genome.fa.s112.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  97  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17621424--17621476	26	2.0	26	88	0	79	26	24	18	30	1.98
17622320--17622372	26	2.0	26	100	0	106	26	26	20	26	1.99
17623140--17624611	731	2.0	734	87	1	2130	26	24	23	25	2.00
17625471--17625523	26	2.0	26	88	0	79	32	24	16	26	1.97
17623876--17628822	895	5.6	893	90	3	7086	26	24	23	25	2.00
17627260--17627312	26	2.0	26	88	0	79	32	24	16	26	1.97
17630138--17630197	26	2.4	26	80	5	79	26	26	18	28	1.98
17629347--17632009	904	3.0	890	86	4	3625	26	25	23	25	2.00
17631769--17632186	185	2.3	184	82	2	509	23	28	26	22	1.99
17632113--17632164	26	2.0	25	92	3	86	28	25	19	26	1.98
17633015--17633067	26	2.0	26	96	0	97	26	24	20	28	1.99
17633909--17633959	26	2.0	26	92	0	84	31	27	13	27	1.94
17631960--17634936	895	3.3	894	85	3	3983	25	25	24	25	2.00
17636545--17636663	60	2.0	60	100	0	238	18	31	20	29	1.96
17639823--17639875	26	2.0	26	96	0	97	28	22	20	28	1.99
17636878--17641493	898	5.1	898	86	2	6178	25	24	24	25	2.00
17641467--17641519	26	2.0	26	81	0	61	30	18	16	33	1.94
17640694--17642232	743	2.1	738	86	3	2194	26	23	23	26	2.00
17642372--17642443	26	2.8	26	97	0	135	27	26	18	27	1.98
17643109--17643469	159	2.3	159	85	1	474	18	26	29	24	1.98
17643445--17643523	26	3.0	26	94	0	140	24	25	20	30	1.98
17644658--17644710	26	2.0	26	96	0	97	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17648228--17648272	22	2.0	22	100	0	90	20	22	35	22	1.96
17650441--17650493	26	2.0	26	96	0	97	26	24	20	28	1.99
17651110--17651162	26	2.0	26	85	0	70	26	22	20	30	1.98
17650127--17651471	669	2.0	671	86	3	1879	21	26	27	24	1.99
17652014--17652065	26	2.0	26	88	3	79	30	25	17	26	1.97
17652916--17652967	26	2.0	26	88	3	79	30	25	17	26	1.97
17650800--17657665	902	7.5	895	76	11	5464	25	24	24	25	2.00
17653671--17654035	185	2.0	185	84	3	475	21	28	27	23	1.99
17653850--17657570	880	4.2	872	83	6	4351	25	24	24	25	2.00
17656649--17656701	26	2.0	26	88	0	79	26	24	18	30	1.98
17655778--17657665	891	2.1	892	87	2	2649	25	24	24	25	2.00
17657544--17657596	26	2.0	26	96	0	97	28	26	18	26	1.98
17657880--17657932	26	2.0	26	100	0	106	26	26	20	26	1.99
17657337--17658001	336	2.0	339	86	1	931	18	28	28	24	1.98
17659586--17659636	26	2.0	26	100	0	102	27	25	19	27	1.99
17657839--17662079	890	4.9	863	83	7	4710	25	24	24	25	2.00
17660474--17660526	26	2.0	26	92	0	88	24	26	24	24	2.00
17661385--17661437	26	2.0	26	92	0	88	28	22	20	28	1.99
17663010--17663062	26	2.0	26	92	0	88	28	24	18	28	1.98
17662140--17666311	868	4.8	865	82	6	4695	26	24	23	25	2.00
17665630--17665682	26	2.0	26	96	0	97	26	24	20	28	1.99
17665512--17668041	832	3.0	828	81	7	2585	26	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17667351--17667403	26	2.0	26	96	0	97	26	24	20	28	1.99
17669523--17669575	26	2.0	26	92	7	90	30	22	16	30	1.96
17670425--17670477	26	2.0	26	88	0	79	30	24	15	30	1.95
17668154--17677564	876	10.4	900	74	11	6888	25	24	23	25	2.00
17671321--17671373	26	2.0	26	88	0	79	24	22	22	30	1.99
17668673--17673099	874	5.0	871	82	7	5133	25	24	24	26	2.00
17673073--17673152	26	3.1	26	94	0	133	27	25	18	28	1.98
17675020--17675070	26	2.0	26	92	0	84	29	23	15	31	1.95
17675878--17675930	26	2.0	26	92	0	88	28	24	18	28	1.98
17676051--17676081	14	2.2	14	100	0	62	19	25	35	19	1.95
17676787--17676839	26	2.0	26	92	0	88	28	26	15	30	1.96
17675865--17677538	881	1.9	892	87	5	2464	26	24	22	25	2.00
17679276--17679328	26	2.0	26	96	0	97	28	26	18	26	1.98
17680170--17680222	26	2.0	26	96	0	97	28	26	18	26	1.98
17677509--17680966	890	3.9	896	86	3	4659	26	24	23	25	2.00
