genome.fa.s112.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  172  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28691240--28692339	558	2.0	543	92	2	1822	32	8	10	49	1.66
28692609--28692660	15	3.5	15	80	12	54	9	5	3	80	0.99
28693245--28693285	17	2.2	20	87	12	61	7	9	0	82	0.83
28693596--28693656	17	3.8	16	77	12	54	36	0	3	60	1.13
28693753--28693816	23	2.8	23	78	4	58	9	9	4	76	1.14
28698098--28698127	13	2.3	13	94	0	51	26	0	20	53	1.46
28698264--28699128	364	2.4	362	82	6	1030	34	11	12	42	1.78
28701431--28701470	16	2.5	16	91	0	62	32	0	5	62	1.17
28714524--28714566	16	2.5	17	81	7	52	55	0	2	41	1.12
28715246--28715287	18	2.3	18	83	0	57	73	0	7	19	1.05
28719241--28719341	33	3.2	32	74	16	95	20	0	20	57	1.47
28719257--28719317	27	2.3	27	83	13	81	16	1	22	59	1.46
28720461--28720734	58	4.7	58	86	5	374	33	13	7	45	1.72
28720461--28720734	59	4.7	58	85	6	331	33	13	7	45	1.72
28720461--28720754	117	2.5	116	84	7	382	34	12	7	45	1.70
28720768--28720826	6	9.7	6	72	17	50	79	1	6	11	0.99
28720750--28720826	17	4.6	17	74	11	61	76	2	7	12	1.10
28720768--28720825	11	5.4	11	74	15	50	79	1	6	12	1.00
28721699--28721766	22	3.1	22	74	14	61	63	4	5	26	1.36
28722198--28722432	42	5.7	41	95	2	409	35	23	18	22	1.95
28722406--28722459	27	2.0	27	100	0	108	37	29	14	18	1.91
28722433--28722567	41	3.3	42	84	3	184	37	22	15	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28722282--28722567	151	1.9	151	90	2	459	36	22	16	23	1.94
28723794--28723861	25	2.5	25	86	11	82	7	16	0	76	1.00
28727768--28727915	59	2.5	59	92	5	248	35	14	5	44	1.68
28727947--28727997	23	2.3	22	83	12	68	82	5	1	9	0.91
28727944--28728069	12	9.5	12	71	19	56	76	3	2	17	1.05
28728028--28728070	4	10.8	4	89	0	68	79	0	0	20	0.74
28728416--28728464	20	2.5	19	83	3	53	22	16	20	40	1.91
28729137--28729211	6	12.5	6	72	25	52	77	1	4	17	0.99
28729895--28729924	16	1.9	15	93	6	51	53	3	13	30	1.56
28733939--28733987	26	1.9	25	84	12	64	55	6	4	34	1.44
28735446--28735479	16	2.2	16	89	5	52	41	8	5	44	1.60
28738442--28738466	12	2.1	12	100	0	50	32	0	24	44	1.54
28747182--28747214	16	2.1	17	88	11	52	75	9	3	12	1.14
28754058--28754944	236	3.8	235	80	5	915	34	9	11	45	1.72
28754086--28754944	473	1.8	469	83	4	1136	34	9	11	45	1.71
28758266--28758299	6	5.7	6	96	0	50	50	8	0	41	1.34
28759901--28760642	203	3.7	201	82	3	841	34	12	11	41	1.79
28768358--28768395	2	19.0	2	88	0	58	50	0	0	50	1.00
28769318--28769345	6	4.7	6	100	0	56	35	0	64	0	0.94
28769318--28769352	18	1.9	18	88	0	52	40	0	60	0	0.97
28776340--28776386	21	2.3	20	85	3	58	29	4	2	63	1.25
28786090--28786127	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28786691--28786757	34	2.0	34	96	0	125	44	11	22	20	1.84
28787124--28787173	22	2.3	22	100	0	100	50	14	14	22	1.77
28793254--28793518	105	2.5	102	79	12	279	40	5	14	39	1.69
28796838--28796867	14	2.1	14	93	0	51	53	13	13	20	1.72
28797749--28797795	24	2.0	24	84	15	64	38	0	0	61	0.96
28798572--28798613	9	4.2	10	88	11	52	28	2	0	69	1.01
28798572--28798614	12	3.1	14	87	12	63	27	2	0	69	1.00
28798712--28799527	60	13.6	60	79	9	771	49	5	10	35	1.60
28810074--28810186	58	1.9	58	83	3	147	53	9	18	17	1.70
28810251--28810339	46	1.9	46	84	4	117	55	12	12	20	1.69
28811138--28811306	86	2.0	86	84	4	225	23	18	14	43	1.87
28812320--28812362	19	2.3	18	84	11	52	79	2	6	11	1.02
28813180--28813217	16	2.4	16	90	0	58	78	0	21	0	0.74
28813179--28813224	17	2.8	17	83	3	58	80	0	17	2	0.81
28813217--28813310	3	31.7	3	95	2	172	68	0	0	31	0.90
