genome.fa.s112.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  78  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15096165--15096199	9	3.9	9	84	0	52	88	0	5	5	0.63
15096162--15096200	18	2.2	18	86	4	62	89	0	5	5	0.58
15096157--15096209	22	2.3	23	87	12	83	83	3	3	9	0.90
15096165--15096203	19	2.1	19	90	4	62	87	0	5	7	0.68
15096550--15096602	26	2.0	26	88	0	79	28	22	20	28	1.99
15096285--15103937	901	8.6	897	83	6	9131	25	24	24	25	2.00
15099213--15099262	26	1.9	26	95	0	91	22	26	22	30	1.99
15100957--15101033	25	3.0	25	96	1	136	27	25	18	28	1.98
15101443--15101499	26	2.3	25	84	6	71	52	17	7	22	1.68
15103665--15103713	25	2.0	25	95	0	89	26	20	20	32	1.97
15100301--15103937	881	4.0	896	84	5	4508	25	24	23	25	2.00
15104445--15104497	26	2.0	26	92	0	88	26	22	20	30	1.98
15107996--15108048	26	2.0	26	92	0	88	28	26	16	28	1.97
15105351--15114429	903	10.2	893	84	4	11108	25	24	24	25	2.00
15108888--15108940	26	2.0	26	85	7	72	28	20	22	28	1.99
15109751--15109803	26	2.0	26	92	0	88	32	28	15	24	1.95
15110656--15110708	26	2.0	26	85	0	70	28	20	18	32	1.97
15112455--15112507	26	2.0	26	96	0	97	24	26	20	28	1.99
15113359--15113410	26	2.0	26	92	0	86	26	23	19	30	1.98
15114254--15114306	26	2.0	26	88	0	79	26	24	18	30	1.98
15114588--15114639	26	2.0	26	92	0	86	28	26	19	25	1.98
15114094--15114763	334	2.0	334	85	1	903	19	27	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15115480--15115532	26	2.0	26	92	0	88	28	24	20	26	1.99
15114614--15118964	866	5.0	872	85	4	5519	25	24	24	25	2.00
15119259--15119333	26	2.9	26	93	0	132	26	25	18	29	1.98
15121090--15122524	702	2.0	705	87	3	2053	27	23	22	26	2.00
15121783--15125321	874	4.0	863	85	5	4556	25	24	24	25	2.00
15124395--15124447	26	2.0	26	96	0	97	28	26	18	26	1.98
15126301--15126353	26	2.0	26	92	0	88	30	26	16	26	1.97
15126409--15126461	26	2.0	26	92	0	88	28	28	16	26	1.97
15128200--15128252	26	2.0	26	92	0	88	28	26	16	28	1.97
15129088--15129140	26	2.0	26	92	0	88	26	22	20	30	1.98
15130842--15130898	25	2.3	25	93	0	96	8	52	22	15	1.70
15131833--15131885	26	2.0	26	96	0	97	26	24	22	26	2.00
15126396--15140562	902	15.5	891	74	11	9711	25	24	23	25	2.00
15126396--15135466	902	10.1	898	81	7	9841	25	24	23	25	2.00
15134518--15134570	26	2.0	26	89	7	81	33	22	15	28	1.94
15136425--15136477	26	2.0	26	92	7	90	30	26	16	26	1.97
15136533--15136585	26	2.0	26	92	0	88	28	28	16	26	1.97
15138327--15138379	26	2.0	26	92	0	88	28	26	16	28	1.97
15136520--15140562	889	4.5	897	86	3	5421	25	24	23	25	2.00
15139216--15139268	26	2.0	26	92	0	88	26	22	20	30	1.98
15140109--15140161	26	2.0	26	96	0	97	28	26	18	26	1.98
15142163--15142194	12	2.7	12	100	0	64	25	28	40	6	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15144045--15144097	26	2.0	26	92	0	88	26	26	18	28	1.98
15140583--15145314	890	5.3	886	83	8	5367	25	24	24	25	2.00
15146966--15147015	26	1.9	26	91	0	82	26	24	20	30	1.98
15148320--15148369	26	1.9	26	91	0	82	26	24	20	30	1.98
15149227--15149279	26	2.0	26	96	0	97	30	24	16	28	1.97
15151844--15151895	26	2.0	26	92	3	88	26	23	23	26	2.00
15152728--15152780	26	2.0	26	88	0	79	24	24	20	30	1.99
15153615--15153664	26	1.9	26	100	0	100	24	28	20	28	1.99
15154518--15154570	26	2.0	26	89	7	81	33	22	15	28	1.94
15150989--15160443	902	10.5	899	76	10	7779	25	24	23	25	2.00
15156425--15156477	26	2.0	26	92	0	88	28	26	16	28	1.97
15157768--15157821	27	2.0	27	85	3	74	55	12	9	22	1.65
15158201--15158253	26	2.0	26	88	0	79	28	24	16	30	1.97
15159090--15159140	26	2.0	26	92	0	84	25	23	19	31	1.98
15159988--15160040	26	2.0	26	96	0	97	28	26	18	26	1.98
15160462--15163981	888	4.0	884	84	6	4396	25	24	23	25	2.00
