genome.fa.s112.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  180  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30534637--30534734	38	2.5	40	74	14	96	50	6	2	41	1.39
30538586--30538614	2	14.5	2	100	0	58	0	48	0	51	1.00
30539783--30539818	18	2.0	18	88	0	54	83	5	11	0	0.80
30543856--30543892	2	19.0	2	94	5	67	48	0	0	51	1.00
30547820--30547865	18	2.6	18	78	0	56	47	2	0	50	1.13
30551445--30551480	19	1.9	19	88	5	56	69	0	0	30	0.89
30553252--30553324	35	2.1	35	84	0	92	45	30	2	21	1.66
30559748--30559777	14	2.1	14	93	0	51	60	3	26	10	1.45
30559936--30560122	73	2.6	72	83	4	232	48	2	6	42	1.42
30560296--30560590	143	2.1	144	93	1	504	42	6	10	41	1.63
30560718--30560780	28	2.2	30	85	5	85	36	1	1	60	1.16
30561089--30561141	17	3.2	17	76	13	65	67	0	5	26	1.12
30561092--30561141	15	2.9	18	74	17	61	70	0	6	24	1.10
30561250--30561290	21	2.0	21	95	0	73	53	2	4	39	1.35
30561599--30561627	9	3.2	9	100	0	58	68	0	0	31	0.89
30561600--30561668	17	4.0	17	77	9	61	60	1	0	37	1.06
30563161--30563203	18	2.4	18	80	0	59	44	0	0	55	0.99
30572432--30572473	20	2.1	20	86	8	59	38	0	4	57	1.20
30576178--30576218	12	3.4	13	80	12	52	51	0	0	48	1.00
30576183--30576248	17	3.9	16	75	13	62	48	1	0	50	1.10
30576985--30577041	9	6.3	9	83	0	69	80	1	12	5	0.95
30576985--30577041	27	2.1	27	93	0	96	80	1	12	5	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30577984--30578100	15	8.1	14	76	13	103	46	32	0	21	1.52
30577987--30578096	43	2.5	44	84	12	147	48	30	0	20	1.50
30577987--30578101	29	3.9	29	75	10	108	46	33	0	20	1.50
30578186--30578320	29	4.7	28	71	20	91	45	27	1	25	1.62
30578114--30578277	72	2.3	72	87	5	242	49	25	1	23	1.60
30578115--30578277	14	11.3	14	68	10	71	49	25	1	23	1.60
30578406--30578459	28	1.9	28	84	0	72	51	27	0	20	1.47
30578282--30578472	29	6.7	28	71	7	116	47	29	1	21	1.60
30579568--30579638	35	2.0	35	100	0	142	22	18	11	47	1.80
30582846--30582871	11	2.4	11	100	0	52	50	0	34	15	1.45
30591127--30591773	109	5.9	109	80	4	642	21	22	12	43	1.86
30591127--30591787	218	3.0	216	83	4	756	21	22	12	43	1.86
30591108--30591794	328	2.1	327	83	4	884	21	22	12	43	1.86
30591840--30591990	35	4.2	35	67	14	101	15	21	18	45	1.86
30592013--30592108	36	2.7	37	77	9	92	21	19	6	52	1.68
30592796--30592838	22	2.0	22	86	9	61	76	9	2	11	1.10
30592796--30592838	21	2.0	23	86	9	63	76	9	2	11	1.10
30593885--30593927	15	2.9	15	85	0	59	48	37	0	13	1.43
30593979--30594139	29	5.5	29	68	15	100	47	27	1	23	1.60
30594008--30594308	15	20.9	14	65	15	87	46	30	1	21	1.61
30594008--30594312	29	10.6	28	72	12	183	47	29	1	21	1.60
30594153--30594319	28	5.9	28	76	6	147	50	29	1	18	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30599482--30599515	10	3.4	10	88	11	52	41	2	0	55	1.15
30609663--30609703	19	2.1	20	86	4	57	43	17	2	36	1.62
30610776--30610811	18	2.0	18	89	10	56	52	0	0	47	1.00
30611375--30611438	26	2.4	26	92	2	101	17	7	3	71	1.22
30612179--30612223	19	2.4	18	81	3	54	13	11	8	66	1.44
30612587--30612647	26	2.3	26	78	15	63	13	1	11	73	1.16
30612859--30613344	96	5.0	97	80	8	470	37	20	12	28	1.90
30612881--30613344	48	9.6	49	75	12	361	37	21	12	28	1.90
30623887--30623942	21	2.7	21	86	10	71	14	0	8	76	1.00
30625522--30625572	26	2.0	26	96	0	93	17	5	5	70	1.28
30625522--30625570	13	3.7	14	73	13	50	18	6	6	69	1.31
30627301--30627352	24	2.2	24	89	0	77	23	5	11	59	1.53
30630052--30630083	15	2.1	15	94	0	55	50	25	3	21	1.64
30630174--30630224	26	2.0	26	88	0	75	45	15	15	23	1.85
30630180--30630252	26	2.8	26	85	0	92	41	15	16	27	1.88
