genome.fa.s112.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  160  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26661700--26661982	44	6.4	44	84	3	291	43	13	13	29	1.82
26661700--26661994	87	3.3	88	79	6	301	42	13	13	30	1.83
26661690--26661994	131	2.3	133	80	6	334	42	14	13	29	1.84
26662330--26662438	44	2.5	44	80	7	105	43	16	6	33	1.74
26662527--26662568	14	3.0	14	92	0	75	35	16	7	40	1.76
26669901--26669969	36	1.9	36	85	5	95	44	8	15	30	1.77
26682290--26682468	73	2.5	72	79	4	207	32	23	21	22	1.98
26685128--26685185	21	2.7	21	86	2	80	25	22	31	20	1.98
26686406--26686431	9	2.9	9	100	0	52	42	0	0	57	0.98
26686722--26687027	151	2.0	153	87	2	438	41	7	6	44	1.59
26689441--26689483	18	2.2	21	88	12	65	58	0	0	41	0.98
26690083--26690342	22	11.9	22	69	6	98	54	4	7	33	1.49
26690221--26690343	65	1.9	66	81	5	151	55	1	8	34	1.41
26690234--26690340	11	9.8	11	69	6	74	56	1	8	33	1.40
26690676--26690729	22	2.3	22	78	9	54	48	1	12	37	1.53
26690797--26691189	22	17.9	22	71	9	237	51	6	7	34	1.57
26690797--26691301	44	11.5	43	72	8	234	49	6	8	35	1.60
26690797--26691288	66	7.5	66	72	8	275	49	6	8	34	1.59
26691171--26691297	65	1.9	66	81	7	152	44	5	12	37	1.66
26691213--26691297	22	3.9	22	81	6	109	43	3	10	42	1.56
26691240--26691333	22	4.3	21	77	9	73	43	4	10	41	1.59
26691204--26691331	66	1.9	67	84	10	174	43	3	10	41	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26691215--26691333	44	2.7	43	83	8	143	42	4	10	42	1.59
26691371--26691430	22	2.7	22	82	7	68	43	6	5	45	1.52
26691395--26691490	11	8.9	10	71	14	66	48	4	5	41	1.44
26691395--26691462	32	2.1	32	97	0	127	48	1	5	44	1.36
26691327--26691503	76	2.4	74	78	9	187	45	5	7	42	1.54
26691422--26691567	22	6.7	22	78	5	100	47	4	8	39	1.55
26691429--26691547	44	2.7	44	80	2	132	46	5	7	40	1.57
26691844--26691922	22	3.5	22	81	5	88	46	6	10	36	1.63
26691819--26691907	45	2.0	46	84	2	117	47	6	10	35	1.64
26691844--26691897	23	2.4	23	87	3	83	46	7	9	37	1.64
26692076--26692216	22	6.4	22	81	4	124	49	7	4	39	1.50
26692077--26692203	66	1.9	66	82	6	159	48	7	4	39	1.53
26692080--26692218	66	2.1	66	80	7	149	49	7	3	39	1.48
26697385--26698942	584	2.7	577	81	7	1649	31	15	24	28	1.96
26698879--26699062	61	3.0	61	83	0	242	27	17	29	25	1.97
26699092--26699168	25	3.0	25	94	1	127	32	19	36	11	1.88
26700266--26700611	172	2.0	172	93	0	593	36	16	17	29	1.91
26710999--26711041	19	2.4	18	82	17	54	9	4	2	83	0.87
26711602--26711626	11	2.3	11	100	0	50	64	0	16	20	1.30
26715077--26715188	46	2.4	47	86	5	147	25	10	7	57	1.58
26715548--26715584	18	2.0	20	89	10	60	43	8	0	48	1.32
26715775--26716008	81	2.9	79	89	6	380	46	5	3	45	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26716801--26716852	15	3.1	16	83	16	61	25	3	0	71	1.03
26716801--26716847	24	1.9	25	86	4	69	23	4	0	72	1.02
26716802--26716853	20	2.5	21	81	3	61	25	5	0	69	1.10
26723532--26723601	16	4.4	16	72	13	63	62	7	0	30	1.21
26723551--26723618	33	2.1	32	86	8	93	57	4	0	38	1.19
26732200--26732238	18	2.3	16	82	8	51	74	0	23	2	0.94
26732603--26732647	17	2.7	16	78	21	56	73	2	17	6	1.15
26732906--26732945	7	5.7	7	81	0	53	82	2	15	0	0.77
26732905--26732943	21	1.9	20	94	5	69	79	5	15	0	0.90
26734117--26734355	66	3.6	65	77	6	176	24	17	12	45	1.83
26734531--26734638	33	3.3	33	67	7	94	23	20	9	47	1.79
26734659--26734774	34	3.5	32	77	5	124	23	16	12	48	1.79
26736669--26736709	19	2.2	20	86	8	59	41	0	4	53	1.22
26738436--26738483	21	2.2	22	78	10	55	75	0	22	2	0.91
26738631--26738674	19	2.3	19	92	0	70	31	20	15	31	1.94
26740575--26740613	18	2.1	19	85	4	53	51	5	5	38	1.46
