genome.fa.s112.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  50  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10434824--10434863	20	2.0	20	95	0	71	35	17	10	37	1.83
10440643--10440954	133	2.3	133	80	2	322	40	18	13	27	1.88
10451721--10451794	11	7.0	11	70	20	59	35	8	12	44	1.71
10451741--10451804	22	3.0	22	74	17	64	35	7	12	43	1.71
10455836--10455871	4	9.2	4	93	6	65	25	0	0	75	0.81
10455835--10455899	12	5.1	13	83	16	75	30	0	0	69	0.89
10455848--10455899	3	16.0	3	96	4	68	30	0	0	69	0.89
10456259--10456332	23	3.1	22	80	17	78	62	1	0	36	1.04
10457347--10457391	3	14.7	3	90	9	65	66	0	0	33	0.92
10462513--10462570	19	2.9	20	76	21	59	51	1	0	46	1.11
10469840--10469916	38	2.0	38	92	5	129	32	31	9	27	1.88
10476725--10476754	14	2.1	14	93	0	51	43	0	3	53	1.17
10476867--10476934	26	2.6	25	76	15	84	47	0	2	50	1.16
10476832--10476934	47	2.1	51	81	15	119	48	0	1	49	1.12
10476913--10476997	18	4.8	18	71	16	54	49	0	2	48	1.14
10477102--10477129	13	2.2	13	100	0	56	42	0	0	57	0.99
10477303--10477402	42	2.3	44	77	11	109	44	2	2	52	1.24
10477473--10477507	13	2.6	13	95	4	61	34	0	2	62	1.10
10485641--10485708	12	5.6	12	72	10	57	41	25	8	25	1.84
10486275--10486506	118	1.9	118	81	6	277	45	11	9	34	1.71
10486393--10487176	187	4.2	183	78	6	741	41	12	11	34	1.79
10493243--10493284	18	2.2	20	83	8	52	30	2	14	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10497189--10497221	3	11.3	3	93	6	59	30	0	0	69	0.88
10497788--10497824	3	12.3	3	100	0	74	32	0	0	67	0.91
10500531--10500564	3	10.7	3	87	12	50	67	0	0	32	0.91
10500531--10500564	10	3.6	9	88	11	50	67	0	0	32	0.91
10500769--10500868	39	2.6	39	79	7	96	50	16	9	25	1.74
10500926--10501020	39	2.4	41	77	10	124	43	17	13	25	1.86
10512829--10512932	8	13.9	8	70	16	71	57	0	0	40	1.11
10512829--10512932	23	4.6	22	76	11	104	57	0	0	40	1.11
10512826--10512945	23	5.3	23	71	13	70	59	0	1	38	1.13
10512962--10513049	19	4.9	18	69	21	60	47	1	0	51	1.08
10512995--10513043	17	2.8	17	81	9	55	48	0	0	51	1.00
10513028--10513076	26	1.9	25	95	4	89	53	4	0	42	1.20
10513026--10513091	26	2.6	25	80	7	87	48	3	0	48	1.17
10515305--10515355	25	2.0	25	81	7	59	70	0	3	25	1.04
10515510--10515564	25	2.2	25	87	6	85	18	10	30	40	1.85
10516926--10516968	17	2.5	17	80	0	50	44	6	2	46	1.43
10517080--10517148	31	2.3	31	78	19	74	55	2	2	39	1.30
10517282--10517337	29	1.9	29	88	0	85	21	10	17	50	1.77
10521612--10521725	60	1.9	59	94	1	201	39	10	10	39	1.74
10521410--10521879	261	1.8	259	94	2	845	35	11	16	37	1.84
10525822--10525856	18	1.9	18	88	0	52	51	0	2	45	1.16
10536515--10536733	14	15.7	13	71	12	109	23	1	27	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10536515--10536733	27	7.8	28	73	11	119	23	1	27	47	1.62
10536515--10536679	41	4.0	41	86	1	213	23	1	28	47	1.59
10536600--10536675	34	2.2	36	81	9	86	23	0	26	50	1.50
10536591--10536679	7	12.7	7	75	13	67	23	0	26	49	1.50
10536752--10536806	17	3.2	17	94	0	92	25	5	27	41	1.77
10539081--10539171	22	4.1	22	76	8	78	30	16	21	30	1.96
10539073--10539171	44	2.2	44	82	7	121	31	16	23	29	1.96
10539194--10539365	41	4.2	40	73	9	125	34	9	11	44	1.73
10539261--10539359	41	2.5	40	86	3	135	36	8	9	46	1.65
10539194--10539825	40	15.6	40	69	6	159	36	10	13	39	1.79
10539406--10539622	120	1.8	119	87	3	328	35	10	16	37	1.83
10539286--10539634	119	2.9	120	76	5	330	37	10	13	39	1.78
10540503--10540581	28	2.6	28	88	9	104	13	21	3	60	1.49
10541744--10541800	9	6.0	9	87	8	69	1	17	0	80	0.79
10542288--10542342	10	5.9	9	83	8	58	5	9	1	83	0.86
