genome.fa.s112.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  99  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17900663--17900715	26	2.0	26	96	0	97	28	26	18	26	1.98
17898893--17901362	899	2.8	889	88	3	3551	25	24	23	25	2.00
17901097--17901631	269	2.0	269	90	1	849	32	25	18	23	1.97
17901818--17901870	26	2.0	26	92	0	88	30	26	18	24	1.98
17903722--17903774	26	2.0	26	92	0	88	30	26	16	26	1.97
17904186--17904238	26	2.0	26	92	0	88	28	24	20	26	1.99
17906015--17906067	26	2.0	26	96	0	97	26	24	20	28	1.99
17907769--17907821	26	2.0	26	96	0	97	30	24	16	28	1.97
17908670--17908722	26	2.0	26	100	0	106	26	22	20	30	1.98
17909536--17910877	735	1.8	738	89	3	2099	28	23	21	26	1.99
17910978--17911029	26	2.0	26	92	0	86	28	25	19	26	1.98
17911677--17911702	4	6.5	4	100	0	52	0	73	26	0	0.84
17912508--17912560	26	2.0	26	96	0	97	28	26	18	26	1.98
17914021--17914632	311	2.0	312	89	0	947	31	25	19	24	1.98
17915678--17915759	26	3.2	26	96	0	146	29	26	18	25	1.98
17917466--17917519	26	2.1	26	100	0	108	27	22	20	29	1.98
17918641--17918693	26	2.0	26	92	0	88	28	24	18	28	1.98
17918667--17923088	871	5.0	868	84	5	5299	25	24	23	25	2.00
17919544--17923243	897	4.2	896	85	4	4883	25	24	24	25	2.00
17922171--17922221	26	2.0	26	92	0	84	31	29	11	27	1.92
17925464--17925516	26	2.0	26	96	0	97	28	26	20	24	1.99
17924680--17926480	876	2.1	872	86	2	2547	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17926340--17926392	26	2.0	26	88	0	79	26	26	18	28	1.98
17927791--17927863	26	2.8	26	97	0	137	28	28	15	27	1.96
17926529--17933465	873	7.7	874	80	8	7118	25	25	24	24	2.00
17929575--17933465	928	4.3	894	84	4	4787	25	25	24	24	2.00
17931350--17931428	26	3.0	26	98	0	149	29	26	17	26	1.98
17933170--17933222	26	2.0	26	92	0	88	30	26	16	26	1.97
17933789--17933839	26	2.0	26	100	0	102	27	23	19	29	1.98
17934945--17934997	26	2.0	26	88	0	79	26	20	22	30	1.98
17935688--17935740	26	2.0	26	88	0	79	28	20	22	28	1.99
17934921--17936458	744	2.1	743	89	0	2326	26	23	23	26	2.00
17936591--17936643	26	2.0	26	96	0	97	26	24	20	28	1.99
17936788--17937937	582	2.0	580	96	0	2131	28	24	20	26	1.99
17938068--17938120	26	2.0	26	96	0	97	26	20	22	30	1.98
17937359--17939656	899	2.6	892	88	2	3392	26	24	23	25	2.00
17940579--17940631	26	2.0	26	96	0	97	26	24	20	28	1.99
17939820--17944368	899	5.1	902	85	4	5640	25	24	24	25	2.00
17944166--17944218	26	2.0	26	88	0	79	26	24	20	28	1.99
17945539--17945591	26	2.0	26	92	0	88	26	20	22	30	1.98
17945672--17945704	11	3.0	11	100	0	66	27	36	27	9	1.87
17950210--17950262	26	2.0	26	92	0	88	28	24	18	28	1.98
17950394--17950446	26	2.0	26	85	0	70	30	18	20	30	1.97
17952908--17952960	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17953783--17953835	26	2.0	26	96	0	97	24	26	22	26	2.00
17952153--17956701	895	5.1	895	84	4	5640	26	24	23	25	2.00
17956495--17956547	26	2.0	26	88	0	79	26	24	20	28	1.99
17956971--17957023	26	2.0	26	92	0	88	26	28	18	26	1.98
17956229--17957177	476	2.0	474	85	2	1276	18	30	28	22	1.97
17958855--17961893	903	3.4	877	84	6	3741	25	23	24	25	2.00
17960607--17960659	26	2.0	26	92	0	88	28	22	20	28	1.99
17961455--17962337	448	2.0	437	86	5	1229	20	25	28	25	1.99
17962847--17962899	26	2.0	26	96	0	97	28	26	18	26	1.98
17963523--17963601	26	3.0	26	98	0	149	26	27	20	25	1.99
17965169--17965219	26	2.0	26	96	0	93	27	27	17	27	1.98
17966652--17966704	26	2.0	26	96	0	97	26	24	20	28	1.99
17968424--17968476	26	2.0	26	92	0	88	24	24	22	28	2.00
17969326--17969399	25	2.9	26	89	4	114	28	25	18	27	1.98
17969326--17969403	26	3.0	26	90	3	122	29	24	19	26	1.98
