genome.fa.s112.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  80  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15329245--15329297	26	2.0	26	100	0	106	26	20	26	26	1.99
15329981--15330033	26	2.0	26	96	0	97	28	20	24	26	1.99
15332355--15332381	14	1.9	14	100	0	54	7	37	40	14	1.74
15332454--15332506	26	2.0	26	96	0	97	28	18	26	26	1.98
15333731--15333780	26	1.9	26	95	0	91	34	22	20	24	1.97
15334720--15338966	874	4.8	894	84	5	5342	25	23	24	26	2.00
15338892--15338944	26	2.0	26	92	0	88	26	16	26	30	1.97
15339626--15339676	26	2.0	26	92	0	84	29	17	25	27	1.98
15340531--15340583	26	2.0	26	92	7	90	26	15	26	32	1.95
15338918--15348814	907	11.0	900	85	4	12108	25	24	24	25	2.00
15341444--15341511	26	2.6	26	85	0	91	30	20	22	26	1.98
15343238--15343290	26	2.0	26	85	7	72	28	15	26	30	1.96
15344125--15344176	25	2.0	26	92	3	88	26	19	25	28	1.98
15345025--15345077	26	2.0	26	100	0	106	26	20	26	26	1.99
15345923--15345981	26	2.3	26	91	5	95	25	18	27	28	1.98
15346819--15346868	25	2.0	23	88	11	73	30	12	28	30	1.92
15338918--15348814	889	11.0	893	85	5	11611	25	24	24	25	2.00
15347716--15347768	26	2.0	26	88	0	79	28	16	24	30	1.97
15348584--15348635	26	2.0	26	88	0	77	32	15	17	34	1.91
15349431--15349483	26	2.0	26	92	0	88	26	16	24	32	1.97
15350744--15350795	26	2.0	26	92	0	86	28	17	25	28	1.97
15357066--15357118	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15353807--15362062	877	9.4	897	78	10	8159	25	24	24	25	2.00
15357946--15357998	26	2.0	26	85	7	72	24	18	24	32	1.97
15359663--15359709	24	2.0	24	100	0	94	29	21	23	25	1.99
15360562--15360614	26	2.0	26	92	0	88	28	18	24	28	1.98
15359329--15362062	900	3.0	896	89	2	4133	25	24	24	25	2.00
15361462--15361514	26	2.0	26	92	0	88	28	18	24	28	1.98
15363494--15363543	26	1.9	26	91	0	82	32	18	26	24	1.97
15365287--15365339	26	2.0	26	88	0	79	28	20	22	28	1.99
15362769--15365605	893	3.2	897	87	2	4055	25	24	25	24	2.00
15365615--15365653	21	1.9	21	89	5	62	20	30	28	20	1.98
15365756--15365901	22	7.1	22	67	24	70	27	0	4	67	1.13
15365833--15365886	3	18.7	3	78	17	53	31	0	0	68	0.90
15365828--15365907	18	4.7	18	73	26	68	30	0	1	68	0.97
15365899--15365964	28	2.4	26	85	9	87	25	9	1	63	1.33
15366434--15366472	11	3.5	11	85	0	51	20	25	25	28	1.99
15366906--15366967	16	3.6	16	78	18	63	14	4	3	77	1.06
15366993--15367567	59	9.8	59	86	4	772	43	8	13	34	1.74
15372034--15372371	41	8.1	40	91	5	482	22	17	23	36	1.95
15372034--15372371	83	4.1	83	91	4	533	22	17	23	36	1.95
15372034--15372371	124	2.7	123	91	5	538	22	17	23	36	1.95
15372380--15372407	11	2.5	11	100	0	56	92	7	0	0	0.37
15372686--15372734	3	16.7	3	80	16	50	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15372665--15372767	18	6.2	17	74	21	69	30	0	1	66	1.08
15372683--15372755	20	3.3	22	79	18	73	27	0	1	71	0.95
15372746--15372812	28	2.5	26	85	9	89	25	8	1	64	1.31
15373384--15373417	15	2.2	16	89	5	52	47	0	52	0	1.00
15373657--15373789	12	11.2	11	69	20	72	15	4	2	78	1.01
15373737--15373801	9	7.6	8	77	16	60	13	6	0	80	0.90
15373706--15373781	28	2.6	32	78	16	83	15	6	0	77	0.96
15373677--15373786	18	6.0	18	73	13	91	16	4	1	77	1.02
15373739--15373796	26	2.1	28	84	6	75	13	5	0	81	0.86
15373807--15374278	60	7.9	60	85	5	620	44	8	12	34	1.72
15373900--15373994	32	3.1	32	61	27	78	43	9	14	32	1.78
15373807--15374278	118	4.0	117	89	3	710	44	8	12	34	1.72
15373807--15374278	238	2.0	238	93	2	806	44	8	12	34	1.72
15375338--15375390	26	2.0	26	96	0	97	26	18	26	28	1.98
15376234--15376286	26	2.0	26	92	0	88	28	16	26	28	1.97
15374752--15379937	895	5.7	896	82	6	6060	25	23	24	26	2.00
