Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  183  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31378799--31378838
21
1.9
21
90
10
64
42
0
0
57
0.98
31394125--31394179
27
2.0
27
92
0
92
41
12
12
32
1.81
31399057--31399096
18
2.2
18
90
0
62
42
7
15
35
1.75
31403154--31403187
2
17.5
2
93
6
61
50
0
0
50
1.00
31412280--31412339
27
2.4
24
81
13
68
40
1
0
58
1.08
31412291--31412459
59
2.8
57
79
12
162
42
1
1
55
1.18
31412291--31412434
30
5.0
29
75
15
129
40
1
1
56
1.17
31412408--31412468
17
3.6
17
75
4
61
42
0
3
54
1.17
31412418--31412477
18
3.4
18
73
11
52
48
0
3
48
1.18
31413398--31413430
15
2.1
17
88
11
52
66
6
0
27
1.15
31414962--31414995
16
2.1
16
94
0
59
44
0
8
47
1.34
31416331--31416364
9
3.7
9
88
7
50
20
2
0
76
0.92
31417284--31417322
20
2.0
20
90
10
62
43
0
0
56
0.99
31420945--31421178
116
2.0
117
94
4
413
31
11
6
50
1.65
31421962--31422010
24
2.0
24
84
7
64
24
6
0
69
1.11
31421975--31422028
24
2.2
24
90
6
81
25
7
0
66
1.17
31424114--31424163
25
2.0
25
92
0
82
10
0
68
22
1.19
31424416--31424455
19
2.0
20
85
4
55
17
0
12
70
1.18
31430174--31430279
18
6.1
18
69
8
76
33
4
27
34
1.78
31430176--31430283
36
3.1
36
71
9
89
35
4
25
34
1.77
31434291--31434330
19
2.0
20
85
4
55
70
12
0
17
1.18
31434536--31434566
12
2.6
12
94
0
53
70
0
0
29
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31442576--31442673
49
2.0
49
91
0
160
38
16
16
28
1.90
31449697--31449737
22
1.9
21
90
5
64
39
12
7
41
1.70
31455786--31455834
24
2.0
24
84
7
64
61
6
10
22
1.50
31465809--31465857
18
2.6
18
80
9
53
61
4
4
30
1.33
31474142--31474215
30
2.5
29
87
12
107
33
8
2
55
1.44
31474311--31474386
28
2.7
29
81
6
84
42
0
17
40
1.49
31475879--31475904
13
2.0
13
100
0
52
30
0
0
69
0.89
31479390--31479426
2
18.5
2
100
0
74
48
0
51
0
1.00
31483208--31483249
18
2.4
18
80
4
50
9
9
9
71
1.32
31483242--31483298
3
19.0
3
100
0
114
33
0
0
66
0.92
31495910--31495947
15
2.5
15
91
0
58
34
31
2
31
1.72
31496053--31496103
3
17.3
3
87
4
77
29
37
1
31
1.69
31506456--31506518
24
2.6
23
76
18
74
42
4
1
50
1.32
31507731--31507774
18
2.4
18
84
3
52
27
11
0
61
1.30
31509120--31509157
18
2.2
18
85
4
51
68
2
2
26
1.16
31509214--31509250
13
2.8
13
91
0
65
51
0
0
48
1.00
31528301--31528328
14
2.0
14
100
0
56
50
14
14
21
1.78
31538082--31538112
2
15.5
2
93
0
53
51
45
0
3
1.17
31543412--31543456
24
1.9
23
86
4
63
35
8
17
37
1.81
31547732--31547829
13
7.7
13
75
6
67
57
19
4
19
1.57
31547750--31547822
25
2.9
25
77
4
67
54
20
4
20
1.60
31547813--31547921
33
3.3
33
85
5
148
49
21
5
23
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31547722--31547836
13
9.0
13
71
11
58
54
18
5
21
1.62
31547898--31547940
19
2.2
20
91
4
70
41
20
11
25
1.86
31555294--31555318
13
1.9
13
100
0
50
44
8
16
32
1.76
31556665--31556702
11
3.4
12
82
17
55
71
0
0
28
0.87
31562378--31562416
8
4.9
8
90
0
51
51
12
0
35
1.40
31562375--31562416
12
3.5
12
86
0
57
50
11
0
38
1.40
31578889--31578935
21
2.3
20
78
7
51
27
8
4
59
1.45
31581462--31581491
2
15.0
2
100
0
60
50
0
0
50
1.00
31582934--31582966
2
16.5
2
100
0
66
0
48
0
51
1.00
31582966--31582991
2
13.0
2
100
0
52
50
0
0
50
1.00
31584299--31584358
28
2.3
26
86
13
79
56
1
0
41
1.09
31584299--31584368
26
2.6
26
78
13
63
55
2
1
40
1.23
31599838--31599879
22
1.9
22
90
0
66
35
11
9
42
1.74
31600018--31600070
24
2.2
24
86
6
72
24
18
3
52
1.62
31610331--31610404
24
2.9
26
74
13
73
47
2
1
48
1.24
31612264--31612307
21
2.1
21
95
0
79
22
29
20
27
