Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  55  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11463558--11463624
17
3.9
17
73
15
57
17
2
5
73
1.17
11463544--11463611
5
13.0
5
71
20
50
19
1
4
75
1.06
11463707--11463764
17
3.3
17
77
15
64
56
12
0
31
1.35
11463702--11463749
19
2.5
19
90
6
71
58
12
0
29
1.35
11472705--11472756
25
2.0
27
85
7
72
23
0
5
71
1.07
11472729--11472861
11
12.6
10
69
23
62
31
0
3
64
1.14
11472708--11472853
77
2.0
74
81
11
174
29
0
4
65
1.16
11472731--11472861
36
3.7
36
77
6
117
32
0
3
64
1.14
11472794--11472861
34
2.0
33
83
13
86
35
0
1
63
1.04
11472796--11472863
26
2.8
25
85
10
88
35
0
1
63
1.04
11472843--11472936
43
2.2
42
82
5
107
22
3
4
70
1.19
11472869--11472952
43
2.0
43
81
9
100
17
5
7
69
1.33
11472923--11472977
25
2.3
23
81
12
58
14
5
7
72
1.24
11485771--11485837
8
8.0
8
87
12
91
74
0
11
13
1.07
11485773--11485847
8
8.8
8
81
11
60
78
0
10
10
0.96
11485780--11485847
9
7.7
9
88
6
95
77
0
11
10
0.98
11486863--11486976
52
2.3
50
85
8
151
26
18
16
38
1.92
11486880--11486980
52
1.9
53
91
2
168
25
17
17
38
1.92
11487140--11487278
39
3.2
41
78
16
149
23
21
22
32
1.98
11486933--11487357
42
9.8
43
73
16
224
22
19
22
34
1.96
11487364--11487435
12
5.6
12
75
14
63
83
8
1
6
0.87
11487367--11487435
16
4.4
15
76
18
61
84
8
1
5
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11487367--11487435
10
6.6
10
73
14
50
84
8
1
5
0.84
11487583--11487615
8
4.1
8
85
14
50
12
0
0
87
0.53
11487583--11487615
15
2.1
16
94
5
59
12
0
0
87
0.53
11487582--11487629
20
2.3
21
82
7
62
18
2
0
79
0.84
11487656--11487757
4
25.8
4
70
26
58
25
0
0
72
0.97
11487700--11487755
6
9.2
6
78
18
62
16
0
1
82
0.76
11487710--11487751
7
5.4
8
88
8
52
14
0
2
83
0.75
11487656--11487796
14
9.5
14
70
24
76
26
2
1
70
1.07
11488394--11488434
3
12.7
3
90
10
55
63
0
36
0
0.95
11488691--11488828
15
8.6
15
70
12
78
18
3
3
74
1.11
11488692--11488849
15
9.9
14
72
19
73
17
4
3
74
1.14
11488689--11488732
19
2.4
18
85
14
63
11
0
4
84
0.77
11488763--11488850
26
3.4
25
78
7
86
15
6
1
76
1.06
11488763--11488850
5
16.8
5
75
13
70
15
6
1
76
1.06
11488856--11489274
59
6.9
59
81
8
461
46
6
13
33
1.68
11497758--11498143
48
8.0
49
79
10
386
27
10
20
41
1.85
11497765--11498225
143
3.2
141
78
13
425
27
11
19
40
1.86
11498102--11498356
44
5.8
44
83
5
284
30
16
16
36
1.91
11498101--11498348
88
2.8
88
85
3
333
30
16
15
37
1.90
11498116--11498374
132
2.0
131
83
3
333
30
16
15
37
1.90
11504682--11504707
2
13.0
2
100
0
52
50
0
0
50
1.00
11505513--11505537
13
1.9
13
100
0
50
80
0
0
20
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11507903--11507951
20
2.5
19
80
6
62
53
0
0
46
1.00
11509053--11509106
21
2.6
21
96
0
99
25
20
40
12
1.88
11511773--11511801
10
3.0
10
95
5
51
6
0
0
93
0.36
11513399--11513440
22
1.9
22
85
9
59
26
9
30
33
1.88
11513447--11513682
125
1.9
124
81
5
287
32
13
16
38
1.87
11513296--11513816
273
1.9
272
79
4
584
33
13
16
36
1.88
11515346--11515382
15
2.4
16
86
13
51
24
21
8
45
1.78
11515580--11515657
37
2.1
38
90
7
124
2
12
5
79
1.00
11519102--11519241
57
2.5
57
89
2
219
32
8
11
47
1.70
11519549--11519596
11
4.5
10
77
12
51
75
0
4
20
0.97
11519945--11519995
10
5.0
10
72
13
50
39
17
1
41
1.61
11520397--11520452
3
18.7
3
92
0
94
37
0
28
33
1.58
11526958--11527024
35
1.9
34
84
3
89
38
20
11
28
1.88
11526959--11527026
17
3.9
17
76
3
64
36
20
11
30
1.89
11527160--11527621
191
2.4
194
79
6
465
20
22
12
44
1.84
11527938--11528091
66
2.3
66
83
2
184
22
18
12
47
1.81
