genome.fa.s112.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  3  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500255--500302	2	24.0	2	91	0	78	54	0	0	45	0.99
501658--501684	3	9.0	3	100	0	54	66	0	0	33	0.92
502073--502119	21	2.2	22	88	11	71	42	0	12	44	1.42
502146--502180	14	2.6	13	86	4	52	31	0	0	68	0.90
506769--506835	2	34.5	2	89	5	102	52	0	0	47	1.00
506945--506996	15	3.6	15	73	19	56	55	3	1	38	1.29
506942--507014	28	2.5	31	86	8	100	56	4	1	38	1.27
506944--507010	14	4.5	15	76	14	59	55	4	1	38	1.29
506992--507105	11	10.5	11	67	1	50	51	6	3	38	1.44
506992--507158	66	2.5	66	80	2	176	48	7	5	38	1.54
506992--507158	22	7.6	22	81	4	158	48	7	5	38	1.54
507401--507502	22	4.6	22	75	4	89	50	4	8	35	1.55
507401--507626	66	3.4	66	75	10	174	49	6	9	34	1.61
507731--507861	21	6.3	20	73	7	84	32	7	10	48	1.66
508602--508647	17	2.7	17	79	0	56	50	0	2	47	1.13
510407--510653	121	2.0	121	92	0	404	44	9	4	41	1.56
510995--511056	22	2.8	22	85	0	70	51	3	8	37	1.48
511183--511267	22	3.9	22	88	0	98	47	3	9	40	1.53
511183--511260	11	7.1	11	69	5	50	46	3	8	41	1.54
511183--512108	44	21.5	43	66	14	155	47	5	9	37	1.59
511219--511299	22	3.7	23	80	9	71	44	2	9	43	1.50
511251--511460	61	3.4	60	73	14	217	47	5	8	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511324--511381	22	2.6	22	83	5	64	50	1	10	37	1.47
511334--511394	22	2.8	22	87	0	77	49	0	11	39	1.39
511451--511493	22	2.0	22	86	9	61	51	2	6	39	1.42
511207--511495	127	2.3	127	96	1	526	47	4	9	38	1.56
511574--511670	22	4.5	22	77	13	103	51	6	4	38	1.46
511574--511670	43	2.2	44	77	13	103	51	6	4	38	1.46
511548--511670	65	1.9	65	93	0	210	49	6	5	38	1.52
511745--511868	64	1.9	64	83	0	158	43	4	12	39	1.63
511724--512106	22	17.8	22	68	10	87	48	5	9	37	1.59
512107--512204	44	2.2	43	80	5	106	46	7	6	39	1.56
512676--512737	19	3.1	19	71	17	54	46	6	9	37	1.62
512553--513351	22	35.9	22	67	13	120	47	6	8	37	1.59
512675--512783	41	2.5	42	79	15	100	47	8	10	33	1.67
512969--513020	11	4.7	11	74	9	52	50	0	3	46	1.20
512969--513226	44	5.7	44	71	13	139	47	5	6	39	1.55
513090--513252	66	2.5	66	78	4	177	50	6	4	38	1.49
513211--513253	11	3.9	11	82	11	61	55	2	4	37	1.33
513625--513735	21	5.3	21	79	12	97	51	8	5	35	1.55
513625--513668	22	2.1	20	87	8	61	52	2	6	38	1.41
519560--519693	67	2.0	67	98	0	259	45	8	5	39	1.60
527713--527757	23	2.0	22	83	12	56	48	0	2	48	1.13
553261--553302	14	3.1	14	86	3	59	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555352--555384	2	17.0	2	93	6	59	48	0	0	51	1.00
563082--563321	133	1.8	132	82	4	313	31	14	17	36	1.90
570730--572280	357	4.4	356	84	2	1852	36	14	12	36	1.84
570734--572247	711	2.1	709	85	2	2047	37	13	12	36	1.84
573487--573531	22	2.0	22	100	0	90	20	13	17	48	1.80
576720--576981	123	2.1	124	88	5	388	38	15	13	31	1.87
577649--577685	16	2.4	16	90	4	58	10	5	0	83	0.79
577658--577776	6	18.8	6	73	18	91	19	3	0	77	0.91
577658--577776	46	2.7	45	83	14	158	19	3	0	77	0.91
577907--577949	13	3.2	13	83	6	50	16	4	4	74	1.16
578770--578807	4	9.5	4	83	11	51	26	0	0	73	0.83
578830--578907	5	14.8	5	78	21	72	16	6	0	76	0.98
578830--578907	17	4.5	17	78	16	81	16	6	0	76	0.98
578883--578907	13	1.9	13	100	0	50	20	0	0	80	0.72
578924--579500	59	9.7	58	79	7	611	44	7	11	35	1.70
