genome.fa.s112.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  185  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32128450--32128513	25	2.5	26	75	14	71	42	0	1	56	1.09
32128471--32128517	23	2.1	22	84	11	60	42	0	4	53	1.20
32129843--32129872	2	15.0	2	92	0	51	46	0	0	53	1.00
32131674--32131721	14	3.5	13	83	11	53	35	2	0	62	1.07
32131674--32131717	13	3.3	14	84	9	56	34	2	0	63	1.07
32132155--32132207	26	2.0	27	92	3	90	52	0	0	47	1.00
32132233--32132278	19	2.4	18	85	7	56	56	0	0	43	0.99
32132306--32132434	15	8.6	15	70	16	97	39	2	1	56	1.21
32132362--32132436	18	4.5	17	71	20	68	38	2	1	57	1.21
32132323--32132442	33	3.7	31	78	9	91	40	3	1	55	1.27
32132299--32132428	59	2.3	55	76	19	133	37	3	1	57	1.24
32135137--32135167	16	1.9	16	93	0	53	48	6	32	12	1.67
32136897--32136945	20	2.5	19	78	18	55	57	4	0	38	1.18
32137901--32137959	25	2.4	24	78	13	66	69	3	1	25	1.13
32138402--32138439	19	2.0	20	94	5	69	31	2	7	57	1.41
32138296--32138579	145	1.9	147	96	1	527	40	3	6	50	1.44
32139018--32139049	14	2.3	15	84	15	50	21	0	0	78	0.76
32141720--32141775	23	2.3	26	90	9	91	46	0	0	53	1.00
32141863--32141902	2	20.0	2	100	0	80	50	0	0	50	1.00
32141904--32141932	2	14.5	2	100	0	58	48	0	51	0	1.00
32147445--32147477	9	3.7	9	95	0	57	60	0	6	33	1.21
32149894--32149929	17	2.2	16	90	5	54	66	8	0	25	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32150288--32150333	20	2.3	20	84	0	56	41	0	2	56	1.11
32163975--32164030	27	2.0	28	83	10	71	62	0	5	32	1.18
32167203--32167237	14	2.4	15	90	4	54	51	0	0	48	1.00
32168448--32168484	14	2.7	15	88	12	53	37	0	2	59	1.12
32173980--32174008	14	2.1	14	100	0	58	31	6	34	27	1.83
32177840--32177871	2	16.0	2	100	0	64	0	50	0	50	1.00
32178486--32178522	2	18.5	2	100	0	74	0	51	0	48	1.00
32180749--32180788	21	1.9	21	85	10	55	47	5	2	45	1.38
32180790--32180888	29	3.3	29	85	2	126	49	5	3	42	1.40
32180787--32180888	30	3.4	30	84	2	125	50	4	2	42	1.39
32180805--32180925	59	2.1	58	81	4	136	53	4	2	39	1.33
32192796--32192848	27	2.0	27	85	7	72	39	0	5	54	1.24
32192814--32192870	23	2.5	22	78	13	71	42	0	1	56	1.10
32195022--32195081	27	2.2	26	85	5	75	46	6	3	43	1.46
32198179--32198235	10	6.1	10	72	15	50	49	0	0	50	1.00
32199096--32199130	2	17.5	2	93	0	61	45	0	2	51	1.16
32209340--32209389	18	2.7	18	84	6	55	56	2	0	42	1.11
32209518--32209577	29	2.2	26	82	11	68	65	1	5	28	1.23
32216347--32216373	2	13.5	2	100	0	54	48	0	0	51	1.00
32220552--32220650	50	2.0	50	95	0	180	38	11	12	38	1.78
32239424--32239465	19	2.2	20	87	12	61	40	2	0	57	1.12
32239431--32239511	30	2.8	29	71	23	71	41	2	1	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32244720--32244769	24	2.1	24	96	0	91	34	22	14	30	1.93
32246764--32246799	16	2.2	16	100	0	72	19	27	19	33	1.96
32251704--32251728	13	1.9	13	100	0	50	36	8	0	56	1.29
32256160--32256226	18	3.8	18	72	18	52	53	1	0	44	1.09
32256153--32256228	34	2.2	32	80	11	89	52	1	0	46	1.08
32256172--32256243	32	2.2	33	82	12	85	56	4	0	38	1.18
32261458--32261492	2	17.5	2	100	0	70	51	0	0	48	1.00
32262925--32262974	21	2.4	21	100	0	100	42	18	12	28	1.85
32279889--32279944	27	2.0	27	86	6	76	60	0	3	35	1.14
32288963--32289001	18	2.1	18	85	9	51	64	0	0	35	0.94
32298229--32298254	13	2.0	13	100	0	52	23	23	23	30	1.99
32311434--32311662	115	2.0	114	93	2	388	46	20	14	18	1.84
32313958--32313998	14	2.9	15	89	7	59	70	7	0	21	1.11
32324720--32324770	23	2.2	24	82	10	61	49	0	0	50	1.00
32325668--32325703	18	2.1	17	89	5	54	47	0	0	52	1.00
32328085--32328145	18	3.5	18	80	4	63	47	0	0	52	1.00
