genome.fa.s112.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  73  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14470268--14470293	12	2.2	12	100	0	52	11	15	65	7	1.46
14471807--14471858	26	2.0	26	92	0	86	30	19	17	32	1.95
14472711--14472766	26	2.2	26	86	0	76	30	17	25	26	1.97
14473602--14473657	26	2.2	26	90	0	85	26	19	21	32	1.97
14475393--14475445	26	2.0	26	92	0	88	30	20	22	26	1.98
14476608--14477417	404	2.0	404	90	0	1264	28	19	19	32	1.96
14478431--14478483	26	2.0	26	92	7	90	28	18	26	26	1.98
14477557--14479438	900	2.1	900	87	1	2684	25	24	25	25	2.00
14479335--14479382	25	1.9	25	91	0	78	27	18	27	27	1.98
14478660--14481837	827	3.8	827	81	8	3266	26	23	23	26	2.00
14481851--14481903	26	2.0	26	85	7	72	32	16	22	28	1.96
14482683--14483362	338	2.0	340	86	1	934	24	19	24	31	1.98
14483717--14483769	26	2.0	26	92	0	88	26	20	24	28	1.99
14484611--14484663	26	2.0	26	85	0	70	28	20	20	30	1.98
14485468--14485520	26	2.0	26	92	0	88	28	18	24	28	1.98
14483076--14487348	857	4.9	854	86	5	5061	25	23	24	25	2.00
14486321--14486373	26	2.0	26	81	0	61	30	18	22	28	1.98
14485619--14487977	885	2.6	889	86	3	3240	26	23	24	26	2.00
14488762--14488814	26	2.0	26	88	0	79	28	20	22	28	1.99
14490851--14490903	26	2.0	26	92	0	88	24	18	26	30	1.98
14492578--14492629	26	2.0	26	92	0	86	30	19	19	30	1.96
14493482--14493546	26	2.5	26	92	0	112	29	18	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14495802--14495854	26	2.0	26	85	0	70	32	18	22	26	1.97
14494156--14497606	895	3.9	894	85	3	4540	24	23	24	26	2.00
14496697--14496749	26	2.0	26	100	0	106	26	20	26	26	1.99
14499951--14500000	26	1.9	26	100	0	100	30	16	24	30	1.96
14499950--14500007	26	2.2	26	90	0	98	27	17	25	29	1.97
14500865--14500917	26	2.0	26	81	0	61	33	18	22	24	1.97
14501051--14501103	26	2.0	26	96	0	97	28	20	24	26	1.99
14500845--14501256	186	2.2	185	80	1	448	23	26	27	22	1.99
14503538--14503590	26	2.0	26	96	0	97	26	22	24	26	2.00
14503723--14503775	26	2.0	26	96	0	97	26	18	26	28	1.98
14503535--14503934	185	2.2	185	86	0	539	22	27	29	21	1.99
14505467--14505519	26	2.0	26	96	0	97	26	18	26	28	1.98
14503709--14506283	864	2.9	867	84	6	3410	25	24	24	25	2.00
14505632--14507105	715	2.1	715	87	3	2113	26	23	23	26	2.00
14508206--14508258	26	2.0	26	88	0	79	28	18	22	30	1.98
14509106--14509158	26	2.0	26	92	0	88	28	18	24	28	1.98
14509990--14513256	875	3.8	869	86	2	4302	25	23	24	26	2.00
14512379--14512431	26	2.0	26	96	0	97	28	20	24	26	1.99
14513230--14513282	26	2.0	26	92	7	90	26	20	24	28	1.99
14512691--14514238	781	2.0	782	88	1	2300	26	24	22	25	2.00
14514012--14514064	26	2.0	26	92	0	88	28	18	24	28	1.98
14515984--14516035	26	2.0	26	96	0	95	40	11	13	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14516010--14517714	719	2.4	719	96	0	3108	26	23	25	24	2.00
14517775--14517825	26	2.0	26	88	0	75	31	17	21	29	1.96
14518673--14518725	26	2.0	26	89	7	81	30	22	20	26	1.98
14517316--14519602	902	2.5	896	86	2	3197	25	24	24	25	2.00
14518838--14521055	717	3.1	717	92	0	3501	25	23	24	26	2.00
14521885--14521934	26	1.9	26	91	0	82	30	22	22	26	1.99
14523428--14523480	26	2.0	26	96	0	97	28	16	24	30	1.97
14524326--14524379	26	2.1	26	96	0	99	29	20	25	24	1.99
14525219--14525271	26	2.0	26	92	0	88	28	22	22	26	1.99
14526121--14526173	26	2.0	26	85	7	72	28	15	24	32	1.95
14522614--14528532	893	6.6	903	85	3	7305	25	23	24	25	2.00
14527014--14527066	26	2.0	26	92	0	88	28	22	22	26	1.99
14528123--14528156	16	2.1	16	94	0	59	20	26	52	0	1.46
14528741--14528799	26	2.3	26	88	5	86	27	16	25	30	1.97
14529581--14529633	26	2.0	26	92	0	88	28	18	24	28	1.98
