genome.fa.s112.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  159  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26524681--26524934	32	8.2	33	76	16	206	53	11	6	28	1.61
26524715--26524756	21	2.0	20	86	4	57	57	7	4	30	1.47
26524650--26524897	118	2.1	118	85	3	338	53	12	5	28	1.60
26524853--26524917	12	5.7	12	69	22	50	53	10	6	29	1.59
26524816--26524939	20	6.8	20	65	30	73	54	11	5	29	1.59
26524899--26525078	24	8.1	22	74	11	138	53	11	4	30	1.56
26525003--26525048	20	2.2	20	88	3	65	56	10	2	30	1.46
26524957--26525078	45	2.6	46	84	6	140	55	11	2	30	1.48
26524979--26525078	21	4.7	21	74	13	80	57	11	2	30	1.45
26525058--26525118	17	3.6	17	80	8	54	50	13	8	27	1.69
26525671--26525714	22	2.0	22	86	4	61	11	15	0	72	1.11
26525735--26525764	12	2.5	12	94	0	51	70	13	0	16	1.18
26525736--26525781	14	3.4	14	85	8	51	73	8	0	17	1.07
26526047--26526385	43	8.0	43	78	3	299	37	18	15	28	1.92
26526047--26526392	128	2.7	125	77	10	333	37	18	15	28	1.92
26526563--26526587	13	1.9	13	100	0	50	40	12	24	24	1.88
26527864--26527897	16	2.2	15	89	5	50	8	8	0	82	0.85
26527846--26527901	23	2.4	23	82	8	69	10	10	0	78	0.96
26529454--26529505	14	3.6	14	85	12	61	15	1	3	78	0.98
26529459--26529527	23	2.9	23	81	16	86	17	5	2	73	1.15
26530651--26530696	24	1.9	24	100	0	92	17	34	8	39	1.80
26533421--26533464	9	5.3	9	78	15	51	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26533416--26533470	15	3.5	15	76	18	58	80	0	20	0	0.72
26533416--26533470	23	2.3	24	84	6	76	80	0	20	0	0.72
26533405--26533445	20	2.0	22	85	9	59	80	2	14	2	0.92
26534774--26535133	127	2.8	127	79	5	302	21	25	11	41	1.86
26535219--26535381	86	1.9	86	82	2	202	34	21	12	31	1.90
26535473--26535736	65	4.0	64	74	10	214	20	20	14	45	1.85
26535520--26535736	65	3.3	66	83	3	226	21	20	12	45	1.84
26542821--26542883	18	3.4	19	78	12	69	55	7	1	34	1.39
26542851--26542889	18	2.3	17	86	8	53	51	10	0	38	1.36
26543041--26543098	24	2.4	24	82	5	73	53	8	3	34	1.49
26543178--26543240	21	3.1	21	80	13	78	50	9	6	33	1.60
26543259--26543465	64	3.4	61	75	12	201	53	10	4	31	1.56
26543363--26543388	12	2.2	12	100	0	52	50	7	7	34	1.60
26543353--26543469	32	3.7	32	83	0	144	53	11	4	30	1.55
26543231--26543461	120	1.9	119	84	9	310	53	10	5	30	1.57
26543414--26543565	24	7.4	20	71	20	77	53	8	3	34	1.48
26543453--26543629	24	7.8	24	76	14	146	54	9	2	32	1.47
26548770--26548814	19	2.4	19	88	7	65	71	4	0	24	1.05
26549825--26549887	18	3.7	18	72	8	60	73	1	6	19	1.13
26556662--26556718	28	2.0	28	89	0	87	42	5	7	45	1.53
26556676--26556737	28	2.2	28	82	5	72	38	8	3	50	1.48
26557063--26557104	22	1.9	22	95	0	75	19	16	19	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26558041--26558071	14	2.2	14	94	0	53	51	6	0	41	1.27
26558554--26558954	221	1.8	221	86	1	588	34	18	12	34	1.89
26563118--26563185	36	1.9	34	85	5	91	39	14	13	32	1.85
26565796--26565821	3	8.7	3	100	0	52	69	0	0	30	0.89
26569807--26569925	62	1.9	61	84	5	159	39	14	14	31	1.86
26569806--26569963	62	2.5	62	78	6	158	40	15	13	30	1.86
26571229--26571273	21	2.2	20	84	11	56	22	8	2	66	1.30
26571229--26571267	20	1.9	21	89	5	62	20	10	2	66	1.33
26571535--26571742	103	2.0	103	96	2	386	19	14	8	57	1.63
26572186--26572211	12	2.2	12	100	0	52	69	0	0	30	0.89
26575926--26575988	20	3.4	19	77	12	60	3	4	7	84	0.87
26576204--26576644	213	2.1	214	86	3	609	35	11	17	36	1.85
26576203--26576655	108	4.2	108	84	5	580	35	11	17	35	1.86
26577216--26577379	45	3.7	45	82	4	174	31	10	17	40	1.83
26578383--26578421	16	2.4	16	91	8	62	0	2	7	89	0.56
26578385--26578421	14	2.7	13	91	8	56	0	2	8	89	0.58
