genome.fa.s112.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  130  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22027254--22027421	12	13.6	12	70	14	76	75	3	5	16	1.13
22027266--22027336	6	12.3	6	72	14	60	80	1	4	14	0.93
22027270--22027410	17	8.4	17	69	12	78	74	4	4	17	1.14
22027730--22027772	20	2.2	20	86	0	59	13	16	25	44	1.85
22028233--22028290	18	3.2	18	75	15	66	70	0	6	22	1.10
22028397--22028442	17	2.5	20	82	13	62	63	2	2	32	1.19
22028393--22028507	21	5.6	20	69	25	71	65	3	0	30	1.15
22028743--22028797	1	55.0	1	77	0	56	0	1	9	89	0.57
22028726--22028797	9	7.7	9	90	6	90	0	1	12	86	0.65
22028726--22028797	19	3.8	18	85	8	90	0	1	12	86	0.65
22028804--22029016	41	5.1	41	89	4	279	38	22	15	24	1.92
22030045--22030138	8	11.6	8	85	10	129	11	13	0	74	1.07
22030045--22030138	17	5.8	16	85	8	129	11	13	0	74	1.07
22037329--22037360	15	2.1	16	94	5	57	50	6	25	18	1.70
22040523--22040736	57	3.7	57	88	9	326	35	12	6	46	1.67
22040523--22040746	118	1.9	115	90	6	362	34	12	6	46	1.67
22040758--22040840	9	9.3	9	71	15	57	79	0	7	13	0.92
22040758--22040837	20	4.0	20	75	22	78	80	0	7	12	0.91
22041762--22041886	55	2.3	55	77	10	132	68	5	7	18	1.33
22041879--22042015	21	6.4	21	67	22	72	67	2	1	28	1.14
22041977--22042028	27	1.9	27	88	7	79	69	3	0	26	1.06
22042271--22042319	26	1.9	26	91	4	82	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22043164--22043214	24	2.1	25	92	3	86	27	17	23	31	1.97
22044941--22044993	26	2.0	26	92	0	88	28	18	24	28	1.98
22045845--22045894	25	2.0	26	92	4	84	28	20	22	30	1.98
22046751--22046803	26	2.0	26	96	0	97	26	18	26	28	1.98
22047638--22047693	26	2.2	26	93	0	94	26	17	23	32	1.97
22048528--22048578	26	2.0	26	92	0	84	25	19	29	25	1.99
22042189--22054613	887	14.0	887	85	5	14966	25	23	24	25	2.00
22049404--22049456	26	2.0	26	88	0	79	26	18	26	28	1.98
22050283--22050335	26	2.0	26	96	0	97	28	20	24	26	1.99
22051179--22051231	26	2.0	26	96	0	97	26	18	26	28	1.98
22052070--22052122	26	2.0	26	96	0	97	28	20	24	26	1.99
22053808--22053862	26	2.1	26	89	0	83	29	18	21	30	1.97
22055309--22055361	26	2.0	26	96	0	97	26	18	26	28	1.98
22057081--22057135	26	2.1	26	93	0	92	27	14	23	34	1.94
22057888--22057917	14	2.1	14	93	0	51	13	20	40	26	1.89
22057986--22058038	26	2.0	26	88	0	79	30	18	24	26	1.98
22058891--22058943	26	2.0	26	96	0	97	26	20	24	28	1.99
22059775--22059827	26	2.0	26	96	0	97	26	20	24	28	1.99
22056211--22061670	905	6.1	897	87	3	7215	25	23	24	25	2.00
22061580--22061638	26	2.3	26	88	5	86	25	16	27	30	1.97
22062331--22062383	26	2.0	26	96	0	97	26	18	26	28	1.98
22063233--22063285	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22061612--22065101	902	3.9	901	86	5	4604	25	24	25	24	2.00
22064074--22064126	26	2.0	26	96	0	97	28	20	24	26	1.99
22064979--22065031	26	2.0	26	100	0	106	26	24	26	22	2.00
22065550--22065602	26	2.0	26	96	0	97	28	20	24	26	1.99
22067320--22067372	26	2.0	26	96	0	97	28	13	26	32	1.93
22068221--22068272	25	2.0	26	88	3	79	26	21	21	30	1.98
22069110--22069162	26	2.0	26	92	0	88	24	18	28	28	1.98
22065165--22073673	886	9.5	899	83	6	9935	25	24	24	25	2.00
22070802--22070937	69	2.0	69	95	2	247	27	32	25	15	1.95
22072734--22072786	26	2.0	26	96	0	97	28	20	24	26	1.99
22073621--22073699	26	3.0	26	96	0	149	26	18	26	27	1.98
22074382--22074434	26	2.0	26	92	7	90	26	16	26	30	1.97
22073673--22076163	882	2.8	876	87	2	3532	26	23	24	26	2.00
22076266--22076291	12	2.2	12	100	0	52	15	42	19	23	1.89
22079336--22079365	8	3.8	8	95	0	51	6	26	66	0	1.16
22076999--22080936	864	4.4	884	83	8	4399	26	24	23	25	2.00
