genome.fa.s112.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  72  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14315927--14319233	901	3.7	870	80	10	3510	25	23	24	25	2.00
14320061--14320108	25	1.9	25	95	0	87	16	27	31	25	1.97
14321881--14324073	718	3.1	711	87	3	3082	25	23	23	27	2.00
14324049--14324098	25	2.0	26	92	4	84	32	16	20	32	1.94
14324955--14325007	26	2.0	26	92	0	88	26	16	26	30	1.97
14323301--14326231	911	3.2	899	85	3	3904	25	23	25	25	2.00
14325858--14325910	26	2.0	26	85	0	70	30	20	24	24	1.99
14326236--14328096	709	2.6	698	84	5	2351	26	22	23	26	2.00
14328078--14328140	26	2.5	26	90	10	103	28	15	28	26	1.96
14329696--14329746	26	2.0	26	92	0	84	31	15	27	25	1.96
14330587--14330639	26	2.0	26	100	0	106	26	20	26	26	1.99
14331481--14331530	26	1.9	26	95	0	91	30	22	24	24	1.99
14334125--14334175	26	2.0	26	92	0	84	27	15	25	31	1.96
14336853--14336905	26	2.0	26	100	0	106	26	20	26	26	1.99
14328942--14341950	904	14.6	902	86	4	16133	25	24	24	25	2.00
14339913--14339966	26	2.2	23	80	9	63	22	7	22	48	1.75
14341279--14341331	26	2.0	26	96	0	97	26	20	24	28	1.99
14342125--14342177	26	2.0	26	92	0	88	28	18	24	28	1.98
14348477--14348507	12	2.6	12	100	0	62	38	19	29	12	1.89
14348695--14348745	26	2.0	26	92	0	84	27	15	27	29	1.96
14350466--14350518	26	2.0	26	96	0	97	26	18	26	28	1.98
14348489--14351444	878	3.4	881	80	9	3177	25	25	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14351319--14351374	26	2.2	26	96	0	103	26	17	25	30	1.97
14352422--14354607	715	3.1	713	88	4	3143	25	23	24	26	2.00
14354585--14354637	26	2.0	26	96	0	97	28	24	24	22	2.00
14353858--14357287	894	3.9	868	84	6	4244	25	24	24	25	2.00
14356361--14356411	26	2.0	26	88	0	75	27	21	23	27	1.99
14356525--14358696	715	3.1	711	90	2	3347	25	23	24	26	2.00
14357960--14360484	881	2.9	863	86	5	3371	25	23	24	26	2.00
14360439--14363843	883	3.8	872	85	7	4194	25	23	24	26	2.00
14362046--14363912	894	2.1	890	88	4	2665	25	24	24	25	2.00
14363824--14363876	26	2.0	26	88	0	79	26	18	26	28	1.98
14365392--14365444	26	2.0	26	92	0	88	28	16	26	28	1.97
14366185--14366237	26	2.0	26	88	0	79	28	16	24	30	1.97
14367976--14368028	26	2.0	26	92	0	88	26	16	26	30	1.97
14366008--14383229	906	19.2	902	84	4	20463	25	24	24	25	2.00
14371589--14371641	26	2.0	26	92	0	88	28	16	26	28	1.97
14374219--14374272	26	2.1	26	86	6	74	31	20	20	27	1.97
14375113--14375165	26	2.0	26	92	0	88	28	18	24	28	1.98
14376011--14376063	26	2.0	26	96	0	97	26	18	26	28	1.98
14376905--14376954	26	1.9	26	100	0	100	30	20	26	24	1.98
14373353--14383229	901	11.0	899	83	4	11581	25	23	24	26	2.00
14377806--14377858	26	2.0	26	92	0	88	28	22	22	26	1.99
14379580--14379632	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14381373--14381425	26	2.0	26	88	0	79	28	18	22	30	1.98
14381824--14381854	7	4.4	7	100	0	62	45	41	0	12	1.42
14382310--14382359	26	1.9	26	95	0	91	32	18	24	26	1.97
14386626--14386678	26	2.0	26	89	7	81	26	18	26	28	1.98
14388400--14388452	26	2.0	26	96	0	97	24	20	28	26	1.99
14384862--14395307	900	11.6	898	81	6	11336	25	24	25	25	2.00
14389132--14389161	13	2.3	13	94	0	51	23	33	23	20	1.97
14389312--14389364	26	2.0	26	96	0	97	26	18	26	28	1.98
14390207--14390259	26	2.0	26	100	0	106	26	20	26	26	1.99
14391005--14391037	11	3.0	11	100	0	66	9	27	36	27	1.87
14391117--14391169	26	2.0	26	85	0	70	30	20	20	28	1.98
14392015--14392070	26	2.2	26	87	6	78	23	19	23	33	1.97
14392041--14392407	159	2.3	157	86	0	473	22	27	28	21	1.99
14393007--14393059	26	2.0	26	92	0	88	28	18	26	26	1.98
14393909--14393961	26	2.0	26	88	0	79	26	18	26	28	1.98
14392594--14395307	898	3.0	896	86	3	3793	25	24	24	25	2.00
