genome.fa.s112.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  21  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4825438--4825467	4	7.5	4	100	0	60	26	46	26	0	1.53
4826024--4826063	2	20.0	2	100	0	80	0	50	0	50	1.00
4841098--4841128	4	7.8	4	92	0	53	25	29	45	0	1.54
4841616--4841666	9	5.6	9	76	4	57	52	1	0	45	1.12
4841607--4841684	28	2.8	28	88	3	113	55	2	0	42	1.13
4841632--4841693	15	4.2	15	79	4	63	50	1	0	48	1.10
4842143--4842184	12	3.6	12	78	18	52	66	2	0	30	1.04
4842811--4842848	11	3.5	11	88	0	58	55	28	0	15	1.41
4842811--4842852	22	2.0	21	90	4	66	50	30	0	19	1.48
4843078--4843160	25	3.4	25	81	4	73	25	34	6	33	1.80
4843093--4843178	25	3.5	25	82	3	102	19	34	8	37	1.82
4843936--4843976	11	3.7	11	83	0	55	51	9	0	39	1.35
4848207--4848231	4	6.2	4	100	0	50	72	0	28	0	0.86
4852369--4852420	26	1.9	28	84	7	72	65	5	0	28	1.16
4852400--4852465	22	3.0	22	70	14	55	54	4	1	39	1.30
4863111--4863142	17	1.9	17	93	6	57	56	43	0	0	0.99
4867648--4867685	19	2.0	20	89	5	60	31	0	2	65	1.06
4869001--4869034	18	1.9	18	88	5	52	47	0	5	47	1.26
4875784--4875821	2	19.5	2	94	5	69	47	0	0	52	1.00
4881713--4881796	44	1.9	44	85	0	114	26	23	17	32	1.97
4882098--4882436	170	2.0	169	91	4	558	25	21	19	33	1.97
4882614--4882964	175	2.0	172	95	1	630	25	21	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4883096--4883301	98	2.1	98	96	0	376	36	6	13	44	1.69
4883357--4883413	20	2.7	20	73	19	53	61	7	0	31	1.23
4883424--4883483	28	2.1	29	82	14	72	41	5	3	50	1.41
4884985--4885129	52	2.8	53	82	5	163	28	17	4	48	1.68
4885180--4885216	14	2.4	16	86	8	51	18	2	2	75	1.04
4885083--4885215	71	1.9	71	85	3	187	27	9	6	56	1.57
4885866--4885924	19	3.1	19	77	18	59	57	0	0	42	0.98
4885888--4885925	18	2.1	18	90	9	60	57	0	0	42	0.98
4912555--4912586	2	16.0	2	100	0	64	50	0	0	50	1.00
4923670--4923718	24	2.0	24	84	15	64	20	4	14	61	1.49
4923762--4923821	6	9.5	6	78	12	50	76	3	3	16	1.05
4925356--4925386	14	2.1	15	94	5	55	61	0	0	38	0.96
4932465--4932495	3	10.0	3	93	6	53	0	32	0	67	0.91
4934967--4935018	2	26.0	2	88	0	50	53	7	0	38	1.30
4938532--4938880	174	2.0	174	98	0	680	38	20	13	27	1.90
4949769--4950103	59	5.6	58	81	8	395	36	13	5	44	1.68
4949769--4950112	124	2.8	117	83	10	408	36	12	5	45	1.67
4950137--4950206	17	4.1	17	73	14	63	78	2	4	14	1.02
4950228--4950272	12	4.0	12	88	11	69	75	0	0	24	0.80
4950153--4950284	11	11.4	11	72	19	67	73	3	3	19	1.12
4950137--4950273	5	25.4	5	68	24	57	72	4	2	19	1.14
4950545--4950587	11	4.1	11	82	11	54	0	37	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4951134--4951185	22	2.5	20	79	14	52	65	3	7	23	1.35
4951192--4951227	8	4.4	8	89	6	54	83	2	0	13	0.76
4951202--4951279	4	19.2	4	76	17	63	73	0	1	25	0.91
4951193--4951351	17	8.9	17	67	23	62	71	2	3	22	1.14
4951190--4951237	6	7.8	6	77	13	53	81	2	0	16	0.79
4951161--4951231	23	2.9	23	77	8	70	74	2	2	19	1.07
4951232--4951291	29	2.1	29	84	6	77	63	1	5	30	1.25
4951320--4951352	16	2.1	16	94	5	59	84	3	0	12	0.72
4951320--4951352	8	4.1	8	85	14	50	84	3	0	12	0.72
4958829--4958879	27	1.9	26	84	11	68	43	7	5	43	1.57
4960389--4960448	22	2.7	22	76	2	66	63	1	0	35	1.05
4960901--4960930	2	15.0	2	100	0	60	50	0	0	50	1.00
4968691--4968726	11	3.0	12	88	12	56	41	0	0	58	0.98
4975726--4975916	95	2.0	95	82	7	235	31	14	28	25	1.94
4976491--4976576	27	3.2	27	68	12	77	43	4	11	40	1.62
4976499--4976583	29	3.1	27	67	23	70	47	4	9	38	1.57