1.99
31625179--31625208
15
2.0
15
100
0
60
33
6
13
46
1.69
31636342--31636399
20
3.1
19
74
16
59
50
0
0
50
1.00
31636341--31636399
19
3.2
18
75
17
59
50
0
0
49
1.00
31639768--31639886
44
2.6
44
81
4
139
39
5
42
12
1.67
31646521--31646575
25
2.2
25
93
3
94
21
21
12
43
1.86
31651226--31651296
21
3.4
21
74
11
65
49
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31651235--31651302
11
6.2
11
70
17
52
51
0
0
48
1.00
31651235--31651296
27
2.3
27
83
8
81
50
0
0
50
1.00
31651227--31651313
21
3.9
21
66
22
52
50
0
0
49
1.00
31652854--31652898
19
2.3
19
80
3
54
55
0
6
37
1.26
31655999--31656071
36
2.0
36
94
0
128
36
10
13
38
1.80
31660434--31660472
15
2.5
15
87
4
51
2
20
2
74
1.06
31661109--31661140
2
17.0
2
87
12
50
50
0
0
50
1.00
31661109--31661133
13
1.9
13
100
0
50
52
0
0
48
1.00
31661109--31661140
15
2.1
15
94
0
55
50
0
0
50
1.00
31663983--31664035
20
2.7
19
82
5
52
45
1
1
50
1.23
31674886--31674928
2
22.0
2
85
4
61
48
0
0
51
1.00
31677807--31678149
172
2.0
172
98
0
659
41
12
21
25
1.88
31698982--31699010
2
14.5
2
100
0
58
51
0
0
48
1.00
31704713--31704754
22
1.9
22
85
0
57
45
0
0
54
0.99
31707488--31707530
17
2.5
17
81
7
52
60
0
0
39
0.97
31709099--31709133
17
2.0
17
88
5
52
62
2
0
34
1.10
31724949--31724978
12
2.5
12
100
0
60
43
6
0
50
1.28
31726304--31726359
29
1.9
29
82
7
69
39
7
0
53
1.28
31727204--31727236
16
2.0
17
94
5
59
45
0
6
48
1.27
31727294--31727346
20
2.5
22
84
9
65
43
0
1
54
1.11
31729878--31729911
6
5.7
6
92
0
50
50
44
0
5
1.26
31737685--31737718
17
2.0
17
100
0
68
64
0
11
23
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31740408--31740441
2
17.0
2
93
0
59
47
0
2
50
1.16
31741381--31741411
3
10.3
3
100
0
62
32
0
0
67
0.91
31747844--31747901
29
1.9
31
86
6
84
60
0
1
37
1.07
31747853--31747928
15
5.4
14
74
16
68
56
1
1
40
1.16
31747846--31747912
15
4.4
15
79
7
73
58
1
1
38
1.17
31755665--31755810
69
2.1
69
88
0
211
28
28
15
27
1.96
31785369--31785532
84
2.0
84
87
2
240
40
9
11
37
1.75
31788095--31788236
71
2.0
71
100
0
284
32
19
18
29
1.96
31789004--31789039
8
4.5
8
92
0
63
13
0
0
86
0.58
31789119--31789342
41
5.4
41
78
6
157
45
16
10
28
1.79
31789199--31789348
41
3.7
41
79
7
178
44
18
8
28
1.79
31789117--31789344
82
2.7
82
82
6
262
45
16
10
28
1.79
31790381--31790424
7
5.9
7
87
12
61
13
0
0
86
0.57
31790381--31790426
23
2.0
23
95
0
83
15
0
0
84
0.62
31790379--31790424
16
3.0
15
90
6
74
15
0
0
84
0.62
31801330--31801358
15
1.9
15
100
0
58
20
0
3
75
0.94
31801539--31801576
20
1.9
20
84
10
51
15
2
2
78
0.97
31801892--31801927
17
2.1
18
94
5
65
0
33
0
66
0.92
31803516--31804378
239
3.7
235
80
8
807
31
8
12
46
1.72
31807106--31807139
14
2.4
14
90
5
50
0
20
5
73
1.04
31813591--31813631
17
2.4
17
83
0
55
68
9
0
21
1.18
31814056--31814121
30
2.2
31
86
2
89
57
21
3
18
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31814088--31814132
19
2.4
19
85
7
56
53
15
6
24
1.66
31815423--31815898
199
2.4
200
81
3
573
33
11
11
43
1.77
31816162--31816210
20
2.4
21
75
3
55
44
0
0
55
0.99
31832868--31832893
10
2.6
10
100
0
52
38
11
11
38
1.78
31846857--31847495
319
2.0
319
88
2
944
28
11
18
41
1.85
31853524--31853590
35
1.9
35
100
0
134
47
8
14
28
1.75
31877438--31877496
27
2.2
27
96
0
109
23
22
18
35
1.96
31884363--31884400
17
2.2
18
85
4
51
52
0
2
44
1.14
31890727--31890751
4
6.2
4
100
0
50
76
0
0
24
0.80
31891381--31891463
30
2.8
29
87
7
112
60
0
2
37
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195