28813318--28813380	25	2.5	25	94	0	108	34	14	31	19	1.91
28813774--28814407	118	5.4	117	78	6	541	44	15	21	17	1.86
28813774--28814402	236	2.7	233	79	7	680	44	15	21	17	1.86
28825446--28825489	20	2.2	20	87	0	61	81	2	2	13	0.88
28825460--28825489	14	2.1	14	93	0	51	86	0	3	10	0.67
28825868--28825916	22	2.2	22	85	7	64	69	12	2	16	1.28
28826321--28826359	7	5.3	7	82	11	51	82	0	17	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28826321--28826359	16	2.6	14	84	8	51	82	0	17	0	0.68
28826323--28826365	11	3.7	11	82	17	52	79	0	18	2	0.85
28826367--28826487	3	40.3	3	82	15	128	66	0	5	28	1.15
28831183--28831280	51	1.9	51	89	0	151	42	8	6	42	1.59
28833430--28833491	16	3.8	16	80	4	61	40	3	3	53	1.33
28844728--28844761	6	5.7	6	89	0	50	2	14	0	82	0.79
28844806--28844862	3	19.0	3	89	7	89	31	0	0	68	0.90
28852123--28852207	40	2.1	40	88	0	125	23	12	20	43	1.86
28852298--28852705	39	10.6	38	80	10	343	25	9	21	43	1.82
28852302--28852740	78	5.6	77	82	7	426	25	9	21	43	1.82
28852297--28852740	194	2.3	194	85	4	576	25	9	21	43	1.82
28853407--28853511	50	2.1	52	83	3	133	32	14	13	40	1.84
28853825--28853854	12	2.5	12	94	0	51	16	3	6	73	1.18
28853948--28853993	15	2.9	16	83	6	58	76	4	0	19	0.96
28854114--28854147	13	2.5	13	90	4	50	35	2	8	52	1.47
28869424--28869457	17	2.0	17	100	0	68	41	11	11	35	1.78
28870733--28870768	2	18.5	2	88	5	56	47	0	0	52	1.00
28874686--28874718	17	2.0	17	94	5	59	33	6	6	54	1.50
28875488--28875524	2	19.0	2	94	5	67	48	0	0	51	1.00
28876495--28876560	27	2.6	24	77	13	69	60	0	4	34	1.17
28876746--28876799	23	2.3	24	93	3	92	48	0	0	51	1.00
28877645--28877678	9	3.6	9	85	14	50	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28877826--28877866	19	2.2	19	86	8	57	51	2	17	29	1.58
28878180--28878213	9	3.6	9	85	14	50	35	0	0	64	0.94
28889884--28890038	59	2.6	58	84	8	188	35	10	5	48	1.61
28889886--28890038	60	2.6	59	84	10	195	35	10	5	48	1.62
28890507--28890554	18	2.8	18	75	6	55	0	25	0	75	0.81
28890957--28890991	16	2.2	16	100	0	70	80	0	5	14	0.89
28891010--28891055	24	1.9	24	100	0	92	67	0	4	28	1.10
28891010--28891075	24	2.8	24	88	6	82	65	0	3	31	1.08
28891001--28891084	3	26.0	3	73	20	55	64	0	3	32	1.11
28892185--28892215	14	2.2	14	94	0	53	25	0	3	70	1.02
28892505--28892537	18	1.9	17	88	11	50	48	0	3	48	1.17
28894779--28894818	11	3.3	12	89	6	55	47	2	2	47	1.29
28894829--28894883	28	2.0	28	96	0	101	56	5	0	38	1.23
28896283--28896445	55	2.9	55	82	4	182	49	15	11	23	1.77
28896515--28896636	42	2.9	42	86	7	176	40	19	11	27	1.86
28898291--28898340	25	2.0	26	84	11	68	16	20	6	58	1.59
28903857--28903911	23	2.5	21	78	18	58	23	0	3	72	1.00
28903857--28903915	22	2.6	23	75	17	61	23	0	3	72	0.99
28904246--28904298	23	2.5	22	87	9	74	50	0	0	49	1.00
28904271--28904327	30	1.9	30	85	0	78	52	1	0	45	1.11
28904288--28904344	8	7.1	8	77	0	51	61	1	0	36	1.07
28904314--28904360	4	12.0	4	86	4	51	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28904404--28904436	16	2.1	16	94	0	57	24	57	18	0	1.40
28906014--28906050	3	12.0	3	94	5	65	64	0	0	35	0.94
28906578--28906602	13	1.9	13	100	0	50	0	52	0	48	1.00
28908213--28908521	130	2.3	133	83	11	377	35	9	4	50	1.54
28908417--28908563	56	2.5	57	81	10	165	32	10	3	53	1.53
28909626--28909656	16	1.9	16	93	0	53	70	3	0	25	1.02
28910136--28910168	16	2.1	16	100	0	66	60	15	6	18	1.54
28911069--28911144	38	2.2	35	81	13	86	30	7	15	46	1.75
28911194--28911223	10	3.1	10	95	4	53	36	0	0	63	0.95
28920508--28920549	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195