genome.fa.s112.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  81  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15444812--15448210	891	3.8	892	85	4	4410	25	23	24	25	2.00
15447318--15447368	26	2.0	26	96	0	93	29	13	27	29	1.94
15449047--15449099	26	2.0	26	88	0	79	32	20	22	24	1.98
15449951--15450001	26	2.0	26	96	0	93	29	19	23	27	1.98
15451758--15451809	26	2.0	26	85	3	70	28	23	23	25	1.99
15454453--15454505	26	2.0	26	96	0	97	26	18	26	28	1.98
15455338--15455390	26	2.0	26	92	0	88	24	22	26	26	2.00
15448209--15457222	885	10.0	899	86	2	11601	25	24	24	25	2.00
15459935--15459987	26	2.0	26	96	0	97	28	18	26	26	1.98
15463055--15463104	26	1.9	26	91	0	82	28	16	24	32	1.96
15461624--15465753	878	4.7	876	84	5	5136	25	23	24	26	2.00
15464828--15464880	26	2.0	26	88	0	79	26	22	24	26	2.00
15465727--15465779	26	2.0	26	88	0	79	28	18	22	30	1.98
15465753--15469708	877	4.5	876	81	8	4522	25	23	25	26	2.00
15472665--15472737	6	12.3	6	72	13	53	79	1	5	13	0.97
15472662--15472808	22	6.5	22	66	12	64	74	3	4	17	1.14
15472668--15472729	10	6.2	10	73	14	56	80	1	4	12	0.94
15472760--15472785	4	6.5	4	100	0	52	76	0	0	23	0.78
15473149--15473188	20	2.0	20	95	0	71	10	15	32	42	1.79
15473771--15473848	27	2.9	27	79	11	79	71	3	0	24	1.02
15474397--15474449	26	2.0	26	96	0	97	26	22	24	26	2.00
15476905--15476957	26	2.0	26	89	7	81	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15474423--15477871	892	3.9	892	86	4	4603	25	24	24	25	2.00
15477809--15477861	26	2.0	26	100	0	106	26	20	26	26	1.99
15478545--15478597	26	2.0	26	89	7	81	28	20	24	26	1.99
15480321--15480373	26	2.0	26	92	0	88	26	16	26	30	1.97
15477835--15490775	904	14.5	901	87	3	17093	25	24	24	25	2.00
15492328--15492380	26	2.0	26	100	0	106	26	20	26	26	1.99
15493214--15493265	26	2.0	26	88	0	77	26	19	21	32	1.97
15493649--15493698	26	1.9	26	88	8	75	32	20	24	24	1.98
15492889--15493756	434	2.0	436	89	2	1334	27	27	24	20	1.99
15494510--15494562	26	2.0	26	88	0	79	28	22	22	26	1.99
15493323--15496020	877	3.1	866	81	9	2924	25	24	24	25	2.00
15497866--15497918	26	2.0	26	96	0	97	26	22	26	24	2.00
15498756--15498808	26	2.0	26	92	0	88	28	16	24	30	1.97
15496817--15501480	905	5.2	900	85	4	6023	25	24	25	25	2.00
15502841--15503222	159	2.4	159	81	2	448	21	29	27	21	1.99
15503899--15503951	26	2.0	26	96	0	97	28	18	26	26	1.98
15503926--15504273	158	2.2	159	82	3	414	21	28	29	21	1.98
15504056--15505855	872	2.1	873	88	1	2651	24	24	24	26	2.00
15505829--15505881	26	2.0	26	96	0	97	28	20	24	26	1.99
15506572--15506627	26	2.2	26	93	0	94	30	19	21	28	1.98
15507476--15507531	26	2.2	26	100	0	112	30	19	21	28	1.98
15505855--15510464	904	5.1	903	87	2	6306	25	24	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15510521--15510573	26	2.0	26	92	0	88	26	20	26	26	1.99
15510143--15510815	356	1.9	355	88	1	1008	24	27	29	18	1.98
15511413--15511465	26	2.0	26	100	0	106	26	20	26	26	1.99
15512304--15512356	26	2.0	26	88	0	79	28	16	24	30	1.97
15510500--15514995	891	5.0	884	84	4	5458	25	24	24	25	2.00
15514086--15514137	26	2.0	26	84	0	68	28	17	23	30	1.97
15510499--15514889	883	4.9	898	84	3	5650	25	24	24	25	2.00
15516580--15516650	24	3.0	24	97	0	133	29	26	25	18	1.98
15517603--15517652	26	1.9	26	100	0	100	28	18	28	26	1.98
15517770--15519581	733	2.5	727	82	5	2096	25	22	23	28	1.99
15519918--15519970	26	2.0	26	92	0	88	26	16	28	28	1.97
15520813--15520865	26	2.0	26	88	0	79	28	16	26	28	1.97
15519581--15523636	899	4.5	896	85	3	5413	25	23	24	25	2.00
15521706--15521758	26	2.0	26	96	0	97	26	20	24	28	1.99
15523504--15523556	26	2.0	26	88	0	79	30	18	22	28	1.98
