genome.fa.s112.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  52  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10863183--10863229	19	2.5	20	90	10	73	38	0	4	57	1.18
10863658--10863706	8	6.1	8	80	0	53	14	6	2	77	1.05
10864813--10864851	17	2.2	18	86	13	55	48	2	0	48	1.15
10865798--10865835	20	1.9	20	89	10	60	36	5	0	57	1.21
10866123--10866157	14	2.4	15	90	4	54	65	14	2	17	1.38
10867865--10867900	18	2.0	18	94	0	63	22	13	22	41	1.89
10868797--10868826	12	2.6	11	90	10	51	56	6	0	36	1.26
10868800--10868825	12	2.2	12	100	0	52	61	7	0	30	1.24
10869372--10869399	2	14.0	2	100	0	56	50	0	0	50	1.00
10872741--10873124	192	2.0	192	91	1	626	34	20	15	29	1.93
10874498--10874528	15	2.1	15	93	0	53	90	0	9	0	0.46
10876113--10876158	18	2.5	19	79	10	60	34	4	0	60	1.16
10876644--10876679	16	2.3	15	90	4	54	63	0	0	36	0.94
10876844--10876930	23	3.8	22	74	18	79	52	6	4	35	1.49
10876812--10876918	46	2.3	46	78	12	114	55	5	5	33	1.47
10882193--10882894	353	2.0	352	93	0	1208	27	16	19	36	1.93
10894481--10894524	21	2.0	22	82	4	54	0	27	0	72	0.85
10894760--10894799	20	1.9	19	85	14	53	55	12	2	30	1.50
10895075--10895099	13	1.9	13	100	0	50	20	0	0	80	0.72
10895308--10895718	128	3.3	126	80	10	482	45	18	11	25	1.82
10895303--10895793	39	11.9	40	81	7	441	43	18	12	25	1.84
10895303--10895757	84	5.5	84	79	9	475	44	18	11	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10895284--10895799	204	2.5	208	81	10	529	44	18	11	25	1.83
10896194--10896254	21	2.9	21	87	2	86	42	11	4	40	1.62
10897530--10897571	13	3.3	12	84	12	57	9	7	0	83	0.81
10898513--10898704	94	2.0	94	97	0	366	34	20	8	36	1.84
10900134--10900179	18	2.6	18	89	0	74	36	19	17	26	1.94
10902166--10902220	23	2.4	22	82	11	58	74	5	3	16	1.15
10906054--10906127	38	2.0	37	89	2	112	43	4	5	47	1.45
10908746--10909196	225	2.0	225	93	0	776	31	12	17	37	1.88
10911505--10911662	80	2.0	82	94	2	284	26	15	16	41	1.88
10914682--10914723	18	2.3	18	87	0	57	33	0	2	64	1.07
10922897--10922960	27	2.4	27	81	0	83	37	35	6	20	1.78
10925909--10925952	22	2.0	22	86	0	61	45	11	9	34	1.72
10928821--10928849	14	2.1	14	93	6	51	0	20	0	79	0.74
10934493--10934519	2	13.5	2	100	0	54	51	0	48	0	1.00
10935634--10935688	3	18.3	3	100	0	110	32	0	0	67	0.91
10936106--10936162	21	2.8	21	82	12	57	35	8	28	28	1.87
10936485--10936537	6	9.0	6	74	25	51	16	0	1	81	0.79
10936483--10936536	10	5.3	10	76	10	56	14	0	1	83	0.73
10936483--10936536	24	2.2	25	90	3	83	14	0	1	83	0.73
10936748--10936790	17	2.6	18	78	14	56	60	11	0	27	1.31
10944223--10944273	25	2.1	25	85	10	70	27	9	17	45	1.80
10949552--10949605	25	2.2	25	93	0	90	46	18	3	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10950092--10950146	25	2.2	23	79	17	65	45	12	5	36	1.66
10950589--10950706	61	1.9	61	84	5	157	38	13	5	43	1.66
10951119--10951182	19	3.4	19	75	12	78	48	0	9	42	1.35
10951115--10951188	37	2.0	37	100	0	148	45	0	10	43	1.39
10951371--10951422	25	2.1	25	82	7	61	50	1	0	48	1.12
10955438--10955470	2	16.5	2	100	0	66	51	0	0	48	1.00
10956429--10956471	13	3.3	13	86	0	59	32	2	0	65	1.06
10957280--10957338	5	11.8	5	78	10	50	74	3	0	22	0.96
10957300--10957341	21	2.0	21	86	9	59	78	4	0	16	0.91
10957273--10957337	30	2.1	31	82	2	78	73	3	0	23	0.97
10957990--10958030	20	2.1	19	86	4	55	82	9	0	7	0.83
10963735--10963793	24	2.5	24	83	8	75	42	1	6	49	1.39
10978553--10978618	22	3.0	23	77	16	70	21	15	22	40	1.90
10981035--10981071	15	2.4	16	82	17	51	29	0	0	70	0.88
10983328--10983361	7	5.0	7	85	7	52	11	17	0	70	1.16
10984998--10985197	110	1.8	110	87	0	301	37	12	18	32	1.88