4976376--4977049	175	3.8	177	81	10	628	48	5	10	35	1.61
4976302--4977049	59	12.7	58	75	14	515	48	5	9	35	1.60
4976303--4977041	291	2.5	289	79	9	754	49	5	9	35	1.60
4982963--4983021	29	2.0	31	83	6	77	57	0	1	40	1.09
4983105--4983178	28	2.7	28	87	6	98	48	0	1	50	1.09
4987683--4987722	9	4.6	9	90	6	64	87	10	2	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4987683--4987722	17	2.3	18	83	16	57	87	10	2	0	0.63
4996997--4997428	213	2.0	213	97	0	819	34	30	12	21	1.91
5008224--5008248	13	1.9	13	100	0	50	32	16	8	44	1.76
5011529--5011608	21	4.0	21	72	23	57	51	2	2	43	1.28
5020754--5020795	20	2.1	20	100	0	84	35	14	35	14	1.86
5025997--5026045	24	2.0	24	92	0	80	48	4	2	44	1.33
5026116--5026156	19	2.0	22	86	13	61	41	2	2	53	1.27
5030143--5030299	79	2.0	79	89	0	242	38	11	17	33	1.85
5030277--5030369	48	1.9	48	95	4	170	37	10	12	38	1.79
5039529--5039568	21	2.0	21	85	5	55	30	2	20	47	1.63
5043288--5043321	17	2.0	17	88	0	50	47	5	2	44	1.42
5044137--5044238	34	2.9	34	75	7	107	38	6	5	49	1.54
5052986--5053054	36	1.9	36	82	5	86	37	2	4	55	1.35
5053028--5053064	17	2.2	17	90	0	56	43	2	0	54	1.14
5053533--5053558	2	13.0	2	100	0	52	50	0	0	50	1.00
5054067--5054100	2	17.0	2	100	0	68	0	50	0	50	1.00
5054100--5054128	2	14.5	2	100	0	58	48	0	0	51	1.00
5055007--5055041	2	17.5	2	100	0	70	51	0	0	48	1.00
5067710--5067780	20	3.5	20	79	9	81	29	22	16	30	1.96
5067866--5067914	20	2.5	20	96	0	89	42	28	10	18	1.83
5068593--5068660	32	2.1	32	91	0	109	30	23	10	35	1.88
5068593--5068671	32	2.5	32	87	4	97	29	25	10	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5068715--5068785	32	2.2	32	79	0	79	26	25	8	39	1.84
5068748--5068907	60	2.7	59	82	3	167	26	23	12	36	1.91
5068623--5068845	92	2.4	92	78	7	247	25	25	13	35	1.93
5068805--5068890	28	2.8	31	71	18	81	27	25	12	33	1.93
5068806--5068905	32	3.2	32	72	11	100	29	26	11	34	1.90
5068806--5068932	60	2.1	60	85	2	166	29	22	12	35	1.91
5072787--5072859	34	2.2	33	90	2	110	46	35	0	17	1.49
5072801--5072880	7	11.7	7	68	5	56	41	36	1	21	1.61
5072812--5072859	20	2.4	21	89	6	73	47	37	0	14	1.44
5072817--5072891	27	2.7	27	71	6	71	41	36	1	21	1.62
5073066--5073175	45	2.4	45	92	0	175	27	14	10	47	1.78
5077216--5077250	3	11.7	3	93	0	61	34	31	0	34	1.58
5078631--5078689	24	2.4	24	82	2	73	32	3	1	62	1.21
5078651--5078707	30	1.9	30	92	0	96	31	5	1	61	1.28
5078632--5078709	30	3.1	24	70	22	70	33	3	1	61	1.22
5078707--5078743	20	1.9	20	88	5	58	48	0	0	51	1.00
5078739--5078824	30	2.9	29	80	15	86	50	1	1	47	1.16
5080667--5080708	17	2.5	17	84	7	50	78	0	7	14	0.95
5083754--5083799	24	2.0	23	83	12	58	52	0	10	36	1.37
5083785--5083817	17	1.9	17	93	0	57	42	9	9	39	1.68
5084333--5084386	24	2.2	24	83	6	63	62	3	0	33	1.12
5084548--5084604	23	2.5	23	97	0	105	36	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5085279--5085325	20	2.4	20	80	13	53	82	4	6	6	0.92
5085888--5085925	16	2.3	17	86	4	51	86	2	7	2	0.74
5086295--5086341	24	1.9	25	82	4	60	53	2	0	44	1.12
5086336--5086378	12	3.6	12	78	12	52	58	2	0	39	1.11
5086674--5086703	10	3.0	10	90	0	51	90	6	3	0	0.56
5086671--5086739	34	2.0	35	83	8	88	79	4	5	10	1.03
5086895--5086969	31	2.5	30	77	12	73	73	1	10	14	1.16
5088831--5088868	15	2.5	15	80	20	51	34	0	10	55	1.34
5088956--5089040	34	2.6	31	75	5	89	47	7	9	36	1.63
5088990--5089033	17	2.9	14	78	18	52	45	2	9	43	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195