genome.fa.s112.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  16  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3661501--3661558	31	1.9	30	89	3	89	56	1	3	37	1.26
3661512--3661572	26	2.3	27	78	18	74	59	1	3	36	1.24
3661899--3661943	22	2.1	22	87	4	65	68	0	0	31	0.89
3661899--3661942	7	6.3	7	79	10	54	68	0	0	31	0.90
3661997--3662031	18	1.9	18	94	0	61	40	2	11	45	1.55
3663741--3663768	14	2.0	14	100	0	56	0	7	0	92	0.37
3665447--3665489	19	2.3	19	84	8	52	41	0	0	58	0.98
3665507--3665540	18	1.9	17	88	5	50	32	2	20	44	1.67
3666901--3666942	15	2.9	15	80	16	52	71	0	14	14	1.15
3679160--3679200	21	2.0	20	85	4	55	36	36	21	4	1.75
3680802--3680828	14	1.9	14	100	0	54	7	7	7	77	1.12
3684963--3685001	14	2.9	14	92	3	62	35	0	2	61	1.10
3684973--3685296	120	2.7	116	84	7	409	37	10	4	48	1.58
3684982--3685296	59	5.3	59	79	10	338	36	10	4	48	1.59
3685915--3685946	12	2.7	12	95	0	55	53	9	0	37	1.34
3686273--3686337	5	11.8	5	81	15	51	73	1	1	23	1.00
3688044--3688089	24	1.9	24	86	0	65	82	0	8	8	0.84
3688278--3688518	59	4.1	58	78	13	258	36	9	4	48	1.56
3688301--3688518	120	1.8	120	86	4	314	36	10	3	49	1.55
3688446--3688492	17	2.8	17	84	9	62	48	0	2	48	1.13
3688591--3688641	18	2.8	18	73	26	54	70	5	0	23	1.09
3689385--3689454	6	11.5	6	73	14	63	78	4	0	17	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3689890--3689949	31	1.9	31	86	6	86	40	15	20	25	1.90
3690318--3690400	18	4.8	17	73	15	71	75	4	1	18	1.04
3690318--3690399	6	13.0	6	72	16	60	75	4	1	18	1.04
3690654--3690699	2	24.0	2	81	16	53	2	43	0	54	1.12
3688806--3691237	924	2.6	945	85	3	3144	32	17	14	35	1.90
3690929--3690991	33	2.0	32	84	6	83	42	15	0	41	1.47
3691093--3691379	141	2.0	141	95	0	511	34	17	15	33	1.91
3691442--3691485	16	2.8	16	80	13	54	77	6	2	13	1.07
3691418--3691491	6	12.0	6	75	11	51	74	4	1	20	1.06
3691436--3691492	22	2.7	21	82	12	64	77	5	1	15	1.03
3691418--3691499	42	1.9	43	82	7	105	71	7	2	18	1.20
3694518--3694560	2	21.5	2	100	0	86	48	0	51	0	1.00
3699440--3699481	20	2.2	20	86	4	59	47	0	0	52	1.00
3699927--3699951	11	2.3	11	100	0	50	0	8	0	92	0.40
3705340--3705408	34	2.0	34	100	0	138	26	13	8	52	1.69
3711027--3711070	19	2.2	20	88	11	65	40	0	0	59	0.98
3711079--3711118	21	2.0	20	90	5	62	50	2	0	47	1.14
3718867--3718911	2	24.0	2	86	13	69	53	0	0	46	1.00
3719225--3719268	22	2.0	23	86	4	63	29	6	0	63	1.20
3724191--3724254	24	2.6	25	90	5	103	64	9	3	23	1.38
3726184--3726811	241	2.6	241	86	2	897	40	10	9	38	1.74
3726184--3726811	242	2.6	236	84	5	830	40	10	9	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3727042--3727086	24	1.9	23	82	13	56	35	6	6	51	1.55
3728749--3728793	23	2.0	23	86	0	63	46	0	2	51	1.13
3729409--3729464	24	2.3	24	81	9	60	64	1	8	25	1.32
3730664--3730712	16	2.8	18	82	14	59	59	0	0	40	0.98
3730686--3730735	16	3.0	16	79	5	55	62	0	0	38	0.96
3730651--3730723	17	4.3	17	76	10	60	57	0	0	42	0.98
3735249--3735298	23	2.2	23	82	13	59	54	2	0	44	1.11
3751657--3751702	19	2.3	20	85	3	67	52	4	2	41	1.33
3751657--3751709	20	2.7	19	82	5	52	54	3	1	39	1.29
3751829--3751887	25	2.4	25	82	0	73	32	1	0	66	1.02
3751879--3751925	20	2.3	20	92	0	76	36	2	6	55	1.37
3751912--3751973	16	3.9	16	86	0	88	32	1	1	64	1.13
3751929--3751972	8	5.5	8	81	10	54	34	2	0	63	1.07
3754907--3754950	17	2.5	18	85	3	54	38	0	2	59	1.10
3754996--3755039	17	2.6	17	86	10	56	36	0	2	61	1.09
3755006--3755080	28	2.6	28	80	12	82	34	0	4	61	1.15
