genome.fa.s112.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  88  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16483844--16483883	20	2.0	20	90	0	62	37	25	20	17	1.94
16483854--16483892	20	2.0	20	89	0	60	38	25	20	15	1.92
16483949--16484001	26	2.0	26	96	0	97	28	26	18	26	1.98
16484839--16484891	26	2.0	26	96	0	97	30	26	15	28	1.96
16485690--16485740	26	2.0	26	92	0	84	27	21	19	31	1.97
16486570--16486621	25	2.0	26	88	3	79	28	25	17	28	1.97
16483893--16496027	907	13.9	870	78	10	10648	25	24	23	25	2.00
16489165--16489217	26	2.0	26	92	0	88	28	26	22	22	1.99
16490071--16490123	26	2.0	26	92	0	88	28	24	18	28	1.98
16490978--16491030	26	2.0	26	100	0	106	26	26	20	26	1.99
16491878--16491927	26	1.9	26	100	0	100	24	28	20	28	1.99
16493621--16493673	26	2.0	26	100	0	106	26	26	20	26	1.99
16495340--16495390	26	2.0	26	92	0	84	31	23	15	29	1.95
16495315--16496787	734	2.0	738	88	2	2172	27	23	22	26	2.00
16500250--16500300	26	2.0	26	96	0	93	29	29	13	27	1.94
16499381--16502101	897	3.0	891	87	2	3762	26	24	23	25	2.00
16501146--16501198	26	2.0	26	89	7	81	28	26	18	26	1.98
16501887--16502282	185	2.1	185	81	1	454	22	28	25	22	1.99
16502231--16502282	26	2.0	26	88	0	77	26	25	19	28	1.98
16503134--16503186	26	2.0	26	92	0	88	26	26	18	28	1.98
16504757--16504809	26	2.0	26	88	0	79	30	28	16	24	1.97
16505651--16505703	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16504018--16509233	894	5.9	898	83	4	5822	25	24	23	25	2.00
16507398--16507450	26	2.0	26	92	0	88	28	26	20	24	1.99
16508297--16508347	26	2.0	26	100	0	102	27	25	19	27	1.99
16509190--16509242	26	2.0	26	92	0	88	28	24	20	26	1.99
16509741--16510127	57	6.7	58	90	5	592	34	12	7	45	1.70
16509741--16510137	56	6.9	56	88	6	525	34	12	7	46	1.69
16510577--16510632	20	2.9	19	76	5	58	28	16	25	30	1.96
16511110--16511144	18	1.9	18	88	0	52	65	5	11	17	1.43
16511201--16511229	3	9.7	3	100	0	58	68	0	0	31	0.89
16511330--16511411	36	2.3	35	89	2	119	19	26	29	24	1.98
16511343--16511412	35	2.0	36	94	2	124	20	24	30	25	1.99
16511503--16511571	17	3.9	17	81	14	70	2	0	14	82	0.78
16511510--16511565	12	4.7	12	81	14	62	3	0	14	82	0.81
16511503--16511572	8	7.9	8	76	19	59	2	0	15	81	0.81
16511503--16511571	9	7.4	10	73	14	67	2	0	14	82	0.78
16511579--16512124	42	13.1	42	92	3	883	36	23	16	23	1.94
16511579--16512124	83	6.6	83	92	2	868	36	23	16	23	1.94
16513123--16513158	15	2.3	16	90	4	56	8	13	0	77	0.98
16513123--16513200	8	9.6	8	80	13	70	16	7	0	75	1.02
16513156--16513200	23	1.9	24	90	4	74	22	2	0	75	0.91
16513155--16513199	15	2.9	15	90	6	63	22	2	0	75	0.91
16523590--16523866	57	4.7	58	88	6	416	34	11	7	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16523907--16523944	19	2.1	19	85	5	51	76	0	7	15	1.01
16525991--16526043	26	2.0	26	100	0	106	26	26	20	26	1.99
16525153--16533922	900	9.8	899	86	3	11796	25	24	24	25	2.00
16529558--16529610	26	2.0	26	92	0	88	26	28	16	28	1.97
16532232--16532282	26	2.0	26	92	0	84	31	25	15	27	1.96
16533130--16533182	26	2.0	26	92	0	88	30	24	18	26	1.98
16533156--16535123	714	2.8	710	90	1	3154	26	23	23	26	2.00
16536089--16536193	26	4.0	26	92	0	165	27	25	19	27	1.98
16537035--16537087	26	2.0	26	96	0	97	28	26	18	26	1.98
16540452--16540504	26	2.0	26	96	0	97	26	24	20	28	1.99
16542237--16542287	26	2.0	26	96	0	93	31	25	17	25	1.97
16544020--16544072	26	2.0	26	88	0	79	30	28	15	26	1.96
16544923--16544975	26	2.0	26	96	0	97	28	26	18	26	1.98
16537479--16551458	899	15.7	902	85	3	17897	25	25	24	25	2.00
16547592--16547644	26	2.0	26	96	0	97	26	24	20	28	1.99