15378011--15378111	26	3.9	26	93	0	166	28	17	25	27	1.98
15378959--15379011	26	2.0	26	85	7	72	30	16	22	30	1.96
15379854--15379905	26	2.0	25	96	3	95	25	21	26	26	1.99
15380494--15380520	14	1.9	14	100	0	54	7	37	40	14	1.74
15380586--15380645	26	2.4	26	88	5	88	31	20	21	26	1.98
15383409--15383461	26	2.0	26	92	7	90	26	15	26	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15384312--15384390	26	3.0	26	79	3	97	30	17	22	29	1.97
15386113--15386165	26	2.0	26	85	7	72	28	15	26	30	1.96
15387017--15387069	26	2.0	26	92	0	88	26	16	28	28	1.97
15382766--15398910	890	17.7	902	76	10	11519	25	23	24	25	2.00
15387929--15387981	26	2.0	26	96	0	97	28	20	26	24	1.99
15388821--15388879	26	2.3	26	85	5	86	25	16	27	30	1.97
15389720--15389770	26	2.0	24	92	7	84	31	11	27	29	1.92
15389950--15389974	4	6.2	4	100	0	50	0	24	76	0	0.80
15390623--15390675	26	2.0	26	88	0	79	28	16	24	30	1.97
15382701--15391742	895	10.1	890	84	5	10655	25	23	24	25	2.00
15391499--15391551	26	2.0	26	92	0	88	30	16	22	30	1.96
15392327--15392379	26	2.0	26	88	0	79	28	16	24	30	1.97
15392580--15393416	428	2.0	428	87	1	1230	28	18	20	32	1.96
15394417--15394469	26	2.0	26	100	0	106	26	16	26	30	1.97
15397093--15397145	26	2.0	26	100	0	106	26	16	26	30	1.97
15394065--15398910	902	5.4	891	90	2	7534	25	24	25	25	2.00
15397983--15398035	26	2.0	26	92	7	90	26	16	26	30	1.97
15400467--15400519	26	2.0	26	85	0	70	30	20	22	26	1.98
15401359--15401411	26	2.0	26	96	0	97	26	18	26	28	1.98
15402232--15402284	26	2.0	26	96	0	97	26	18	26	28	1.98
15402465--15402503	4	9.8	4	82	0	51	5	23	69	2	1.21
15403142--15403194	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15398855--15405024	904	6.9	898	85	4	7733	25	23	24	25	2.00
15405677--15405729	26	2.0	26	96	0	97	28	20	26	24	1.99
15408320--15408372	26	2.0	26	96	0	97	28	20	24	26	1.99
15410937--15410987	26	2.0	26	96	0	93	31	19	21	27	1.97
15411812--15411864	26	2.0	26	96	0	97	26	18	26	28	1.98
15412716--15412767	26	2.0	26	100	0	104	26	19	26	26	1.99
15413608--15413660	26	2.0	26	85	0	70	28	22	22	26	1.99
15409181--15419838	904	12.0	890	84	4	12977	25	24	24	25	2.00
15414498--15414550	26	2.0	26	92	0	88	24	18	28	28	1.98
15415399--15415451	26	2.0	26	96	0	97	28	20	24	26	1.99
15418012--15418060	26	1.9	26	91	4	82	28	18	26	26	1.98
15418911--15418963	26	2.0	26	96	0	97	26	18	26	28	1.98
15416881--15419838	903	3.3	893	86	3	3861	25	24	24	25	2.00
15419101--15420546	715	2.0	716	88	3	2160	26	23	23	26	2.00
15421421--15421473	26	2.0	26	96	0	97	26	20	28	24	1.99
15422326--15422376	26	2.0	26	92	0	84	29	15	27	27	1.96
15425011--15425089	26	3.0	26	92	0	131	29	18	25	26	1.98
15425940--15425991	25	2.0	26	96	3	97	26	21	25	26	1.99
15419809--15428717	903	9.8	904	86	3	11400	25	23	24	25	2.00
15426845--15426923	26	3.0	26	90	7	133	26	17	26	29	1.98
15427777--15427829	26	2.0	26	92	0	88	30	20	22	26	1.98
15429398--15429450	26	2.0	26	88	0	79	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15430301--15430353	26	2.0	26	96	0	97	28	20	24	26	1.99
15433121--15433173	26	2.0	26	96	0	97	26	18	26	28	1.98
15435837--15435932	26	3.7	26	92	1	167	29	17	26	27	1.98
15438546--15438643	26	3.8	26	94	0	178	28	18	25	27	1.98
15440360--15440412	26	2.0	26	85	7	72	33	18	20	26	1.96
15435887--15442938	890	7.9	888	81	7	7730	24	23	25	26	2.00
15442153--15442203	26	2.0	26	96	0	93	29	13	27	29	1.94
15444596--15444646	26	2.0	26	96	0	93	29	19	23	27	1.98
15444720--15444838	26	4.6	26	90	0	184	28	16	24	30	1.97
15445516--15445569	26	2.0	26	82	10	65	35	18	20	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195