30630297--30630583	124	2.3	124	78	5	292	36	10	14	37	1.81
30630892--30630992	50	2.0	49	96	1	184	49	8	9	31	1.67
30631250--30631308	29	2.0	29	96	0	109	47	0	3	49	1.18
30631269--30631411	44	3.1	44	69	16	119	45	0	4	49	1.26
30631328--30631401	29	2.5	29	81	14	89	47	0	4	48	1.20
30631234--30631409	93	1.9	94	88	3	266	46	0	3	49	1.25
30631330--30631416	29	3.0	29	74	14	74	47	0	3	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30631269--30631416	48	3.2	46	67	19	108	45	0	4	49	1.25
30631474--30631521	15	2.9	18	71	28	52	50	4	0	45	1.21
30632528--30632566	15	2.6	16	80	12	55	41	5	0	53	1.23
30633139--30633216	20	3.7	20	77	14	66	39	0	2	57	1.12
30633306--30633358	10	5.6	10	75	20	51	64	0	0	35	0.94
30633320--30633358	20	2.1	19	90	9	62	69	0	0	30	0.89
30634704--30634743	20	2.0	20	85	0	53	5	10	0	85	0.75
30634713--30634746	12	2.8	12	90	4	50	0	14	0	85	0.60
30634713--30634746	11	3.0	12	87	12	54	0	14	0	85	0.60
30639661--30639687	8	3.4	8	100	0	54	62	0	0	37	0.95
30647512--30647539	4	7.0	4	100	0	56	25	0	25	50	1.50
30653929--30653955	14	1.9	14	100	0	54	7	48	0	44	1.31
30656153--30656261	54	2.0	54	100	0	218	33	27	12	26	1.93
30656341--30656369	6	4.8	6	100	0	58	34	17	0	48	1.47
30661508--30661591	42	2.0	42	100	0	168	30	19	14	35	1.91
30665416--30665471	28	2.0	28	92	0	94	10	46	3	39	1.56
30665425--30665483	28	2.1	28	83	0	73	13	52	5	28	1.61
30690674--30690729	28	2.0	28	92	0	94	39	3	44	12	1.60
30699167--30699197	15	2.1	15	93	0	53	51	12	0	35	1.40
30701359--30701467	54	2.0	54	100	0	218	26	12	27	33	1.93
30703665--30703693	14	2.1	14	100	0	58	44	0	48	6	1.29
30710014--30710050	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30709989--30710103	60	1.9	60	94	0	203	40	16	0	42	1.48
30715546--30715585	16	2.5	16	84	8	55	40	0	0	60	0.97
30717317--30717370	25	2.0	26	82	10	65	46	1	1	50	1.23
30717776--30717802	8	3.4	8	100	0	54	37	0	0	62	0.95
30719274--30719345	29	2.4	29	80	15	76	41	2	2	52	1.30
30722716--30722746	11	2.7	12	90	10	55	87	0	12	0	0.55
30724100--30724155	9	5.5	11	79	18	52	37	0	0	62	0.95
30724101--30724158	19	2.9	21	78	17	61	36	0	0	63	0.94
30724101--30724158	20	2.9	20	82	12	66	36	0	0	63	0.94
30724115--30724180	9	6.8	9	77	14	51	40	0	0	59	0.98
30724200--30724287	25	3.6	25	68	23	69	59	1	2	37	1.18
30724248--30724291	11	4.2	11	85	11	56	59	0	0	40	0.98
30724246--30724283	20	1.9	20	94	0	67	65	0	0	34	0.93
30724214--30724290	5	15.2	5	68	12	50	57	1	2	38	1.21
30724700--30724743	17	2.6	17	89	3	63	47	0	6	45	1.29
30725968--30726015	15	2.9	18	69	30	52	45	0	4	50	1.21
30726073--30726160	29	3.0	29	75	15	76	50	3	0	46	1.18
30726080--30726256	94	1.9	94	89	2	275	49	3	0	45	1.24
30726182--30726240	29	2.0	29	96	0	109	49	3	0	47	1.18
30726498--30726597	49	2.0	49	98	0	191	31	10	9	50	1.67
30727305--30727377	26	2.8	26	85	0	92	27	16	15	41	1.88
30727474--30727505	15	2.1	15	94	0	55	21	3	25	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30730205--30730260	24	2.4	24	87	3	78	60	10	5	23	1.50
30731989--30732039	26	2.0	26	96	0	93	70	5	5	17	1.28
30732199--30732246	19	2.6	18	70	9	51	62	0	6	31	1.20
30733621--30733676	21	2.7	21	86	10	71	76	8	0	14	1.00
30740209--30740286	2	39.0	2	94	0	75	42	3	7	46	1.51
30740835--30740870	17	2.1	17	90	10	56	22	30	5	41	1.76
30742594--30742628	18	1.9	18	88	0	52	57	0	0	42	0.99
30744538--30744570	15	2.1	16	88	5	50	42	0	0	57	0.98
30757270--30757345	38	2.0	38	94	0	134	28	26	15	28	1.96
30770922--30770950	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195