17968424--17970113	916	1.8	921	88	3	2619	26	24	23	25	2.00
17971693--17971743	26	2.0	26	92	0	84	29	23	17	29	1.97
17971793--17971844	24	2.2	24	86	3	70	17	11	40	30	1.85
17972516--17972568	26	2.0	26	96	0	97	26	26	22	24	2.00
17975903--17975955	26	2.0	26	96	0	97	24	20	26	28	1.99
17976814--17976863	26	1.9	26	88	8	75	30	18	22	30	1.97
17977708--17977760	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17975040--17988751	904	15.2	902	82	5	15425	25	23	25	25	2.00
17978602--17978654	26	2.0	26	85	0	70	26	16	24	32	1.97
17980366--17980418	26	2.0	26	85	7	72	26	18	24	30	1.98
17981257--17981309	26	2.0	26	92	0	88	28	18	24	28	1.98
17982156--17982208	26	2.0	26	92	7	90	26	16	26	30	1.97
17984864--17984916	26	2.0	26	92	0	88	28	18	26	26	1.98
17985632--17985684	26	2.0	26	85	7	72	32	16	22	28	1.96
17985817--17985869	26	2.0	26	100	0	106	26	20	26	26	1.99
17985608--17986028	185	2.3	184	85	4	544	23	26	26	23	2.00
17986716--17986768	26	2.0	26	96	0	97	26	18	26	28	1.98
17987622--17987674	26	2.0	26	96	0	97	26	22	24	26	2.00
17988508--17988560	26	2.0	26	92	0	88	28	16	26	28	1.97
17989753--17989811	26	2.3	26	88	5	95	25	18	27	28	1.98
17991547--17991599	26	2.0	26	92	0	88	28	18	24	28	1.98
17988754--17996886	901	9.1	900	85	4	10374	24	24	25	25	2.00
17992452--17992502	25	2.0	26	92	3	86	27	17	25	29	1.98
17993347--17993397	26	2.0	26	96	0	93	31	13	27	27	1.94
17994223--17994275	26	2.0	26	92	0	88	26	16	26	30	1.97
17995088--17995140	26	2.0	26	96	0	97	24	22	26	26	2.00
17995992--17996044	26	2.0	26	92	0	88	26	16	26	30	1.97
17997567--17997636	25	2.7	26	91	4	115	27	17	27	28	1.97
17997567--17997644	26	3.0	26	83	10	106	26	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17998429--17998481	26	2.0	26	92	0	88	28	22	24	24	2.00
18002586--18002620	14	2.5	14	90	0	61	17	34	34	14	1.90
18003567--18003619	26	2.0	26	92	0	88	24	18	26	30	1.98
18005138--18005174	13	2.9	13	96	4	67	40	16	29	13	1.86
18001940--18010433	892	9.6	882	81	8	8981	25	23	24	25	2.00
18008907--18008959	26	2.0	26	85	7	72	28	16	24	30	1.97
18011273--18011325	26	2.0	26	96	0	97	26	18	26	28	1.98
18012173--18012225	26	2.0	26	88	0	79	24	24	24	26	2.00
18013094--18013144	26	2.0	26	96	0	93	29	19	23	27	1.98
18014009--18014063	28	2.0	26	82	6	65	30	20	20	29	1.97
18014902--18014953	26	2.0	26	96	0	95	30	19	21	28	1.97
18015789--18015841	26	2.0	26	96	0	97	28	18	26	26	1.98
18016683--18016735	26	2.0	26	92	0	88	26	18	24	30	1.98
18018468--18018519	26	2.0	26	92	0	86	26	15	26	30	1.96
18011192--18019335	895	9.1	894	83	6	9695	25	24	24	25	2.00
18024425--18024493	25	2.6	28	76	23	87	71	0	20	8	1.12
18024429--18024484	22	2.6	22	75	13	71	76	0	16	7	0.99
18024429--18024492	22	3.0	21	76	13	67	75	0	17	7	1.04
18025697--18025859	41	4.1	41	79	17	193	22	17	25	33	1.96
18025753--18025815	31	2.0	32	93	3	110	19	17	30	33	1.95
18025866--18025937	1	72.0	1	74	0	63	87	11	0	1	0.61
18025869--18025937	9	7.7	9	81	12	88	86	11	0	1	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18025868--18025937	19	3.9	18	82	14	99	87	11	0	1	0.62
18025865--18025937	29	2.6	29	85	12	98	86	10	0	2	0.68
18025867--18025937	37	1.9	37	88	5	108	87	11	0	1	0.61
18025866--18025928	8	7.5	8	81	15	74	87	11	0	1	0.62
18025866--18025937	10	7.6	10	77	13	73	87	11	0	1	0.61
18027149--18027205	30	1.9	30	85	7	80	12	5	3	78	1.03
18027247--18027311	18	3.6	17	82	10	69	13	6	1	78	1.01
18027264--18027306	9	4.9	8	81	18	50	13	4	0	81	0.84
18027243--18027309	11	6.6	10	75	13	57	14	4	1	79	0.97
18027344--18027560	118	1.9	115	91	4	355	46	7	12	34	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195