15163932--15163978	23	2.0	25	83	8	62	25	25	17	31	1.97
15164705--15164757	26	2.0	26	89	7	81	30	24	16	28	1.97
15166746--15166798	26	2.0	26	88	0	79	24	24	20	30	1.99
15167633--15167682	26	1.9	26	95	0	91	24	26	20	30	1.98
15166484--15175639	902	10.3	895	82	6	10162	26	24	23	25	2.00
15168535--15168586	25	2.0	26	92	3	88	32	23	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15169419--15169470	26	2.0	25	85	3	68	28	25	19	26	1.98
15170240--15170291	25	2.1	25	96	0	95	7	51	23	17	1.70
15172082--15172133	26	2.0	25	88	3	77	25	23	21	30	1.99
15175435--15175801	154	2.3	156	84	4	461	19	27	28	23	1.98
15175767--15175822	26	2.2	26	87	6	78	30	28	16	25	1.96
15177292--15179068	873	2.0	871	86	1	2495	26	24	24	25	2.00
15178883--15179253	185	2.0	185	86	1	519	20	29	28	21	1.98
15180076--15180128	26	2.0	26	92	0	88	32	24	15	28	1.95
15179925--15180342	185	2.3	185	87	1	588	24	27	26	22	2.00
15180261--15180313	26	2.0	26	100	0	106	26	26	20	26	1.99
15181132--15181190	26	2.3	26	100	0	118	27	27	20	25	1.99
15182934--15182986	26	2.0	26	96	0	97	26	24	20	28	1.99
15183651--15183961	171	1.8	171	85	0	433	19	30	27	22	1.98
15183848--15184245	185	2.2	185	85	1	521	21	28	27	22	1.99
15184184--15184236	26	2.0	26	92	0	88	32	26	16	24	1.97
15185745--15185795	26	2.0	26	88	0	75	31	23	17	27	1.97
15187508--15187589	26	3.2	26	94	0	146	28	24	20	26	1.99
15188421--15191165	905	3.0	896	86	2	3744	25	25	23	24	2.00
15191102--15191154	26	2.0	26	92	0	88	30	24	18	26	1.98
15190947--15191359	185	2.2	185	82	0	504	23	27	25	22	1.99
15191287--15191346	26	2.4	26	81	10	72	28	21	20	30	1.98
15194159--15194211	26	2.0	26	92	0	88	30	22	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15195051--15195103	26	2.0	26	85	0	70	26	22	22	28	1.99
15192163--15195840	904	4.1	900	84	4	4786	25	24	24	25	2.00
15195823--15195867	23	2.0	23	82	4	56	22	17	48	11	1.78
15196753--15196803	26	2.0	26	92	0	84	25	23	21	29	1.99
15197662--15197712	26	2.0	26	92	0	84	29	23	17	29	1.97
15199426--15199478	26	2.0	26	92	0	88	26	24	22	26	2.00
15200328--15200379	26	2.0	25	96	3	95	26	26	19	26	1.99
15195877--15201595	901	6.4	892	85	4	7098	25	24	24	25	2.00
15201559--15201624	31	2.1	31	100	0	132	33	18	9	39	1.82
15202729--15202781	26	2.0	26	92	0	88	28	24	20	26	1.99
15202754--15204544	877	2.0	875	85	4	2398	25	24	24	25	2.00
15204692--15204744	26	2.0	26	88	0	79	28	22	18	30	1.98
15204351--15204756	183	2.2	184	85	1	537	20	28	28	22	1.99
15205591--15205642	26	2.0	26	92	3	88	26	25	23	25	2.00
15207869--15207899	15	2.1	15	100	0	62	25	38	9	25	1.86
15207872--15207905	15	2.3	15	89	0	50	41	29	5	23	1.78
15209244--15209295	25	2.0	26	89	10	81	34	23	15	26	1.94
15210905--15211205	166	1.8	166	84	2	417	18	27	29	23	1.98
15212008--15212057	26	1.9	26	91	0	82	32	24	16	28	1.96
15213954--15214327	185	2.0	185	87	1	543	20	29	28	21	1.98
15215007--15215369	185	2.0	185	87	1	530	22	27	27	22	1.99
15216188--15216266	26	3.0	25	89	7	122	27	25	17	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15217109--15217161	26	2.0	26	85	0	70	32	28	16	22	1.96
15217837--15218154	171	1.9	171	83	2	415	20	31	27	20	1.97
15218028--15218426	185	2.2	185	86	1	568	22	27	27	22	1.99
15218365--15218417	26	2.0	26	92	0	88	32	26	16	24	1.97
15219979--15220028	26	1.9	26	100	0	100	24	26	20	30	1.98
15220868--15220923	26	2.2	26	93	0	94	32	23	17	26	1.97
15219299--15224516	904	5.8	893	85	4	6239	25	24	23	25	2.00
15224435--15224487	26	2.0	26	96	0	97	28	26	18	26	1.98
15224619--15224671	26	2.0	26	88	0	79	26	20	22	30	1.98
15225350--15225704	159	2.2	158	83	1	415	20	29	29	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195