10990744--10990785	21	2.0	21	95	0	75	28	21	14	35	1.92
10993416--10993624	109	1.9	110	86	1	294	39	13	16	29	1.88
10996003--10996042	15	2.7	15	88	0	62	67	10	0	22	1.20
10995996--10996042	21	2.2	20	79	17	51	65	10	0	23	1.23
10996676--10996916	129	1.9	129	89	1	376	34	9	6	49	1.61
10997014--10997067	9	6.1	9	77	18	60	77	1	1	18	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10997006--10997067	20	3.4	18	80	10	72	79	1	1	17	0.90
10997014--10997067	26	2.0	27	86	10	76	77	1	1	18	0.95
10998672--10998704	16	2.1	17	88	11	52	18	15	6	60	1.54
11000024--11000054	16	1.9	16	93	0	53	38	16	0	45	1.47
11001289--11001340	14	3.5	15	75	17	54	51	1	0	46	1.12
11001289--11001358	35	2.0	36	83	8	90	51	4	0	44	1.21
11004058--11004102	2	22.5	2	90	0	72	0	46	2	51	1.13
11011741--11011785	23	2.0	22	84	16	58	40	22	6	31	1.80
11013504--11013562	25	2.4	24	82	2	64	49	1	0	49	1.11
11014010--11014042	10	3.3	10	91	8	50	42	0	3	54	1.15
11014067--11014106	22	1.9	20	85	10	53	42	7	0	50	1.30
11014166--11014214	21	2.3	21	85	0	62	42	8	0	48	1.32
11015023--11015078	26	2.2	26	80	6	60	44	0	5	50	1.25
11015712--11015750	15	2.6	15	84	12	53	23	5	0	71	1.05
11021410--11021435	12	2.2	12	100	0	52	38	0	0	61	0.96
11022762--11022816	10	5.5	10	76	8	58	29	7	18	45	1.76
11022733--11022820	30	3.0	29	86	6	115	28	12	15	43	1.84
11028723--11028768	25	1.9	24	82	8	58	19	21	8	50	1.75
11029829--11029872	22	2.0	22	86	8	63	31	4	11	52	1.57
11029945--11029998	17	3.2	17	75	12	58	25	11	3	59	1.48
11031331--11031469	69	2.0	69	87	2	199	39	4	15	40	1.67
11033052--11033097	18	2.7	17	80	12	51	54	0	4	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11033900--11033931	2	16.0	2	100	0	64	50	0	0	50	1.00
11035926--11035961	12	2.8	13	83	8	56	8	25	22	44	1.80
11042255--11042296	20	2.0	21	86	13	61	54	0	4	40	1.21
11042313--11042341	14	2.0	15	93	6	51	44	0	0	55	0.99
11042392--11042440	18	2.8	18	76	14	57	48	0	2	48	1.12
11042402--11042440	18	2.2	18	90	0	60	53	0	2	43	1.14
11042738--11042870	67	2.0	67	93	0	230	39	9	9	41	1.70
11046523--11046597	14	5.6	14	75	19	61	46	0	5	48	1.25
11048534--11048656	32	3.9	30	80	10	138	38	0	7	53	1.34
11051307--11051472	62	2.6	62	81	3	172	37	13	11	37	1.81
11051497--11051592	50	1.9	50	83	8	124	35	15	11	37	1.84
11051695--11052395	363	2.0	358	79	6	783	35	8	13	42	1.75
11060329--11060386	2	29.0	2	100	0	116	50	0	50	0	1.00
11060710--11060770	23	2.7	23	79	7	70	24	3	4	67	1.26
11060727--11060771	22	2.0	23	86	4	65	24	4	4	66	1.29
11064583--11064617	10	3.4	10	88	7	52	85	0	5	8	0.73
11071744--11071797	22	2.4	23	81	12	67	38	0	5	55	1.23
11074325--11074515	38	4.8	39	77	12	174	21	10	18	48	1.78
11074328--11074541	40	5.3	39	75	11	166	21	10	19	49	1.78
11074724--11074783	23	2.7	23	82	15	72	16	1	5	76	1.04
11074829--11074923	22	4.1	22	75	15	68	23	5	3	68	1.24
11076562--11076615	9	6.0	9	79	16	67	77	0	9	12	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11076565--11076600	16	2.2	16	100	0	72	77	0	11	11	0.99
11076575--11076630	18	2.8	19	86	10	69	80	1	7	10	0.97
11076588--11076631	11	3.8	11	82	8	52	81	2	4	11	0.92
11078272--11078318	20	2.4	20	92	3	78	72	0	12	14	1.13
11078275--11078318	6	6.8	6	82	12	52	77	0	9	13	0.99
11078272--11078325	20	2.7	20	88	5	65	74	0	12	12	1.08
11078857--11078895	13	3.1	13	79	20	55	64	10	0	25	1.25
11078844--11078915	25	2.9	25	82	12	85	58	12	4	25	1.52
11078844--11078959	24	4.9	25	76	10	93	55	11	6	27	1.58
11078897--11078967	20	3.3	20	72	14	70	47	12	8	30	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195