genome.fa.s112.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  92  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16958200--16958252	26	2.0	26	96	0	97	26	18	26	28	1.98
16958430--16958454	12	2.1	12	100	0	50	8	28	64	0	1.22
16959085--16959145	26	2.4	26	89	5	90	22	21	27	27	1.99
16957326--16960959	893	4.1	888	84	3	4521	25	23	24	26	2.00
16960597--16961311	360	2.0	361	88	1	1056	26	27	24	20	1.99
16961241--16961293	26	2.0	26	96	0	97	26	22	24	26	2.00
16962033--16962088	26	2.2	26	100	0	112	30	19	21	28	1.98
16968783--16969651	470	1.9	469	90	2	1397	25	19	23	30	1.98
16969926--16970020	47	2.0	47	89	0	145	17	35	23	23	1.95
16970017--16970067	26	2.0	26	96	0	93	31	27	17	23	1.97
16971753--16971805	26	2.0	26	88	0	79	28	16	26	28	1.97
16969973--16984354	896	16.1	891	83	6	16705	25	23	24	25	2.00
16973554--16973632	26	3.0	26	94	3	133	26	17	25	30	1.97
16974478--16974528	26	2.0	26	88	0	75	29	15	25	29	1.96
16975368--16975420	26	2.0	26	92	0	88	26	20	24	28	1.99
16976272--16976324	26	2.0	26	88	0	79	26	22	24	26	2.00
16977168--16977220	26	2.0	26	92	7	90	28	22	22	26	1.99
16978057--16978109	26	2.0	26	92	0	88	30	20	22	26	1.98
16978939--16978991	26	2.0	26	100	0	106	26	20	26	26	1.99
16980704--16980756	26	2.0	26	85	0	70	28	18	20	32	1.97
16981609--16981659	26	2.0	26	96	0	93	29	19	25	25	1.99
16983369--16983421	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16984271--16984323	26	2.0	26	96	0	97	26	18	26	28	1.98
16985853--16985946	26	3.6	26	100	0	188	23	19	30	26	1.98
16984985--16986844	953	2.0	943	89	2	2888	25	24	24	25	2.00
16985902--16991971	902	6.8	900	87	4	7886	25	23	24	25	2.00
16987701--16987753	26	2.0	26	92	0	88	26	16	26	30	1.97
16988580--16988632	26	2.0	26	96	0	97	24	20	28	26	1.99
16989463--16989515	26	2.0	26	88	0	79	26	18	26	28	1.98
16991243--16991295	26	2.0	26	88	0	79	26	22	22	28	1.99
16993540--16993592	26	2.0	26	100	0	106	26	20	26	26	1.99
16994445--16994497	26	2.0	26	96	0	97	26	18	26	28	1.98
16993789--16995288	716	2.1	720	86	3	2082	26	23	23	27	2.00
16996063--16996462	185	2.2	185	84	1	525	24	27	26	22	2.00
16996242--16998421	898	2.4	900	88	2	3221	25	23	25	25	2.00
16998058--16998110	26	2.0	26	88	0	79	30	18	24	26	1.98
16998729--16998779	26	2.0	26	96	0	93	31	19	19	29	1.97
16999596--16999651	26	2.2	26	93	0	94	28	17	23	30	1.97
17000499--17000551	26	2.0	26	88	0	79	30	22	22	24	1.99
16999049--17005539	896	7.2	896	85	4	8014	25	23	24	26	2.00
17001396--17001447	26	2.0	26	92	0	86	28	21	25	25	1.99
17002292--17002343	26	2.0	26	88	0	77	28	19	25	26	1.98
17004059--17004137	26	3.0	26	92	7	142	26	20	26	26	1.99
17004985--17005037	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17005083--17006006	468	2.0	466	88	2	1390	24	21	23	29	1.99
17008203--17010628	712	3.4	713	88	2	3464	25	23	24	26	2.00
17010919--17010974	26	2.2	26	100	0	112	26	19	25	28	1.99
17011823--17011874	26	2.0	26	96	0	95	28	19	25	26	1.98
17010622--17013848	902	3.6	900	84	3	4209	25	24	25	24	2.00
17013930--17013980	26	2.0	26	92	0	84	27	19	25	27	1.99
17013565--17014155	313	1.9	313	84	4	789	23	28	27	20	1.99
17016595--17016647	26	2.0	26	92	0	88	28	18	24	28	1.98
17014797--17019296	905	5.0	900	86	3	5984	25	24	25	25	2.00
17019978--17020028	26	2.0	26	100	0	102	27	11	29	31	1.92
17020851--17020902	26	2.0	26	96	0	95	26	17	26	28	1.97
17020115--17022570	896	2.7	897	86	3	3404	26	23	24	25	2.00
17024003--17024036	17	2.0	17	100	0	68	41	11	17	29	1.85
17024343--17024392	26	1.9	26	95	0	91	28	18	28	26	1.98
17025109--17025141	17	1.9	17	93	0	57	21	42	21	15	1.89
17025114--17025147	17	2.0	17	88	0	50	20	44	20	14	1.87