11528164--11528295
67
2.0
66
83
1
165
21
22
12
42
1.87
11528164--11528326
66
2.4
67
79
5
170
22
24
12
41
1.88
11534635--11534730
31
3.3
29
84
8
99
26
4
4
65
1.29
11535142--11535166
3
8.3
3
100
0
50
32
32
0
36
1.58
11535253--11535307
25
2.2
25
84
12
69
76
3
1
18
1.02
11536044--11536081
17
2.1
19
85
9
53
2
2
10
84
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11544346--11544439
46
2.0
46
95
0
170
31
20
8
39
1.82
11547408--11547453
18
2.6
18
85
0
65
17
4
36
41
1.69
11547526--11547551
12
2.2
12
100
0
52
15
0
46
38
1.46
11547506--11547589
19
4.4
19
74
4
71
15
1
34
48
1.53
11548896--11549354
144
3.2
141
73
7
404
40
13
12
34
1.82
11549870--11549942
35
2.1
35
84
5
94
47
8
20
23
1.76
11549962--11550056
34
2.7
35
76
9
104
51
9
17
21
1.73
11550075--11550172
34
2.9
35
81
7
121
54
8
14
23
1.67
11550471--11550743
65
4.2
63
76
10
237
31
18
13
36
1.90
11550498--11550773
65
4.3
65
76
8
217
31
17
14
36
1.89
11550719--11550782
34
1.9
32
84
12
85
29
15
12
42
1.84
11550729--11550807
34
2.3
34
91
0
122
27
15
15
41
1.87
11551052--11551096
23
2.0
22
87
12
65
22
11
0
66
1.22
11551435--11551481
20
2.3
20
96
0
85
38
19
10
31
1.86
11556586--11556625
21
1.9
21
85
10
55
57
10
7
25
1.57
11557709--11557769
20
3.0
20
80
2
59
47
14
8
29
1.73
11557709--11557755
20
2.3
21
85
3
60
48
12
8
29
1.71
11558704--11558753
16
3.2
16
73
21
52
32
0
14
54
1.40
11558703--11558753
15
3.4
14
79
12
57
33
0
13
52
1.41
11559758--11559873
3
40.7
3
77
13
111
67
4
0
28
1.10
11559772--11559914
55
2.6
55
84
5
164
60
6
0
32
1.29
11560794--11560822
14
2.1
14
93
6
51
44
13
6
34
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11560802--11560844
18
2.5
17
85
7
52
48
11
2
37
1.52
11560884--11560950
21
3.3
21
77
10
77
50
8
4
35
1.54
11560939--11560967
15
2.0
15
93
6
51
75
3
0
20
0.94
11561830--11561905
29
2.5
31
85
8
102
67
7
3
21
1.33
11562490--11562570
34
2.4
34
80
0
90
33
18
14
33
1.92
11562504--11562554
17
3.0
17
80
11
59
31
21
15
31
1.95
11563148--11563211
27
2.5
26
78
14
69
17
7
14
60
1.56
11566736--11566775
17
2.4
16
87
8
53
75
5
12
7
1.18
11573955--11573983
13
2.1
14
93
6
51
17
13
0
68
1.20
11581405--11581434
15
1.9
16
93
6
53
50
3
6
40
1.45
11583127--11583152
2
13.0
2
100
0
52
50
0
50
0
1.00
11583859--11583895
19
1.9
19
88
0
56
32
27
16
24
1.96
11587269--11587310
16
2.9
14
86
10
50
50
0
7
42
1.30
11587961--11587990
2
15.5
2
93
6
53
46
0
0
53
1.00
11597760--11597793
2
17.0
2
93
0
59
47
0
2
50
1.16
11597864--11597907
22
2.0
22
82
8
54
54
9
4
31
1.52
11597955--11598019
22
3.0
21
75
16
62
44
1
1
52
1.19
11601452--11603749
161
14.3
161
78
7
1744
42
15
9
32
1.80
11601452--11603749
483
4.8
480
77
6
1987
42
15
9
32
1.80
11603303--11603749
160
2.8
161
80
7
476
43
14
9
32
1.78
11604734--11604770
13
2.8
13
91
0
65
59
5
10
24
1.52
11618558--11618598
7
5.9
7
97
0
73
41
41
0
17
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11620469--11620545
37
2.1
36
85
2
100
38
5
5
50
1.47
11620777--11620971
96
2.1
93
87
4
275
32
5
10
50
1.60
11623287--11623330
17
2.6
17
82
7
54
4
11
4
79
1.02
11626842--11626894
27
2.0
26
82
7
63
62
3
13
20
1.46
11627779--11627999
115
1.9
116
93
0
381
33
17
14
34
1.90
11637184--11637229
19
2.4
19
81
0
65
4
17
4
73
1.15
11639098--11639140
21
2.0
21
82
8
52
41
18
16
23
1.89
11639339--11639386
21
2.3
21
96
0
87
29
14
12
43
1.82
11645741--11645770
15
2.1
15
93
6
53
76
3
13
6
1.11
11646753--11646806
12
5.0
10
80
10
54
72
0
1
25
0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195