15523868--15523920	26	2.0	26	96	0	97	26	18	26	28	1.98
15523270--15523942	365	1.8	366	90	1	1073	25	29	26	18	1.98
15524407--15524459	26	2.0	26	92	7	90	26	16	26	30	1.97
15524844--15524896	26	2.0	26	100	0	106	26	20	26	26	1.99
15525857--15525926	26	2.7	26	90	0	113	31	20	21	27	1.98
15526776--15526828	26	2.0	26	88	0	79	26	15	28	30	1.96
15527671--15527720	26	1.9	26	95	0	91	28	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15525874--15528837	903	3.3	898	84	5	3878	25	24	25	24	2.00
15528574--15528626	26	2.0	26	96	0	97	28	20	26	24	1.99
15533792--15533842	26	2.0	26	96	0	93	29	15	21	33	1.94
15534694--15534746	26	2.0	26	88	0	79	30	24	16	28	1.97
15530239--15547062	900	18.8	901	85	3	21238	25	25	24	25	2.00
15536494--15536546	26	2.0	26	92	0	88	26	22	20	30	1.98
15537405--15537456	26	2.0	26	96	0	95	26	25	19	28	1.98
15538304--15538356	26	2.0	26	81	0	61	32	20	18	28	1.97
15541840--15541892	26	2.0	26	96	0	97	26	24	20	28	1.99
15542745--15542797	26	2.0	26	100	0	106	26	26	20	26	1.99
15544543--15544595	26	2.0	26	96	0	97	24	26	20	28	1.99
15545457--15545506	26	1.9	26	95	0	91	28	26	18	28	1.98
15546354--15546406	26	2.0	26	92	0	88	30	26	16	26	1.97
15540965--15547062	901	6.8	897	86	3	7998	25	25	24	25	2.00
15546794--15547331	269	2.0	269	91	0	862	32	25	18	23	1.97
15547518--15547570	26	2.0	26	88	0	79	30	28	15	26	1.96
15547880--15547935	26	2.2	26	93	0	94	28	21	19	30	1.98
15548782--15548834	26	2.0	26	96	0	97	26	24	20	28	1.99
15549680--15549732	26	2.0	26	100	0	106	26	26	20	26	1.99
15547809--15551857	897	4.5	896	85	3	5233	25	24	23	26	2.00
15552339--15553796	737	2.0	737	86	3	2068	27	23	22	26	1.99
15553789--15553838	26	1.9	26	100	0	100	26	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15554787--15554857	24	3.0	24	97	0	133	18	25	26	29	1.98
15555336--15555388	26	2.0	26	96	0	97	28	26	18	26	1.98
15557301--15557353	26	2.0	26	88	0	79	28	22	20	28	1.99
15558206--15558258	26	2.0	26	92	0	88	26	22	22	28	1.99
15559104--15559159	26	2.2	26	93	0	94	28	21	19	30	1.98
15556443--15559876	901	3.8	901	87	3	4725	25	24	23	25	2.00
15559850--15559902	26	2.0	26	96	0	97	26	24	20	28	1.99
15561738--15561790	26	2.0	26	96	0	97	26	26	18	28	1.98
15562462--15562818	159	2.3	158	81	2	394	21	27	27	22	1.99
15564203--15569431	900	5.8	899	84	5	6325	25	24	23	25	2.00
15566876--15566926	24	2.1	25	85	3	68	31	19	15	33	1.93
15566177--15567886	925	1.8	926	87	2	2576	26	24	22	25	2.00
15567795--15567845	26	2.0	25	85	11	68	27	21	19	31	1.97
15570006--15570079	27	2.7	27	83	12	80	25	0	4	70	1.05
15570017--15570093	31	2.5	30	81	10	84	24	1	2	71	1.06
15570015--15570093	28	2.8	28	80	16	81	25	1	2	70	1.07
15570015--15570117	31	3.3	31	77	16	81	26	1	3	67	1.18
15571088--15571142	14	3.4	16	80	14	69	10	5	1	81	0.92
15571062--15571139	22	3.6	22	78	13	63	14	6	1	78	1.01
15571076--15571142	17	4.1	16	73	9	64	11	5	1	80	0.95
15571088--15571157	17	4.3	15	77	17	61	11	7	2	78	1.05
15577189--15577250	20	3.0	21	77	20	67	70	0	19	9	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15577199--15577236	18	2.1	19	85	9	53	76	0	15	7	1.01
15578447--15578660	41	5.1	41	92	1	329	23	17	24	34	1.96
15578667--15578712	1	46.0	1	82	0	56	91	8	0	0	0.43
15578921--15578972	27	1.9	27	88	7	79	26	0	3	69	1.06
15578932--15579016	35	2.4	35	83	12	104	23	3	2	70	1.14
15578923--15579023	39	2.7	38	76	17	95	23	2	3	69	1.19
15579599--15579637	20	2.0	20	89	0	60	43	25	15	15	1.86
15580032--15580119	17	5.4	16	74	17	65	17	2	1	79	0.90
15580045--15580116	6	12.3	6	73	16	62	13	2	1	81	0.86
15580043--15580116	28	2.8	25	77	20	80	13	2	1	82	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195