26579265--26579290	7	3.7	7	100	0	52	23	0	0	76	0.78
26579272--26579305	17	2.0	17	88	0	50	17	2	0	79	0.86
26579263--26579316	24	2.2	25	86	3	74	18	1	0	79	0.82
26579263--26579316	25	2.2	24	83	9	65	18	1	0	79	0.82
26588167--26588207	3	14.0	3	89	5	66	34	0	0	65	0.93
26589293--26589355	24	2.6	24	75	5	65	7	15	7	68	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26590642--26590691	27	1.9	25	88	8	73	46	2	0	52	1.12
26592839--26592899	3	20.3	3	100	0	122	32	0	0	67	0.91
26594003--26594058	27	2.0	28	86	10	80	58	14	3	23	1.51
26601226--26601264	7	5.6	7	96	0	69	23	2	0	74	0.94
26601317--26601370	14	3.4	16	74	20	51	53	0	5	40	1.24
26601325--26601359	17	2.0	17	94	5	61	57	0	5	37	1.23
26601998--26602029	15	2.0	17	88	11	50	56	0	12	31	1.37
26605955--26606013	26	2.3	26	96	0	109	20	13	32	33	1.91
26612339--26612387	11	4.5	11	82	5	55	81	4	12	2	0.91
26612337--26612379	17	2.5	17	85	7	52	83	4	9	2	0.87
26613249--26613314	34	1.9	34	87	0	96	25	16	25	31	1.96
26613357--26613481	43	2.9	43	79	8	146	29	14	16	39	1.88
26613444--26613519	34	2.2	34	83	6	91	31	14	15	38	1.88
26613483--26613585	43	2.4	44	90	1	163	31	19	15	33	1.93
26614134--26614178	15	2.9	15	77	6	54	60	0	26	13	1.34
26617101--26617149	22	2.3	21	82	10	55	8	2	26	63	1.34
26617535--26617589	26	2.2	25	83	9	67	10	14	0	74	1.07
26617598--26617632	3	11.7	3	100	0	70	31	0	0	68	0.90
26618897--26618942	17	2.7	17	83	6	58	32	26	2	39	1.68
26622459--26622506	20	2.5	20	80	16	57	43	4	16	35	1.67
26626028--26626067	21	1.9	21	85	10	55	35	2	0	62	1.09
26626799--26626841	17	2.5	18	81	11	54	2	25	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26627632--26627680	27	1.9	26	84	12	66	38	16	14	30	1.88
26636247--26636318	22	3.3	22	76	0	63	50	2	8	38	1.47
26636417--26636512	22	4.4	22	85	7	124	54	2	11	32	1.48
26636828--26637223	22	17.7	22	69	12	121	51	4	8	36	1.51
26636984--26637158	66	2.7	65	76	6	165	52	5	7	34	1.53
26636919--26637485	44	12.9	44	71	7	222	48	5	9	37	1.59
26637108--26637314	67	3.1	67	76	7	181	50	5	7	36	1.54
26637367--26637451	22	3.9	22	78	6	100	44	3	9	42	1.54
26637329--26637451	65	1.9	66	81	8	153	46	5	10	37	1.62
26637437--26637511	22	3.5	21	81	3	69	40	2	14	42	1.60
26637438--26637487	11	4.6	11	76	11	50	42	4	12	42	1.60
26637508--26637585	22	3.6	21	78	11	68	44	7	5	42	1.55
26637549--26637643	11	8.9	10	73	12	73	49	4	4	42	1.41
26637549--26637615	31	2.1	32	94	2	118	49	1	4	44	1.31
26637581--26637689	22	5.0	22	83	3	114	44	7	4	43	1.52
26637530--26637637	53	2.0	54	83	5	139	48	5	4	41	1.47
26637583--26637677	43	2.2	43	88	3	138	47	6	5	41	1.51
26637571--26637690	65	1.9	63	82	3	150	46	6	4	42	1.49
26637997--26638075	22	3.5	22	81	5	88	46	6	10	36	1.63
26637972--26638060	45	2.0	46	84	2	117	47	6	10	35	1.64
26637997--26638050	23	2.4	23	87	3	83	46	7	9	37	1.64
26638189--26638240	26	2.0	26	81	7	61	40	1	11	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26638225--26638365	22	6.4	22	81	4	115	48	7	4	39	1.52
26638114--26638374	66	3.9	65	72	11	170	45	6	7	40	1.57
26638513--26638561	22	2.2	22	77	0	53	44	8	8	38	1.64
26644306--26644584	139	2.0	139	95	0	504	35	16	22	25	1.94
26645368--26645554	61	3.1	61	88	1	286	26	18	32	22	1.97
26645499--26645833	167	2.0	167	91	2	548	34	13	27	24	1.93
26646484--26646785	150	2.0	150	88	0	451	33	18	18	29	1.95
26646666--26646872	104	2.0	104	89	0	315	31	20	16	30	1.95
26659560--26659706	45	3.2	43	76	10	134	27	10	6	55	1.60
26660252--26660501	81	3.1	79	86	10	344	49	5	3	42	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195