49	2.1	49	96	0	184	32	11	7	47	1.69
9173558--9173806	120	2.1	122	79	8	276	36	10	7	46	1.65
9173682--9173828	71	2.1	71	81	2	170	42	9	4	42	1.58
9173856--9173917	16	3.9	16	68	8	54	40	1	3	54	1.26
9173891--9173946	20	2.8	20	73	13	60	35	0	3	60	1.14
9174477--9174529	22	2.4	22	84	6	63	33	9	5	50	1.58
9174537--9174617	41	1.9	42	82	5	101	39	4	8	46	1.56
9174853--9174933	41	2.0	41	100	0	162	58	9	4	27	1.51
9175830--9175990	81	2.0	81	88	0	241	34	9	16	39	1.81
9176627--9177192	160	3.6	158	81	6	608	42	16	7	32	1.76
9179691--9179879	102	1.9	102	84	4	256	38	9	8	42	1.69
9181098--9181368	84	3.2	84	79	6	230	36	14	15	33	1.88
9181618--9181694	34	2.3	34	81	4	93	37	7	14	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9181619--9181694	17	4.5	16	74	11	71	38	7	14	39	1.75
9182038--9182312	22	12.2	22	68	11	126	45	14	4	35	1.66
9182022--9182361	46	7.6	45	76	7	228	44	13	5	37	1.66
9185166--9185418	133	1.9	132	86	2	355	49	12	10	27	1.73
9185787--9185830	17	2.5	17	85	7	52	63	9	4	22	1.42
9187747--9187789	19	2.3	19	84	8	52	74	4	4	16	1.16
9188456--9188523	34	2.0	34	100	0	136	35	11	5	47	1.65
9192868--9192930	32	2.0	32	100	0	126	31	23	6	38	1.80
9193338--9193364	2	13.5	2	100	0	54	48	0	0	51	1.00
9193378--9193432	17	3.3	17	68	12	51	65	7	7	20	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195