17026151--17026203	26	2.0	26	92	0	88	28	18	26	26	1.98
17027038--17027087	26	1.9	26	95	0	91	30	22	24	24	1.99
17022572--17034166	889	13.0	887	82	7	12657	25	24	24	25	2.00
17029652--17029704	26	2.0	26	96	0	97	30	18	22	28	1.98
17030550--17030600	26	2.0	26	92	0	84	27	15	27	29	1.96
17031430--17031482	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17032330--17032382	26	2.0	26	96	0	97	26	22	26	24	2.00
17027912--17034166	896	7.0	898	83	5	7266	25	23	24	25	2.00
17034785--17034860	26	2.9	26	92	0	125	28	15	25	30	1.96
17036555--17036613	26	2.3	26	91	5	95	25	18	27	28	1.98
17034811--17040194	888	6.0	886	84	6	6758	25	24	24	25	2.00
17037459--17037511	26	2.0	26	92	0	88	30	18	24	26	1.98
17038354--17038406	26	2.0	26	92	0	88	26	16	26	30	1.97
17039261--17039314	26	2.0	27	89	3	83	27	25	22	24	2.00
17041344--17052013	886	12.0	894	84	5	12484	25	23	24	25	2.00
17042970--17043002	17	1.9	17	93	0	57	21	42	21	15	1.89
17042975--17043008	17	2.0	17	88	0	50	20	44	20	14	1.87
17043544--17043601	26	2.2	27	81	3	64	20	10	10	58	1.60
17044007--17044062	27	2.1	27	93	0	94	26	21	25	26	1.99
17044892--17044944	26	2.0	26	96	0	97	28	20	24	26	1.99
17047509--17047561	26	2.0	26	96	0	97	30	18	22	28	1.98
17048408--17048458	26	2.0	26	92	0	84	27	15	27	29	1.96
17049293--17049345	26	2.0	26	96	0	97	28	20	24	26	1.99
17050196--17050248	26	2.0	26	96	0	97	26	22	26	24	2.00
17051082--17051134	26	2.0	26	92	0	88	26	16	26	30	1.97
17052636--17052711	26	2.9	26	92	0	125	28	15	25	30	1.96
17054447--17054497	26	2.0	26	96	0	93	27	17	27	27	1.98
17055345--17055397	26	2.0	26	92	0	88	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17056243--17056295	26	2.0	26	92	0	88	26	16	26	30	1.97
17052662--17058175	900	6.2	897	86	2	7332	25	24	25	25	2.00
17057147--17057199	26	2.0	26	96	0	97	28	18	26	26	1.98
17058034--17058086	26	2.0	26	88	0	79	28	20	24	26	1.99
17058197--17060214	725	2.8	726	92	1	3321	26	22	24	27	1.99
17060445--17062651	703	3.1	700	86	5	2990	25	23	23	26	2.00
17063490--17063516	4	6.8	4	100	0	54	0	25	74	0	0.83
17062776--17064174	723	1.9	727	90	1	2214	25	23	24	26	2.00
17064169--17064218	26	2.0	26	92	4	84	30	22	20	28	1.98
17064352--17064404	26	2.0	26	88	0	79	28	16	24	30	1.97
17064141--17064563	184	2.3	185	84	4	534	21	26	28	23	1.99
17065245--17065297	26	2.0	26	92	0	88	26	16	26	30	1.97
17064349--17073267	900	10.0	900	86	3	11454	25	24	24	25	2.00
17068817--17068869	26	2.0	26	92	0	88	28	16	28	26	1.97
17069723--17069773	26	2.0	26	96	0	93	25	15	27	31	1.96
17070582--17070876	159	1.9	159	82	4	371	23	27	31	18	1.97
17072377--17072429	26	2.0	26	100	0	106	26	20	26	26	1.99
17070611--17073267	904	3.0	895	87	3	3791	25	24	24	25	2.00
17073996--17074038	22	2.0	22	85	0	59	18	23	25	32	1.97
17074431--17074495	17	3.8	18	74	11	57	13	7	3	75	1.14
17074515--17074787	59	4.7	58	85	9	369	45	6	12	36	1.67
17074513--17074787	116	2.4	116	86	8	380	45	6	12	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17080291--17080325	16	2.3	15	90	9	54	48	5	40	5	1.51
17087732--17087802	8	8.6	8	82	10	72	78	1	5	14	0.99
17087729--17087796	17	3.9	17	82	3	73	76	1	5	16	1.05
17087740--17087796	18	3.2	18	87	2	80	78	1	3	15	0.96
17087733--17087796	25	2.5	25	85	7	85	78	1	4	15	1.00
17088811--17089139	42	7.9	42	89	2	520	24	16	22	37	1.94
17088811--17089139	83	3.9	83	91	1	532	24	16	22	37	1.94
17089124--17089155	16	2.0	16	100	0	64	6	25	37	31	1.81
17089082--17089196	58	2.0	57	98	1	221	18	17	27	36	1.93
17089040--17089238	99	2.0	100	94	1	346	21	16	24	37	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195