10542295--10542345	19	3.0	18	81	16	56	3	9	3	82	0.93
10545684--10545826	37	3.8	37	82	3	126	36	9	20	32	1.86
10545807--10545893	36	2.7	31	79	12	86	29	5	28	35	1.81
10545720--10545918	104	1.9	104	79	6	224	33	9	22	35	1.85
10546990--10547022	17	1.9	17	100	0	66	18	6	3	72	1.18
10547604--10547650	17	2.8	17	84	9	60	27	4	25	42	1.73
10550370--10550423	19	2.8	19	85	2	63	48	1	1	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10550431--10550524	44	2.2	42	77	9	100	63	5	7	23	1.41
10550519--10550680	50	3.2	50	68	20	129	67	9	1	21	1.27
10550775--10550815	19	2.2	19	86	8	57	65	7	0	26	1.18
10550782--10550852	28	2.5	28	81	9	81	61	11	4	22	1.46
10551421--10551478	18	3.2	18	80	0	62	22	5	3	68	1.24
10551420--10551478	8	6.9	8	77	12	55	23	5	3	67	1.26
10551412--10551478	26	2.6	25	84	13	82	22	4	4	68	1.26
10551412--10551479	9	7.7	9	75	17	54	22	4	5	67	1.30
10551428--10551484	26	2.2	25	81	9	71	21	3	5	70	1.22
10554960--10555028	35	2.0	35	88	2	104	34	10	1	53	1.44
10560386--10560460	11	7.0	10	75	11	51	0	22	2	74	0.94
10581812--10581845	18	2.0	18	88	11	54	52	0	0	47	1.00
10582324--10582514	20	9.4	19	69	20	104	51	6	2	39	1.41
10582322--10582546	9	23.4	9	65	14	67	51	5	3	40	1.42
10582357--10582444	18	4.8	17	77	14	86	52	5	3	38	1.42
10582439--10582496	21	2.8	22	82	15	70	56	5	1	36	1.32
10582355--10582467	56	2.0	55	81	10	131	52	5	3	38	1.41
10582723--10582767	18	2.4	20	85	10	60	37	4	2	55	1.32
10582751--10582792	10	4.3	10	80	17	52	45	4	0	50	1.23
10582739--10582806	29	2.3	30	90	5	104	42	2	1	52	1.25
10583056--10583080	13	1.9	13	100	0	50	64	0	0	36	0.94
10583046--10583108	21	3.0	21	83	4	65	63	4	0	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10583130--10583163	10	3.4	10	95	0	59	50	0	0	50	1.00
10583295--10583333	19	2.0	20	85	5	53	41	0	2	56	1.13
10583347--10583552	10	21.6	10	71	13	96	32	4	5	58	1.40
10583386--10583504	37	3.2	37	79	4	105	33	4	2	59	1.30
10583412--10583552	20	7.3	20	76	12	116	31	2	5	60	1.35
10583386--10583505	38	3.2	38	80	7	111	34	4	2	59	1.30
10583456--10583533	39	2.0	38	85	7	104	32	2	3	61	1.27
10583395--10583551	59	2.8	57	82	7	160	31	3	5	59	1.35
10583557--10583620	31	2.1	29	86	11	85	45	1	1	51	1.20
10583632--10583660	10	2.7	11	89	10	51	20	0	6	72	1.07
10583636--10583702	10	7.6	9	79	16	52	22	1	4	71	1.12
10583646--10583694	16	3.0	16	87	3	71	22	2	2	73	1.04
10584497--10584529	16	2.1	16	94	0	57	66	6	0	27	1.15
10587795--10587830	18	2.0	18	89	10	56	30	0	0	69	0.89
10588852--10588907	20	3.2	17	79	16	69	33	0	1	64	1.04
10597091--10597120	5	6.2	5	96	3	53	16	20	23	40	1.91
10604086--10604118	10	3.3	10	84	16	50	69	0	0	30	0.88
10604753--10604878	21	5.7	21	64	24	62	45	2	2	50	1.27
10608144--10608199	25	2.2	24	81	12	60	10	5	12	71	1.29
10608164--10608205	13	3.3	12	78	21	50	7	9	7	76	1.17
10608157--10608197	13	3.2	13	80	19	59	7	7	7	78	1.11
10608157--10608205	25	2.0	25	95	0	89	8	10	6	75	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10608164--10608205	12	3.4	12	78	18	50	7	9	7	76	1.17
10612813--10612848	13	2.6	14	95	4	65	22	2	5	69	1.22
10612922--10612979	29	2.0	30	86	3	82	12	6	5	75	1.16
10612947--10612986	19	2.2	18	90	4	62	10	7	2	80	1.00
10613841--10613879	18	2.0	20	90	9	64	10	2	2	84	0.81
10618899--10618956	26	2.3	25	96	3	107	50	0	0	50	1.00
10620972--10621005	10	3.4	10	91	0	50	61	8	0	29	1.26
10621416--10621471	26	2.1	28	83	6	71	42	16	5	35	1.70
10622962--10622990	12	2.3	13	94	5	51	24	48	24	3	1.66
10632455--10632500	20	2.3	20	92	3	76	58	8	2	30	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195