14530416--14530468	26	2.0	26	88	0	79	28	16	24	30	1.97
14531217--14531269	26	2.0	26	100	0	106	30	20	22	26	1.98
14530280--14531857	804	2.0	801	87	2	2303	26	24	22	26	2.00
14532113--14532165	26	2.0	26	96	0	97	26	22	26	24	2.00
14531081--14535803	904	5.3	899	86	4	6132	25	24	24	25	2.00
14534778--14534829	26	2.0	26	100	0	104	30	19	23	26	1.98
14535669--14535721	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14536501--14536551	26	2.0	26	88	0	75	29	15	23	31	1.95
14537402--14537454	26	2.0	26	88	0	79	28	20	22	28	1.99
14539200--14539249	26	1.9	26	100	0	100	28	18	24	30	1.97
14535801--14540211	902	4.9	902	89	2	6309	25	23	24	25	2.00
14540101--14540156	26	2.2	26	93	0	94	30	16	21	32	1.95
14542839--14542891	26	2.0	26	96	0	97	26	22	26	24	2.00
14542654--14543050	185	2.1	185	85	1	519	22	26	28	21	1.99
14544626--14544678	26	2.0	26	92	0	88	28	22	22	26	1.99
14546120--14546172	26	2.0	26	96	0	97	26	20	28	24	1.99
14546917--14546967	26	2.0	26	92	0	84	25	17	27	29	1.98
14547158--14547210	26	2.0	26	88	0	79	28	20	22	28	1.99
14548839--14548871	11	3.0	11	100	0	66	18	36	27	18	1.94
14548950--14549002	26	2.0	26	85	0	70	30	20	20	28	1.98
14549814--14549867	26	2.0	27	96	3	101	25	20	27	25	1.99
14550596--14550627	11	2.9	11	95	0	55	15	37	28	18	1.92
14550709--14550761	26	2.0	26	96	0	97	26	22	24	26	2.00
14547184--14552508	885	6.0	870	82	8	6050	25	24	24	25	2.00
14551764--14553948	711	3.1	712	88	1	3179	26	23	23	26	2.00
14555127--14555166	20	2.0	20	100	0	80	30	20	15	35	1.93
14555647--14555696	26	1.9	26	91	0	82	30	18	26	26	1.98
14553956--14555721	896	2.0	902	86	5	2507	25	24	24	26	2.00
14556369--14556421	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14557274--14557324	26	2.0	26	100	0	102	29	19	23	27	1.98
14555748--14557844	905	2.3	896	87	2	2977	25	22	24	27	2.00
14559021--14560425	718	2.0	717	90	2	2201	25	23	24	26	2.00
14560399--14560451	26	2.0	26	92	0	88	30	20	22	26	1.98
14560555--14562074	719	2.1	720	88	2	2268	26	24	23	25	2.00
14562163--14564906	716	3.8	720	89	2	4121	25	22	24	27	2.00
14565896--14565947	26	2.0	26	88	3	79	30	19	21	28	1.97
14567569--14567621	26	2.0	26	92	0	88	30	20	22	26	1.98
14568474--14568524	26	2.0	26	88	0	75	31	17	23	27	1.97
14568443--14568871	185	2.3	185	85	2	585	22	27	27	22	1.99
14570074--14572241	713	3.0	712	87	3	2963	25	22	24	26	2.00
14573120--14573170	26	2.0	26	96	0	93	29	19	25	25	1.99
14571480--14574076	903	2.9	896	85	3	3468	25	23	24	26	2.00
14574118--14574170	26	2.0	26	88	0	79	28	20	22	28	1.99
14573997--14574175	99	1.8	99	86	2	261	27	24	22	25	2.00
14575018--14575070	26	2.0	26	96	0	97	24	20	28	26	1.99
14575752--14575804	26	2.0	26	96	0	97	28	16	24	30	1.97
14577525--14577577	26	2.0	26	96	0	97	28	20	24	26	1.99
14575044--14580969	894	6.6	890	83	5	6862	25	23	24	25	2.00
14578417--14578466	26	1.9	26	87	0	73	30	20	22	28	1.98
14575044--14580969	895	6.6	896	84	4	7447	25	23	24	25	2.00
14580223--14580275	26	2.0	26	92	0	88	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14580984--14581042	26	2.2	27	87	6	93	27	20	23	28	1.99
14580223--14581740	771	2.0	762	87	2	2198	26	21	25	26	2.00
14580966--14589862	889	9.9	890	77	9	7767	25	23	24	25	2.00
14583653--14583704	25	2.0	26	92	3	88	26	15	25	32	1.95
14585403--14585455	26	2.0	26	92	0	88	26	18	24	30	1.98
14585588--14585639	26	2.0	26	92	0	86	28	17	25	28	1.97
14585380--14585798	184	2.3	185	87	4	605	21	29	28	21	1.98
14586430--14586485	26	2.2	26	86	0	76	30	25	21	23	1.99
14587336--14587387	26	2.0	26	92	0	86	30	19	23	26	1.98
14586345--14589862	884	3.9	884	86	3	4640	26	23	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195