17680196--17681685	715	2.1	716	89	1	2261	26	24	23	25	2.00
17681789--17681840	26	2.0	26	92	0	86	28	25	17	28	1.97
17683398--17683450	26	2.0	26	96	0	97	26	24	20	28	1.99
17684301--17684353	26	2.0	26	96	0	97	24	26	22	26	2.00
17682527--17686173	902	4.0	903	87	2	4933	26	25	23	25	2.00
17685207--17685285	26	3.0	26	98	0	149	26	24	20	29	1.99
17685994--17686352	179	2.0	179	86	3	499	21	27	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17686313--17686365	26	2.0	26	92	0	88	26	22	20	30	1.98
17686172--17689545	894	3.8	894	88	2	4777	25	24	24	25	2.00
17688104--17688156	26	2.0	26	92	0	88	26	26	20	26	1.99
17688994--17689046	26	2.0	26	96	0	97	28	24	20	26	1.99
17689771--17689821	26	2.0	26	96	0	93	25	25	19	29	1.99
17689547--17698478	900	10.0	900	84	4	11388	25	24	24	25	2.00
17692441--17692493	26	2.0	26	96	0	97	28	26	18	26	1.98
17693323--17693375	26	2.0	26	92	0	88	28	24	18	28	1.98
17693456--17693488	11	3.0	11	95	0	57	18	33	36	12	1.88
17696012--17696063	26	2.0	26	96	0	95	26	25	19	28	1.98
17696914--17696966	26	2.0	26	96	0	97	28	26	18	26	1.98
17697975--17698976	498	2.0	500	92	0	1675	31	22	19	26	1.98
17701831--17701883	26	2.0	26	96	0	97	26	24	20	28	1.99
17698476--17703746	894	5.9	890	84	5	6136	26	24	23	25	2.00
17703610--17703661	26	2.0	26	96	0	95	28	26	17	26	1.97
17704819--17704871	26	2.0	26	92	0	88	28	26	16	28	1.97
17706427--17706479	26	2.0	26	92	0	88	28	26	16	28	1.97
17707733--17707785	26	2.0	26	96	0	97	28	24	20	26	1.99
17714252--17714304	26	2.0	26	92	0	88	28	24	18	28	1.98
17714638--17714690	26	2.0	26	92	0	88	28	24	18	28	1.98
17713974--17714738	386	2.0	373	86	4	1048	21	28	26	23	1.99
17715104--17715156	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17716001--17716052	26	2.0	26	88	3	79	28	26	17	26	1.97
17714864--17718545	896	4.1	892	84	5	4654	25	24	24	25	2.00
17716909--17716958	26	1.9	26	95	0	91	28	26	18	28	1.98
17717769--17717820	26	2.0	26	96	0	95	32	25	15	26	1.95
17717795--17719248	709	2.0	709	87	3	2073	27	24	22	25	2.00
17719375--17719424	26	1.9	26	95	0	91	28	22	16	34	1.95
17721141--17721191	26	2.0	26	92	0	84	25	23	21	29	1.99
17720263--17758184	902	42.2	895	76	9	25286	25	24	24	25	2.00
17722785--17722836	26	2.0	26	88	7	79	26	23	17	32	1.96
17723092--17723148	26	2.1	27	87	3	80	29	24	17	28	1.97
17723999--17724051	26	2.0	26	92	0	88	24	24	20	30	1.99
17726640--17726692	26	2.0	26	88	0	79	28	26	16	28	1.97
17725023--17758299	903	37.1	902	79	8	31014	25	24	24	25	2.00
17727370--17727724	159	2.2	159	87	3	500	18	28	30	22	1.98
17732024--17732073	26	1.9	26	95	0	91	24	24	24	28	2.00
17732913--17732965	26	2.0	26	92	0	88	26	22	22	28	1.99
17733818--17733868	26	2.0	26	96	0	93	29	23	17	29	1.97
17734718--17734770	26	2.0	26	88	0	79	28	20	20	30	1.98
17736483--17736535	26	2.0	26	92	0	88	28	26	20	24	1.99
17737367--17737419	26	2.0	26	96	0	97	26	24	20	28	1.99
17738267--17738318	26	2.0	26	96	0	95	28	25	19	26	1.98
17741832--17741884	26	2.0	26	92	0	88	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17741673--17742085	185	2.2	185	85	4	571	21	27	28	22	1.99
17742017--17742069	26	2.0	26	92	0	88	30	26	16	26	1.97
17743782--17743834	26	2.0	26	92	0	88	26	26	20	26	1.99
17744679--17744757	26	3.0	26	88	3	115	31	25	17	25	1.97
17745606--17745658	26	2.0	26	85	0	70	30	20	20	28	1.98
17746507--17746559	26	2.0	26	100	0	106	26	26	20	26	1.99
17747405--17747457	26	2.0	26	92	0	88	26	22	20	30	1.98
17748305--17748371	26	2.6	26	88	4	100	28	22	17	31	1.97
17749222--17749271	26	1.9	26	95	0	91	24	28	20	28	1.99
17751873--17751925	26	2.0	26	100	0	106	26	26	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195