genome.fa.s112.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  54  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11239944--11239981	18	1.9	19	85	15	51	71	5	13	10	1.30
11248349--11248391	1	43.0	1	80	0	50	90	2	4	2	0.59
11248341--11248393	23	2.3	24	81	15	67	86	3	7	1	0.75
11248341--11248395	22	2.4	23	87	6	76	87	3	7	1	0.73
11255709--11255893	73	2.5	73	81	0	219	33	20	22	24	1.97
11256972--11257262	49	5.5	54	77	12	286	35	13	15	36	1.86
11257013--11257262	104	2.4	103	84	6	317	34	14	15	36	1.88
11259469--11259518	16	3.0	17	77	16	68	68	0	12	20	1.21
11265653--11265686	16	2.1	16	88	0	50	50	0	2	47	1.16
11265828--11265861	3	11.7	3	93	6	61	35	0	0	64	0.94
11270472--11270566	26	3.6	26	73	17	88	35	1	6	56	1.31
11270465--11270566	48	2.1	49	83	7	127	35	0	5	57	1.29
11270471--11270563	5	17.6	5	75	8	69	35	1	6	56	1.32
11270465--11270627	3	59.0	3	66	18	50	33	4	6	56	1.44
11283269--11283455	56	3.3	56	79	4	207	24	28	17	29	1.97
11283588--11283808	26	8.1	27	72	15	143	32	4	5	57	1.42
11283647--11283780	11	12.5	11	69	23	65	33	5	3	56	1.41
11283646--11283809	3	58.7	3	72	13	109	31	4	4	59	1.38
11283603--11283710	53	2.1	51	83	11	130	34	3	6	55	1.43
11283702--11283811	54	2.0	54	85	3	150	30	5	2	61	1.32
11284288--11284332	11	4.0	11	81	16	56	42	2	4	51	1.34
11284663--11284709	19	2.5	19	82	6	60	27	0	2	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11284663--11284716	19	2.8	19	75	10	56	27	0	1	70	0.98
11288718--11288753	13	2.8	13	86	0	54	72	0	2	25	0.98
11289109--11289148	16	2.4	17	83	12	55	62	0	0	37	0.95
11289931--11289955	2	12.5	2	100	0	50	52	0	0	48	1.00
11298644--11298694	21	2.4	21	83	0	66	39	9	31	19	1.84
11299624--11299659	10	3.6	10	84	0	54	47	16	11	25	1.79
11299620--11299667	20	2.4	20	78	0	60	56	14	8	20	1.64
11303751--11303797	16	2.9	17	78	9	53	46	2	0	51	1.13
11303758--11304058	152	1.9	159	83	9	395	54	5	4	34	1.45
11303888--11304468	201	2.9	195	83	7	728	54	5	7	33	1.52
11319878--11319914	12	2.8	14	80	12	51	70	8	0	21	1.13
11321431--11321462	15	2.1	16	94	5	57	71	6	9	12	1.29
11324639--11324697	21	2.8	21	76	0	64	40	18	20	20	1.91
11324856--11324885	16	1.9	15	93	6	51	10	0	6	83	0.81
11324873--11324914	22	2.0	22	90	9	70	30	0	4	64	1.14
11325073--11325124	27	1.9	27	88	0	77	30	3	25	40	1.73
11331289--11331356	19	3.6	19	77	0	73	39	47	1	11	1.49
11331293--11331382	38	2.4	38	79	5	94	40	46	1	12	1.48
11331377--11331432	26	2.2	26	96	0	103	48	35	0	16	1.46
11331437--11331478	19	2.3	19	87	4	59	40	38	4	16	1.70
11331466--11331601	19	7.2	19	70	11	84	47	38	1	12	1.51
11331487--11331552	31	2.1	31	85	0	87	45	39	3	12	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11338888--11338932	20	2.2	21	84	4	56	46	6	0	46	1.29
11342311--11342363	3	17.3	3	88	11	81	66	3	0	30	1.10
11342446--11342492	2	24.5	2	78	8	53	2	53	0	44	1.12
11343738--11343773	2	18.0	2	100	0	72	0	50	0	50	1.00
11345406--11345444	19	2.1	19	90	0	60	61	0	5	33	1.18
11345771--11345865	9	9.8	9	69	17	50	21	4	1	73	1.06
11345771--11345859	22	4.3	19	76	18	81	21	4	1	73	1.08
11346026--11346276	126	2.0	127	82	5	312	52	5	7	33	1.53
11347525--11347570	23	2.0	23	87	8	67	56	0	6	36	1.25
11347678--11347732	24	2.3	24	81	9	60	74	1	5	18	1.10
11353622--11353752	69	1.9	69	80	9	151	36	12	16	34	1.87
11356122--11356264	72	2.0	72	84	2	189	25	18	17	38	1.93
11359957--11360057	34	2.9	33	82	7	121	30	16	17	34	1.93
11360154--11360218	33	1.9	34	84	3	87	33	13	16	35	1.89
11359988--11360383	165	2.4	164	81	5	431	32	13	17	36	1.89
11360321--11360408	34	2.6	33	83	1	113	26	14	21	37	1.92
