genome.fa.s112.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  186  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32438924--32438996	26	2.8	26	78	14	71	35	4	1	58	1.25
32441102--32441150	23	2.1	23	100	0	98	38	24	10	26	1.87
32443194--32443227	9	3.7	9	92	4	50	55	0	0	44	0.99
32448170--32448652	242	2.0	241	97	0	903	24	19	18	37	1.94
32452154--32452203	24	2.0	26	84	7	68	54	4	16	26	1.59
32463839--32463987	75	2.0	75	88	2	219	24	28	11	34	1.90
32465296--32465344	18	2.7	18	81	6	55	0	22	4	73	1.00
32472423--32472470	25	1.9	25	91	0	78	20	10	25	43	1.83
32483260--32483454	99	2.0	99	91	0	318	28	24	26	20	1.99
32497665--32497734	33	2.2	33	97	2	133	30	7	18	44	1.76
32498151--32498204	22	2.3	23	87	9	83	50	0	0	50	1.00
32500433--32500486	25	2.1	25	83	10	65	59	0	0	40	0.98
32501351--32501382	2	16.0	2	100	0	64	0	50	0	50	1.00
32507901--32507946	22	2.0	23	83	4	58	60	0	2	36	1.09
32507938--32507970	12	2.5	13	85	14	50	51	0	0	48	1.00
32523509--32523931	211	2.0	211	99	0	837	35	19	18	27	1.95
32526003--32526046	20	2.2	20	84	8	54	40	2	0	56	1.11
32526055--32526100	24	2.0	23	87	8	67	52	6	0	41	1.27
32538684--32538771	42	2.1	41	93	4	151	36	9	19	35	1.83
32541644--32541671	2	14.0	2	100	0	56	50	0	0	50	1.00
32544699--32544738	20	2.0	21	85	5	55	35	7	0	57	1.27
32546396--32546519	46	2.7	46	83	0	167	56	15	4	23	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32564718--32564757	13	3.0	14	79	20	50	62	0	2	35	1.09
32564727--32564754	12	2.3	12	100	0	56	60	0	0	39	0.97
32564718--32564757	12	3.0	13	85	14	55	62	0	2	35	1.09
32564879--32564917	10	3.5	11	86	13	53	51	0	0	48	1.00
32565516--32565572	27	2.1	27	84	12	73	47	0	7	45	1.30
32569033--32569062	12	2.5	12	100	0	60	33	10	20	36	1.86
32570723--32570755	3	11.0	3	100	0	66	33	0	0	66	0.92
32571322--32571390	31	2.3	30	85	9	88	26	21	24	27	1.99
32571451--32571488	20	1.9	20	88	0	58	31	23	18	26	1.97
32571943--32572488	61	9.1	60	84	9	677	46	8	12	32	1.71
32571934--32572489	59	9.2	59	84	9	660	47	8	12	32	1.70
32575498--32575523	12	2.2	12	100	0	52	15	15	7	61	1.55
32606439--32606493	28	2.0	28	88	0	83	38	3	1	56	1.28
32625185--32625226	20	2.1	20	100	0	84	19	19	30	30	1.96
32626337--32626549	66	3.3	66	92	2	342	25	8	10	54	1.63
32629466--32629499	17	2.0	17	88	11	52	44	29	0	26	1.55
32630091--32630138	21	2.2	23	85	10	66	31	0	4	64	1.12
32631013--32631072	21	2.8	22	85	12	72	35	0	0	65	0.93
32631022--32631063	11	3.9	11	79	14	52	40	0	0	59	0.97
32631014--32631082	11	6.7	10	71	11	50	31	0	0	68	0.90
32631056--32631101	24	2.0	23	86	4	65	26	6	0	67	1.15
32635354--32635403	15	3.1	15	86	11	64	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32635360--32635404	17	2.8	16	87	12	65	42	0	0	57	0.98
32637087--32637134	23	2.1	22	88	3	69	35	4	6	54	1.45
32641565--32641608	24	1.9	24	86	9	65	61	2	6	29	1.34
32641606--32641632	14	1.9	14	100	0	54	37	0	3	59	1.15
32641657--32641698	11	3.6	12	81	12	52	40	0	0	59	0.97
32651385--32651452	34	2.0	34	88	0	100	22	22	13	42	1.87
32667264--32667316	22	2.3	23	83	3	72	39	0	13	47	1.43
32667341--32667485	52	2.8	52	82	3	168	44	4	19	31	1.71
32671411--32671450	16	2.5	16	79	0	53	47	0	0	52	1.00
32676914--32676946	15	2.1	17	88	11	52	39	0	9	51	1.34
32678327--32678360	11	3.1	11	82	0	50	11	5	2	79	1.02
32679093--32679202	57	1.9	57	83	3	141	52	0	27	19	1.52
32689181--32689295	54	2.1	54	88	0	167	29	20	26	24	1.99
32694631--32694693	21	2.8	22	78	11	65	14	3	4	77	1.05
32694658--32694700	19	2.3	18	88	4	59	11	2	4	81	0.93