14396358--14396410	26	2.0	26	92	0	88	26	26	20	26	1.99
14395439--14397289	901	2.1	898	86	1	2546	26	23	23	26	2.00
14397318--14401317	898	4.5	900	85	2	5205	25	23	24	26	2.00
14399881--14399933	26	2.0	26	92	0	88	28	22	22	26	1.99
14400782--14400834	26	2.0	26	96	0	97	28	20	24	26	1.99
14400914--14401764	446	1.9	442	85	3	1181	23	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14403575--14403631	24	2.2	24	78	9	60	26	8	14	50	1.71
14403037--14403691	342	1.9	342	86	3	933	25	18	23	32	1.97
14404950--14405002	26	2.0	26	96	0	97	26	18	26	28	1.98
14405852--14405903	26	2.0	26	96	0	95	30	17	23	28	1.97
14403384--14408142	899	5.3	890	84	6	5632	25	23	24	26	2.00
14406709--14406756	25	1.9	25	100	0	96	25	20	29	25	1.99
14405831--14408142	869	2.7	864	84	5	2926	25	23	24	26	2.00
14409823--14409874	25	2.0	26	96	3	97	26	17	26	28	1.97
14410720--14410772	26	2.0	26	96	0	97	26	18	26	28	1.98
14412288--14412340	26	2.0	26	100	0	106	26	20	26	26	1.99
14413173--14413225	26	2.0	26	96	0	97	26	22	24	26	2.00
14411562--14414101	875	2.9	882	88	3	3672	25	23	25	26	2.00
14414787--14414839	26	2.0	26	96	0	97	28	20	24	26	1.99
14414963--14416428	713	2.1	716	89	2	2275	26	22	23	26	2.00
14416402--14416454	26	2.0	26	96	0	97	28	20	24	26	1.99
14417294--14417347	26	2.1	26	89	0	81	31	20	24	24	1.98
14415631--14418200	882	2.9	877	84	4	3454	26	24	24	25	2.00
14418837--14418887	26	2.0	26	96	0	93	29	15	25	29	1.96
14420824--14420876	26	2.0	26	92	0	88	26	20	26	26	1.99
14420419--14422388	571	3.5	571	91	1	3107	23	26	28	22	1.99
14421964--14422016	26	2.0	26	92	0	88	26	20	26	26	1.99
14423579--14423631	26	2.0	26	88	0	79	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14425209--14425261	26	2.0	26	96	0	97	28	20	24	26	1.99
14425969--14426002	17	2.0	17	94	0	59	20	35	23	20	1.96
14424466--14431284	896	7.7	870	80	9	7021	25	23	24	26	2.00
14427408--14427465	21	2.7	21	83	2	80	32	5	10	51	1.58
14427862--14427914	26	2.0	26	88	0	79	28	20	22	28	1.99
14428766--14428817	26	2.0	27	92	3	88	26	17	28	26	1.97
14430679--14432860	714	3.0	713	80	8	2307	26	23	23	25	2.00
14432835--14432886	26	2.0	26	88	7	79	30	19	23	26	1.98
14433004--14435219	713	3.1	713	91	1	3428	26	23	23	26	2.00
14436028--14436080	26	2.0	26	96	0	97	24	20	28	26	1.99
14434441--14438956	875	5.2	860	83	8	5154	25	23	25	25	2.00
14439401--14439450	26	1.9	26	95	0	91	28	18	26	28	1.98
14440291--14440343	26	2.0	26	92	0	88	28	18	24	28	1.98
14440799--14440851	26	2.0	26	96	0	97	26	22	26	24	2.00
14441702--14441754	26	2.0	26	88	0	79	28	18	22	30	1.98
14440515--14442782	904	2.5	901	87	1	3319	24	25	25	24	2.00
14443326--14446897	912	3.9	904	93	1	5836	25	23	25	25	2.00
14445340--14445373	4	8.5	4	93	0	59	2	26	70	0	1.01
14447203--14447255	26	2.0	26	88	0	79	30	18	20	30	1.97
14448103--14448154	26	2.0	26	92	0	86	26	19	26	26	1.99
14447381--14450267	871	3.3	878	83	7	3542	25	23	24	26	2.00
14449844--14449896	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14455871--14455923	26	2.0	26	100	0	106	26	20	26	26	1.99
14457648--14457697	26	1.9	26	95	0	91	32	22	22	24	1.98
14458547--14458599	26	2.0	26	85	0	70	30	22	20	26	1.98
14456769--14469465	904	14.2	900	85	4	15895	25	24	24	25	2.00
14455168--14469482	904	16.1	873	83	6	15750	25	24	24	25	2.00
14463894--14463946	26	2.0	26	88	0	79	32	18	22	26	1.97
14463012--14477013	902	15.8	895	82	6	15293	25	24	24	25	2.00
14465683--14465735	26	2.0	26	92	0	88	28	18	24	28	1.98
14466561--14466616	26	2.2	26	93	0	94	28	21	21	28	1.99
14469233--14469285	26	2.0	26	96	0	97	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195