22080958--22080991	16	2.1	16	88	0	50	11	20	67	0	1.21
22081640--22081692	26	2.0	26	92	0	88	24	18	28	28	1.98
22082539--22082591	26	2.0	26	89	7	81	24	16	28	30	1.97
22083403--22083453	26	2.0	26	100	0	102	27	19	25	27	1.99
22080975--22084542	899	4.0	883	83	5	4232	25	23	24	26	2.00
22084302--22084354	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22084668--22086732	718	2.9	699	86	6	2669	26	23	23	27	2.00
22086734--22086784	26	2.0	26	100	0	102	27	15	27	29	1.96
22087637--22087689	26	2.0	26	88	0	79	28	16	24	30	1.97
22086013--22096510	876	11.8	899	85	4	13253	25	23	24	25	2.00
22090312--22090364	26	2.0	26	88	0	79	26	16	24	32	1.97
22092080--22092132	26	2.0	26	92	0	88	28	20	22	28	1.99
22092973--22093025	26	2.0	26	100	0	106	26	20	26	26	1.99
22091209--22096510	894	5.9	895	86	4	7005	25	24	24	25	2.00
22094738--22094790	26	2.0	26	96	0	97	26	22	24	26	2.00
22095644--22095693	26	1.9	26	100	0	100	28	22	26	24	1.99
22097430--22097544	59	2.0	58	94	5	205	48	8	19	23	1.76
22099944--22099983	19	2.1	19	85	0	53	32	0	30	37	1.58
22100189--22100213	12	2.1	12	100	0	50	32	8	8	52	1.60
22108905--22108942	6	6.5	6	81	6	51	39	0	0	60	0.97
22108959--22112328	480	7.1	480	97	1	6441	30	13	18	38	1.88
22108959--22112328	948	3.5	960	97	1	6441	30	13	18	38	1.88
22114385--22115496	501	2.2	498	83	2	1392	40	16	12	31	1.85
22114523--22122200	476	15.8	476	82	5	8518	39	17	11	31	1.85
22116927--22118399	499	2.9	497	83	4	1849	39	17	11	31	1.85
22114523--22122198	953	7.9	971	82	6	8456	39	17	11	31	1.85
22118401--22119873	498	2.9	499	85	2	2069	40	16	11	31	1.84
22122960--22123270	41	7.3	43	78	10	236	40	19	14	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22124286--22124356	14	5.0	14	78	14	65	8	11	0	80	0.91
22124274--22124359	25	3.2	28	76	18	85	9	12	0	77	0.98
22124310--22124359	9	5.3	9	80	17	57	8	10	0	82	0.86
22134780--22138016	475	6.6	490	83	5	3585	31	10	17	40	1.84
22138018--22139338	499	2.7	495	84	5	1721	32	10	16	39	1.84
22140201--22142128	498	3.8	498	84	5	2484	30	11	17	40	1.84
22141814--22141866	24	2.2	24	100	0	106	16	3	30	49	1.64
22143773--22144204	217	2.0	217	91	0	702	46	16	8	28	1.75
22142568--22144705	719	3.0	720	88	2	3068	42	17	10	30	1.82
22143990--22145703	500	3.5	502	84	4	2203	41	17	10	30	1.84
22151179--22151219	20	2.1	19	86	4	55	48	2	0	48	1.14
22151534--22151681	34	4.4	33	72	10	102	29	14	18	37	1.90
22151560--22151712	68	2.2	68	84	2	191	33	13	16	35	1.89
22159694--22160660	186	5.2	185	85	3	1210	35	13	11	39	1.81
22159694--22160661	371	2.6	367	87	4	1293	35	13	11	39	1.81
22161256--22161315	24	2.5	24	94	0	102	26	10	26	36	1.88
22161256--22161315	12	5.0	12	79	0	66	26	10	26	36	1.88
22161273--22161355	36	2.3	36	79	8	89	21	10	31	36	1.88
22165165--22165210	21	2.1	22	84	11	60	19	21	4	54	1.61
22167060--22167096	17	2.2	17	90	4	58	16	0	0	83	0.64
22173607--22173657	25	2.0	25	92	0	84	45	15	7	31	1.75
22176128--22176180	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22176468--22177422	482	2.0	483	94	1	1677	26	22	20	30	1.98
22177512--22177564	26	2.0	26	85	7	72	30	20	22	26	1.98
22178382--22178434	26	2.0	26	89	7	81	26	18	24	30	1.98
22179160--22179210	17	3.0	17	85	0	66	9	1	45	43	1.48
22179196--22179235	21	1.9	21	84	0	53	15	2	37	45	1.59
22179307--22179335	13	2.1	14	93	6	51	31	0	27	41	1.56
22179312--22179469	7	23.7	7	68	16	70	17	1	35	44	1.60
22179312--22179361	20	2.5	20	81	9	59	22	2	30	46	1.63
22179326--22179393	26	2.6	26	80	15	70	16	2	36	44	1.63
22179356--22179406	19	2.7	19	78	9	59	13	1	41	43	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195