32327929--32328322	191	2.1	191	95	0	709	42	3	8	45	1.51
32328276--32328324	18	2.7	18	83	0	62	51	2	0	46	1.12
32330579--32330717	13	11.4	13	68	26	65	47	9	6	36	1.62
32330686--32330739	16	3.1	16	73	19	54	48	7	5	38	1.55
32330716--32330761	24	1.9	24	82	8	58	50	10	4	34	1.57
32330836--32330919	19	4.0	21	72	20	59	50	10	3	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32330846--32330907	24	2.6	24	82	7	72	50	9	3	37	1.52
32331087--32331154	20	3.2	20	77	8	64	55	10	2	30	1.48
32331109--32331169	24	2.5	24	82	10	79	55	9	1	32	1.42
32331229--32331271	21	2.0	21	86	0	59	55	9	2	32	1.44
32331216--32331266	25	2.0	25	85	7	68	58	7	1	31	1.37
32331257--32331304	16	2.9	16	78	9	53	54	6	4	35	1.45
32331311--32331345	17	2.1	17	89	10	54	57	11	5	25	1.56
32331909--32331943	13	2.8	13	86	4	54	71	8	0	20	1.11
32335103--32335127	2	12.5	2	100	0	50	52	0	0	48	1.00
32336007--32336146	70	2.0	70	88	0	208	40	11	12	36	1.79
32339500--32339549	17	2.8	18	74	17	50	26	0	4	70	1.05
32342404--32342488	24	3.7	26	76	19	66	47	14	4	34	1.65
32342528--32342590	3	21.0	3	100	0	126	66	0	0	33	0.92
32342589--32342614	3	8.7	3	100	0	52	34	30	0	34	1.58
32342610--32342662	18	2.9	18	82	0	70	49	11	5	33	1.62
32342639--32342684	24	1.9	24	82	8	58	50	15	4	30	1.63
32342612--32342670	18	3.2	19	80	9	68	49	13	5	32	1.64
32342673--32342783	54	2.1	54	98	0	213	54	10	8	27	1.63
32342853--32342901	25	2.0	24	92	4	80	51	14	4	30	1.61
32342885--32342980	28	3.6	25	71	17	68	63	8	2	26	1.34
32343004--32343215	55	3.9	54	82	0	244	55	12	3	27	1.54
32343004--32343203	110	1.8	109	90	1	319	56	12	3	28	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32343126--32343221	20	5.1	20	70	23	75	56	10	4	29	1.52
32343116--32343216	32	3.5	30	72	25	101	56	11	4	26	1.55
32343141--32343186	23	2.0	23	87	4	67	60	8	2	28	1.38
32343200--32343359	24	7.0	24	68	20	119	54	8	3	33	1.49
32343285--32343348	20	3.2	20	77	18	69	53	9	6	31	1.58
32343200--32343315	47	2.4	47	82	12	146	55	7	2	34	1.43
32346114--32346154	20	2.0	20	90	9	66	4	19	0	75	0.98
32355047--32355127	41	2.0	41	90	0	126	29	12	20	37	1.90
32367987--32368050	21	3.0	21	79	9	58	45	1	0	53	1.10
32374031--32374082	21	2.5	21	90	6	79	50	0	0	50	1.00
32374031--32374082	22	2.5	22	93	6	90	50	0	0	50	1.00
32374050--32374119	30	2.3	30	77	0	77	57	1	0	41	1.08
32374099--32374139	20	2.0	20	86	13	57	65	0	0	34	0.93
32380131--32380165	2	17.5	2	100	0	70	48	0	0	51	1.00
32394089--32394230	62	2.3	63	81	3	153	38	9	9	42	1.70
32399107--32399148	8	5.4	8	85	2	59	40	0	0	59	0.97
32399099--32399150	16	3.3	16	86	2	70	44	0	0	55	0.99
32399096--32399144	24	2.0	24	84	7	64	44	0	0	55	0.99
32408360--32408404	23	1.9	23	86	4	63	55	4	0	40	1.20
32411059--32411092	17	1.9	18	88	5	52	41	0	2	55	1.15
32412469--32412556	24	3.6	24	66	22	58	36	9	0	54	1.32
32419519--32419552	17	2.0	17	88	0	50	76	0	14	8	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32420303--32420506	102	2.0	99	83	4	257	34	4	4	55	1.43
32420616--32420662	23	2.0	23	92	8	78	48	12	17	21	1.79
32420738--32420767	2	15.0	2	100	0	60	50	0	0	50	1.00
32421210--32421237	1	28.0	1	100	0	56	100	0	0	0	0.00
32423273--32423313	20	2.0	20	100	0	82	39	9	14	36	1.79
32428674--32428728	27	2.0	28	82	10	69	45	0	1	52	1.11
32432686--32432728	17	2.5	17	85	7	52	74	4	18	2	1.10
32432682--32432728	21	2.2	21	85	7	60	76	4	17	2	1.04
32438303--32438343	4	10.2	4	94	0	73	24	21	0	53	1.46
32438941--32438983	18	2.5	17	88	7	61	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195