578925--579500	118	4.8	118	87	4	818	44	7	11	35	1.70
579436--579474	15	2.4	17	83	12	55	48	5	0	46	1.24
580129--580171	2	21.5	2	100	0	86	48	0	0	51	1.00
580392--580466	29	2.5	30	82	2	98	57	2	4	36	1.32
580393--580466	30	2.5	29	82	2	94	58	2	4	35	1.31
590530--590568	3	13.0	3	94	0	69	66	2	0	30	1.05
592334--592366	16	2.1	16	94	0	57	12	12	27	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593802--593954	75	2.1	75	93	1	263	55	4	13	26	1.57
594233--594272	20	2.0	21	90	5	64	40	0	2	57	1.12
594725--594766	4	10.5	4	100	0	84	50	23	0	26	1.50
598652--598732	30	2.7	30	75	11	78	62	18	4	13	1.48
599117--599172	3	18.7	3	100	0	112	32	0	0	67	0.91
599730--599762	14	2.4	14	94	0	57	66	0	0	33	0.92
600066--600100	5	7.4	5	96	3	56	80	0	0	20	0.72
601203--601244	11	3.8	11	78	9	50	40	0	7	52	1.29
601254--601297	13	3.5	13	81	6	54	59	2	0	38	1.10
601254--601288	12	2.8	12	91	4	52	57	2	0	40	1.14
605939--605984	2	23.0	2	100	0	92	50	0	0	50	1.00
608560--608590	4	7.8	4	92	0	53	51	19	0	29	1.47
608559--608593	8	4.4	8	92	0	52	48	17	0	34	1.47
609958--610017	22	2.6	22	72	15	59	46	1	0	51	1.10
610038--610102	16	3.8	16	70	21	51	58	0	1	40	1.07
616570--616624	24	2.3	24	81	9	60	50	5	0	43	1.25
616670--616723	18	2.8	18	81	10	63	53	1	1	42	1.22
619402--619444	2	21.5	2	100	0	86	48	0	0	51	1.00
619598--619626	3	9.7	3	100	0	58	0	34	0	65	0.93
624001--624173	89	1.9	89	91	2	285	39	14	23	23	1.91
642485--642527	20	2.2	20	100	0	86	30	23	16	30	1.96
651545--651584	19	2.1	19	86	9	55	40	5	0	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651540--651589	19	2.4	21	75	21	52	40	4	0	56	1.18
653286--653329	10	4.2	10	83	11	52	52	2	0	45	1.13
653296--653338	22	2.0	21	86	4	59	55	0	0	44	0.99
654779--654808	9	3.2	9	95	4	51	63	0	0	36	0.95
654781--654810	10	3.1	10	95	4	53	63	0	0	36	0.95
657051--657101	21	2.5	21	81	9	52	47	0	9	43	1.36
657358--657403	21	2.1	22	92	4	76	45	2	0	52	1.13
657743--657855	59	1.9	59	85	0	154	39	11	14	34	1.82
662231--662470	126	1.9	126	86	3	340	45	13	10	30	1.77
663843--663869	6	4.5	6	100	0	54	85	0	0	14	0.61
666868--666898	2	15.5	2	100	0	62	51	48	0	0	1.00
669161--669192	2	16.0	2	100	0	64	50	0	0	50	1.00
676633--676659	14	1.9	14	100	0	54	51	0	0	48	1.00
677540--677605	25	2.7	26	88	6	93	36	0	0	63	0.95
677570--677610	15	2.6	16	92	3	66	41	0	0	58	0.98
678956--678987	3	10.7	3	93	0	55	0	28	0	71	0.86
682483--682527	23	2.0	23	82	8	56	46	6	0	46	1.29
682926--682981	25	2.2	25	93	0	94	41	1	0	57	1.09
683251--683299	21	2.3	21	86	6	64	55	2	0	42	1.11
684891--684947	27	2.1	28	86	3	80	38	17	19	24	1.93
693671--693716	2	23.5	2	93	4	76	45	0	0	54	0.99
728185--728215	12	2.7	12	95	5	55	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728223--728247	11	2.3	11	100	0	50	36	0	0	64	0.94
729423--729483	30	2.0	31	84	9	81	47	1	0	50	1.10
730737--730770	3	11.3	3	93	0	59	29	0	2	67	1.05
733480--733521	19	2.3	18	87	4	57	69	0	0	30	0.89
733538--733572	10	3.5	10	88	0	52	74	0	0	25	0.82
734184--734280	46	2.1	46	84	7	126	47	12	15	24	1.80
738547--738579	2	17.0	2	93	6	59	48	0	51	0	1.00
740060--740222	84	1.9	84	88	0	245	42	15	14	27	1.85
742597--742628	3	10.7	3	100	0	64	68	0	0	31	0.90
744271--744303	15	2.2	15	94	0	57	12	15	0	72	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195