16548498--16548547	26	1.9	26	91	0	82	26	24	20	30	1.98
16549399--16549451	26	2.0	26	92	0	88	28	24	18	28	1.98
16551137--16551189	26	2.0	26	92	0	88	26	26	18	28	1.98
16551659--16551711	26	2.0	26	96	0	97	26	28	20	24	1.99
16552551--16552603	26	2.0	26	92	0	88	28	24	16	30	1.97
16551460--16566698	904	16.9	903	78	8	13552	25	24	24	25	2.00
16555259--16555311	26	2.0	26	88	0	79	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16556168--16556217	26	1.9	26	95	0	91	24	24	22	30	1.99
16557067--16557119	26	2.0	26	96	0	97	28	26	18	26	1.98
16557969--16558021	26	2.0	26	96	0	97	28	24	20	26	1.99
16558861--16558912	25	2.0	26	88	3	79	28	23	19	28	1.98
16560943--16560995	26	2.0	26	100	0	106	26	26	20	26	1.99
16564324--16564376	26	2.0	26	100	0	106	26	26	20	26	1.99
16573335--16573359	12	2.1	12	100	0	50	0	56	28	16	1.41
16573537--16573589	26	2.0	26	88	0	79	28	22	20	28	1.99
16575304--16575356	26	2.0	26	100	0	106	26	26	20	26	1.99
16574292--16575993	894	1.9	895	88	2	2567	26	25	23	25	2.00
16577574--16577626	26	2.0	26	96	0	97	30	24	16	28	1.97
16577415--16577804	185	2.1	184	84	1	485	21	26	27	24	1.99
16577759--16577831	26	2.8	26	95	0	137	27	24	19	28	1.98
16580328--16580565	59	4.0	58	87	9	322	33	11	8	46	1.70
16580328--16580565	119	2.0	119	86	8	333	33	11	8	46	1.70
16580580--16580638	16	3.6	16	80	13	59	76	1	6	15	1.07
16580610--16580650	20	2.0	22	90	9	68	80	2	7	9	0.99
16580594--16580653	17	3.4	17	72	17	50	78	1	6	13	1.02
16580671--16580713	4	10.8	4	80	9	52	72	4	2	20	1.14
16581542--16581587	18	2.5	18	82	3	56	65	4	8	21	1.38
16581714--16581766	28	1.9	27	85	11	72	67	3	1	26	1.17
16581761--16581803	17	2.5	17	76	0	50	79	4	11	4	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16581968--16582025	8	6.6	9	78	13	50	5	0	8	86	0.71
16581973--16582012	9	4.4	9	87	9	55	7	0	7	85	0.76
16581968--16582019	10	5.6	9	88	8	61	5	0	7	86	0.70
16582033--16582291	41	6.3	41	93	1	439	35	24	17	23	1.95
16582236--16582349	58	2.0	58	98	0	219	31	27	14	26	1.95
16582194--16582391	100	2.0	100	96	2	371	33	25	16	24	1.96
16582294--16582635	42	8.2	42	91	6	561	35	22	18	23	1.96
16583850--16583915	7	9.3	7	79	12	64	4	16	0	78	0.90
16583868--16583904	10	3.6	10	88	3	56	0	13	0	86	0.57
16583868--16583907	11	3.7	11	83	6	55	0	15	0	85	0.61
16583852--16583914	8	8.6	8	79	13	50	4	14	0	80	0.86
16583960--16584015	25	2.2	25	100	0	112	25	23	17	33	1.96
16587832--16588073	60	4.0	60	82	10	280	34	12	7	45	1.71
16587832--16588071	116	2.0	120	90	8	380	34	12	7	45	1.71
16588080--16588121	22	1.9	22	90	9	68	71	0	11	16	1.14
16588103--16588217	17	6.8	16	69	19	58	73	3	3	20	1.13
16588081--16588164	39	2.2	39	82	8	100	75	1	8	15	1.10
16588103--16588164	21	3.4	17	75	18	61	77	1	6	14	1.04
16588182--16588216	4	8.5	4	87	6	52	77	2	0	20	0.90
16588182--16588217	13	2.8	13	91	4	56	77	2	0	19	0.88
16588104--16588216	22	5.1	21	70	17	70	72	3	3	20	1.14
16589000--16589047	18	2.6	18	83	3	60	66	4	8	20	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16589066--16589177	31	3.5	31	73	16	84	66	6	0	26	1.21
16589188--16589229	3	14.0	3	81	18	52	69	2	0	28	1.01
16589231--16589266	15	2.4	15	90	9	56	83	0	16	0	0.65
16589231--16589266	7	4.9	7	93	6	54	83	0	16	0	0.65
16590667--16590719	26	2.0	26	100	0	106	26	26	20	26	1.99
16590693--16593606	718	4.1	717	87	2	4055	26	24	23	25	2.00
16593710--16593788	26	3.0	26	92	0	131	27	25	18	27	1.98
16593762--16595948	714	3.1	706	88	2	3179	26	23	23	26	2.00
16597828--16597880	26	2.0	26	92	0	88	24	24	18	32	1.97
16595183--16599765	899	5.1	899	89	3	6207	25	25	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195