26742725--26742765	18	2.5	16	85	14	57	24	2	14	58	1.49
26746078--26746123	19	2.4	19	96	0	83	43	4	21	30	1.72
26746607--26746652	17	2.7	18	80	10	51	82	4	13	0	0.81
26751068--26751116	3	16.3	3	100	0	98	32	0	0	67	0.91
26751585--26751628	12	3.8	12	78	3	54	20	0	15	63	1.31
26751582--26751624	11	3.8	11	78	6	50	23	0	13	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26760044--26760099	27	2.1	27	96	0	103	41	12	12	33	1.81
26762408--26762438	16	1.9	16	93	0	53	67	12	0	19	1.22
26765254--26765324	25	2.8	24	75	8	70	19	15	18	46	1.84
26766024--26766133	50	2.2	50	95	0	193	23	15	10	50	1.76
26766927--26766974	22	2.3	20	80	19	55	20	6	4	68	1.28
26768918--26769494	178	3.2	177	78	5	533	19	20	13	46	1.84
26768900--26769495	89	6.7	89	75	7	411	18	20	14	46	1.84
26768907--26769393	267	1.8	267	81	5	608	18	20	14	45	1.84
26768899--26769495	267	2.2	267	77	5	607	18	20	14	46	1.84
26769909--26769973	9	6.8	10	85	15	77	27	0	0	72	0.85
26769913--26769973	12	4.9	13	88	11	53	27	0	0	72	0.85
26769935--26769972	3	12.7	3	100	0	76	31	0	0	68	0.90
26770432--26770489	10	5.4	11	85	6	75	25	3	17	53	1.59
26770435--26770485	21	2.4	21	83	6	68	25	3	13	56	1.54
26770434--26770495	21	3.0	21	75	13	65	22	3	16	58	1.52
26770891--26770938	19	2.5	19	78	18	55	20	0	4	75	0.97
26772243--26772292	22	2.3	22	92	0	82	36	12	10	42	1.76
26773615--26773879	130	2.0	130	95	0	476	35	12	14	36	1.84
26775358--26775670	132	2.4	134	83	2	391	46	9	11	32	1.73
26780161--26780212	6	8.8	6	87	4	52	34	3	5	55	1.42
26780157--26780212	29	1.9	29	88	0	85	32	3	5	58	1.37
26780162--26780206	23	2.0	23	86	0	63	33	2	6	57	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26780157--26780219	18	3.6	17	78	6	63	31	4	4	58	1.39
26781882--26781946	18	3.1	23	64	30	54	36	3	7	52	1.46
26781805--26781946	40	3.7	37	77	10	119	35	4	8	52	1.51
26781875--26781952	20	3.9	20	73	6	77	37	3	7	51	1.49
26781968--26781998	14	2.2	14	94	0	53	25	3	16	54	1.56
26782014--26782054	10	4.1	10	84	12	57	31	2	17	48	1.60
26782325--26782422	49	2.0	49	95	0	178	41	17	18	22	1.90
26788287--26788485	84	2.4	84	76	9	208	35	17	15	31	1.91
26788449--26788828	209	1.8	209	83	4	507	36	16	15	32	1.90
26788468--26788832	104	3.5	103	80	3	381	36	16	14	32	1.89
26788961--26789199	122	2.0	121	81	5	286	36	12	14	36	1.84
26788915--26789202	41	7.1	41	74	7	196	37	11	14	36	1.83
26789535--26789589	26	2.1	26	86	0	74	30	14	16	38	1.89
26790763--26790823	20	3.1	20	73	17	56	6	13	1	78	1.01
26791199--26791267	26	2.7	24	74	14	59	7	15	1	75	1.09
26791185--26791255	33	2.2	33	80	10	83	5	16	1	76	1.05
26791733--26791773	12	3.1	14	80	16	52	4	12	0	82	0.81
26791742--26791804	27	2.3	27	81	5	74	4	15	0	79	0.90
26792398--26792449	16	3.3	16	75	19	56	0	25	0	75	0.81
26805472--26805515	23	2.0	23	90	4	72	75	2	22	0	0.92
26811706--26811785	22	3.6	22	68	15	58	36	23	11	28	1.89
26811726--26811812	22	4.0	22	76	8	79	31	25	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26812143--26812192	22	2.3	22	89	0	73	44	14	6	36	1.69
26812097--26812223	66	1.9	66	80	3	148	42	18	7	30	1.79
26812552--26812608	29	2.0	29	82	6	71	28	3	8	59	1.44
26814278--26814409	39	3.4	38	80	10	142	34	4	9	52	1.54
26814277--26814390	59	1.9	59	92	0	192	35	4	8	51	1.53
26814285--26814373	20	4.6	20	80	9	112	38	4	7	49	1.52
26814278--26814409	19	6.8	20	78	10	114	34	4	9	52	1.54
26814466--26814510	13	3.2	13	80	17	54	33	8	13	44	1.75
26829588--26829675	22	3.9	22	72	19	74	35	19	11	34	1.87
26829642--26829691	22	2.3	22	86	6	66	42	14	8	36	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195