32694904--32694941	20	1.9	20	84	10	51	15	0	7	76	1.01
32702964--32702991	1	28.0	1	100	0	56	0	0	0	100	0.00
32703983--32704016	17	2.1	17	88	5	52	32	0	0	67	0.91
32704274--32704321	22	2.2	23	85	7	64	35	2	0	62	1.07
32704666--32704724	30	2.0	30	83	6	75	66	5	0	28	1.13
32705667--32705707	21	1.9	22	85	5	57	24	7	2	65	1.30
32733806--32733859	27	2.0	28	85	3	74	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32738875--32738908	15	2.2	16	89	5	52	32	5	5	55	1.48
32740236--32740262	4	6.8	4	100	0	54	25	0	0	74	0.83
32741473--32741525	20	2.7	20	75	16	56	50	1	1	45	1.23
32742729--32742761	4	8.2	4	100	0	66	24	0	0	75	0.80
32764906--32764961	25	2.3	24	84	9	69	53	0	0	46	1.00
32771246--32771303	21	2.7	22	82	12	68	51	0	3	44	1.18
32772190--32772216	2	13.5	2	100	0	54	48	0	0	51	1.00
32774906--32774936	2	15.5	2	93	0	53	48	0	0	51	1.00
32780435--32780503	34	2.0	34	91	0	111	49	21	14	14	1.79
32782963--32783008	17	2.7	17	78	18	51	69	0	10	19	1.17
32790850--32790889	12	3.3	12	85	0	53	85	2	2	10	0.80
32791074--32791113	11	3.5	11	83	6	53	82	2	2	12	0.87
32794426--32794454	15	1.9	15	100	0	58	44	13	13	27	1.82
32800764--32800809	6	8.0	6	80	9	60	47	17	0	34	1.48
32802509--32802551	21	2.0	21	100	0	86	18	32	23	25	1.97
32809262--32809343	41	2.0	41	100	0	164	46	12	19	21	1.82
32814939--32814974	18	2.0	18	88	0	54	55	0	0	44	0.99
32814954--32814994	21	1.9	22	85	5	57	60	2	0	36	1.10
32824272--32824301	2	15.0	2	100	0	60	50	0	0	50	1.00
32828882--32828918	12	3.2	12	88	3	58	40	16	5	37	1.71
32840174--32840229	21	2.7	20	81	8	67	48	21	8	21	1.77
32840181--32840229	21	2.4	21	86	3	73	44	22	8	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32840803--32840890	21	4.2	20	76	12	72	59	10	6	23	1.54
32840814--32840952	21	6.7	21	70	9	70	57	13	5	23	1.58
32840909--32840970	20	3.0	20	75	11	63	54	17	4	22	1.61
32840814--32840965	42	3.7	41	75	9	146	56	14	5	23	1.60
32840908--32840995	41	2.1	41	80	0	104	53	17	6	22	1.67
32853155--32853242	20	4.4	20	71	13	67	59	4	0	36	1.18
32857738--32857782	16	2.9	16	87	6	58	60	6	0	33	1.23
32857740--32857787	14	3.2	14	80	13	51	58	8	0	33	1.28
32859538--32859573	13	2.6	14	91	8	56	0	16	5	77	0.94
32876117--32876151	2	17.5	2	100	0	70	48	0	51	0	1.00
32892744--32892790	25	1.9	24	95	4	85	72	10	8	8	1.29
32894195--32894301	52	2.1	52	94	3	189	48	3	9	38	1.53
32899546--32900183	317	2.0	318	98	0	1242	22	13	18	44	1.85
32904985--32905018	2	18.0	2	88	11	54	52	0	0	47	1.00
32905210--32905238	15	2.0	15	93	6	51	6	0	3	89	0.57
32915871--32915963	44	2.1	45	88	6	136	23	9	16	50	1.74
32920200--32920241	12	3.7	12	81	12	52	66	0	2	30	1.04
32921863--32921896	6	5.8	6	86	6	52	0	14	0	85	0.60
32921865--32921896	17	1.9	16	93	6	55	0	15	0	84	0.63
32927552--32927581	2	15.5	2	93	6	53	50	0	0	50	1.00
32928600--32928658	27	2.1	27	81	9	66	33	6	1	57	1.35
32938536--32938566	15	2.0	15	93	6	53	0	9	0	90	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32938540--32938571	13	2.5	13	94	0	55	0	9	3	87	0.64
32942635--32942731	36	2.6	37	91	3	160	18	13	34	34	1.90
32942782--32942870	43	2.0	44	89	2	135	37	16	11	34	1.85
32945816--32945906	41	2.2	41	80	7	96	48	5	3	42	1.42
32946393--32946427	15	2.4	14	86	9	52	34	0	0	65	0.93
32946672--32946704	17	1.9	17	93	0	57	36	9	0	54	1.32
32946951--32947007	20	2.8	20	78	0	78	24	12	15	47	1.80
32947470--32947522	26	2.0	27	88	3	81	35	5	1	56	1.34
32958396--32958690	113	2.6	113	80	5	337	45	11	11	31	1.76
32958448--32958695	114	2.2	114	81	6	299	45	11	12	31	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195