11360917--11360969	3	17.7	3	96	0	97	32	1	0	66	1.03
11361869--11361921	6	8.7	6	84	12	72	15	0	3	81	0.83
11364629--11364672	3	14.7	3	100	0	88	65	0	0	34	0.93
11364671--11364696	3	8.7	3	100	0	52	34	0	30	34	1.58
11365969--11366108	64	2.3	62	77	14	146	29	16	15	39	1.89
11366428--11366737	149	2.1	150	82	5	378	33	10	15	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11367384--11367408	13	1.9	13	100	0	50	28	0	8	64	1.22
11367468--11367515	3	16.0	3	91	0	78	64	2	2	31	1.16
11370933--11370958	12	2.2	12	100	0	52	61	0	0	38	0.96
11371176--11371266	31	2.9	30	71	10	76	40	6	5	47	1.53
11372551--11372596	5	8.8	5	81	9	56	21	0	2	76	0.90
11372551--11372590	11	3.7	11	93	3	64	22	0	0	77	0.77
11372553--11372596	16	2.7	17	86	6	56	20	0	2	77	0.88
11373511--11373562	15	3.8	13	76	16	52	42	1	1	53	1.23
11373671--11373758	32	2.8	31	76	8	88	48	5	6	38	1.53
11378268--11378396	2	65.0	2	84	1	134	45	5	4	44	1.47
11379769--11379798	15	2.0	15	100	0	60	20	6	13	60	1.55
11380336--11380387	23	2.3	23	82	0	68	78	1	3	15	0.98
11380950--11381005	20	2.6	22	80	11	71	76	1	17	3	1.01
11384756--11384789	12	2.6	13	90	9	52	61	11	8	17	1.54
11385948--11385994	23	2.1	22	92	4	76	10	2	8	78	1.04
11386072--11386112	18	2.2	19	86	4	57	17	17	2	63	1.42
11389783--11389849	24	3.0	22	79	16	61	73	7	7	11	1.26
11390188--11390246	16	3.8	16	74	24	54	59	3	0	37	1.14
11390953--11390987	17	2.1	16	89	5	52	77	5	8	8	1.13
11393321--11393368	2	24.0	2	85	8	62	50	2	2	45	1.25
11395112--11395151	20	2.0	21	90	5	64	45	15	15	25	1.84
11404037--11404086	20	2.5	20	86	3	64	46	16	14	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11405432--11405461	10	3.0	10	100	0	60	50	20	10	20	1.76
11418248--11418306	18	3.3	18	70	0	64	49	13	8	28	1.71
11432423--11432591	88	1.9	88	96	0	311	36	18	10	34	1.85
11435552--11435946	144	2.8	140	78	10	406	33	11	10	43	1.77
11437294--11437559	7	40.4	7	67	12	118	43	36	1	19	1.58
11437425--11437509	20	4.2	20	81	3	91	45	35	0	18	1.50
11437294--11437499	67	3.1	67	71	8	152	43	35	0	20	1.59
11437519--11437559	19	2.2	19	86	4	57	46	39	0	14	1.45
11440238--11440316	29	2.7	29	82	9	81	44	30	5	20	1.73
11440400--11440459	20	3.0	20	69	13	52	45	31	0	23	1.53
11440451--11440567	29	4.0	29	77	10	105	46	34	2	17	1.62
11440543--11440633	30	3.1	29	81	9	94	48	40	0	10	1.38
11441645--11441712	22	2.9	23	76	10	59	36	1	1	60	1.15
11441866--11441923	25	2.4	25	77	5	66	31	3	1	63	1.21
11442968--11443018	11	4.1	12	77	22	52	23	1	0	74	0.92
11442976--11443010	15	2.4	14	86	9	52	20	2	0	77	0.90
11449112--11449136	2	12.5	2	100	0	50	0	0	48	52	1.00
11449490--11449541	27	2.0	25	88	7	77	32	25	11	30	1.91
11450933--11450962	16	1.9	15	93	6	51	36	0	0	63	0.95
11455207--11455351	5	27.2	5	71	15	71	36	5	4	53	1.43
11455286--11455365	3	28.3	3	75	12	80	33	6	0	60	1.22
11455207--11455364	8	18.4	8	72	19	81	36	5	3	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11455207--11455371	26	6.0	27	73	17	85	35	5	4	55	1.43
11456176--11456218	19	2.3	19	87	0	59	16	4	0	79	0.90
11456353--11456397	16	2.6	18	75	17	58	60	13	0	26	1.34
11460390--11460448	13	4.5	13	75	10	57	77	0	15	6	0.96
11460413--11460448	15	2.4	15	95	0	63	88	0	8	2	0.59
11462568--11462703	5	26.2	5	74	14	82	34	3	5	56	1.39
11462571--11462703	18	7.8	17	71	20	77	34	3	5	56	1.40
11462568--11462737	21	7.8	21	69	17	91	33	4	4	57	1.38
11462645--11462744	3	35.3	3	75	11	95	30	5	0	65	1.14
11462650--11462738	19	4.7	20	74	14	80	30	5	0	64	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195