3758148--3758339	75	2.6	74	81	5	215	42	6	8	41	1.62
3769190--3769239	26	1.9	26	100	0	100	28	8	8	56	1.57
3770847--3770913	32	2.1	33	81	13	77	53	0	1	44	1.09
3772401--3772439	18	2.0	20	90	9	64	51	0	0	48	1.00
3772398--3772444	20	2.4	20	76	13	53	53	0	0	46	1.00
3775265--3775328	32	2.0	32	93	0	110	62	7	4	25	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3780397--3780435	18	2.2	18	100	0	78	53	12	28	5	1.60
3785489--3785539	22	2.4	22	83	3	68	27	1	9	60	1.39
3787670--3787723	27	2.0	28	85	10	76	42	11	5	40	1.64
3794188--3794240	2	26.5	2	100	0	106	0	49	0	50	1.00
3796168--3796224	22	2.6	22	83	10	64	24	0	24	50	1.49
3797931--3797963	14	2.4	14	85	5	50	0	0	12	87	0.53
3797931--3797963	13	2.5	13	86	13	50	0	0	12	87	0.53
3798226--3798325	37	2.7	37	80	6	121	49	21	21	9	1.76
3798215--3798360	74	2.0	73	86	4	204	45	19	23	10	1.82
3798238--3798360	37	3.4	37	75	9	110	46	19	22	11	1.82
3798373--3798415	22	2.0	22	90	0	68	27	9	25	37	1.87
3798502--3798572	22	3.2	22	81	2	79	38	16	18	26	1.92
3798389--3798653	131	2.0	131	79	5	286	39	16	18	25	1.92
3798545--3798726	87	2.1	87	82	6	217	41	18	16	24	1.90
3798739--3798993	88	2.9	88	85	1	305	43	14	18	22	1.87
3798741--3799026	88	3.2	88	80	2	299	42	15	18	23	1.89
3799005--3799058	22	2.5	21	85	8	72	35	16	20	27	1.94
3799745--3799774	15	2.0	15	93	0	51	36	13	30	20	1.90
3799713--3799809	41	2.4	41	87	3	133	30	16	25	26	1.97
3800739--3800767	5	6.0	5	92	8	51	0	17	0	82	0.66
3800739--3800767	14	2.0	15	93	6	51	0	17	0	82	0.66
3804740--3804773	17	2.0	17	94	0	59	38	5	32	23	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3805881--3805952	38	1.9	37	86	8	101	30	8	22	38	1.83
3806065--3806104	19	2.1	20	90	9	66	32	5	2	60	1.32
3807944--3808013	22	3.2	22	76	10	63	18	2	25	52	1.59
3808066--3808103	16	2.4	16	86	0	58	28	2	15	52	1.56
3808386--3808419	13	2.7	13	90	4	52	29	0	0	70	0.87
3810034--3810073	21	2.0	20	85	5	53	50	5	0	45	1.23
3810644--3810672	2	14.5	2	100	0	58	0	51	0	48	1.00
3822495--3822579	42	2.0	42	97	0	161	50	15	5	28	1.67
3833706--3833829	62	2.0	62	83	10	155	37	7	10	44	1.67
3833969--3834091	65	1.9	66	81	1	149	47	9	8	34	1.66
3834712--3834764	26	2.0	26	100	0	106	54	7	3	33	1.46
3835552--3835668	58	2.0	58	93	0	198	50	14	13	21	1.77
3840472--3840501	10	3.1	10	95	4	53	36	0	0	63	0.95
3845225--3845258	16	2.1	16	89	10	52	32	5	0	61	1.20
3846400--3846447	17	3.1	14	78	18	51	62	4	0	33	1.14
3855124--3855163	21	1.9	21	89	0	62	37	17	20	25	1.94
3855774--3855817	2	22.0	2	100	0	88	50	0	50	0	1.00
3864040--3864085	18	2.5	17	83	13	56	47	6	2	43	1.41
3864040--3864092	19	2.8	19	83	11	65	49	5	1	43	1.37
3864189--3864218	15	2.0	15	93	0	51	36	3	0	60	1.14
3865475--3865506	16	2.0	16	93	0	55	37	0	3	59	1.13
3869931--3870000	29	2.4	30	80	4	88	44	1	0	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3871102--3871132	14	2.2	14	94	0	53	58	3	0	38	1.15
3871475--3871506	2	16.5	2	93	6	57	0	50	0	50	1.00
3871506--3871535	2	15.0	2	92	0	51	46	0	3	50	1.18
3873975--3874152	89	2.0	89	96	0	329	35	19	18	26	1.94
3880360--3880415	24	2.3	24	87	0	76	33	1	39	25	1.66
3899877--3899912	9	3.9	9	92	3	54	27	0	2	69	1.02
3902332--3902374	21	2.0	21	82	13	52	60	4	0	34	1.17
3902977--3903052	16	4.8	15	76	10	71	34	0	2	63	1.09
3902972--3903108	66	2.1	65	80	13	147	34	0	5	59	1.21
3902971--3903052	32	2.5	32	74	2	83	35	0	2	62	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195