genome.fa.s112.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  28  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6364836--6364878	12	3.6	12	84	9	52	23	2	0	74	0.93
6364932--6365113	91	2.0	90	87	3	258	41	6	10	41	1.64
6364989--6365057	33	2.1	33	91	0	111	40	7	4	47	1.51
6364998--6365052	16	3.4	16	75	5	56	50	7	3	38	1.48
6365022--6365261	57	4.2	57	81	8	272	43	5	11	39	1.65
6370389--6370436	20	2.3	20	85	7	60	27	2	4	66	1.21
6374495--6374539	23	2.0	23	86	4	65	17	8	8	64	1.47
6381731--6381887	75	2.1	75	93	1	271	36	12	29	21	1.90
6383158--6383202	14	3.2	14	81	6	56	37	0	2	60	1.09
6384172--6384245	36	2.1	36	86	0	103	48	10	4	36	1.57
6386632--6386835	108	1.9	110	82	6	263	28	8	8	53	1.61
6386735--6386836	51	1.9	53	82	5	127	27	8	7	55	1.58
6387118--6387168	4	12.2	4	80	15	59	74	3	0	21	0.98
6387118--6387165	25	1.9	25	95	0	87	75	4	0	20	0.97
6387117--6387168	17	3.1	18	81	13	65	75	3	0	21	0.97
6387863--6387897	9	4.0	9	88	7	54	20	2	0	77	0.90
6387863--6387895	17	1.9	17	93	0	57	18	3	0	78	0.87
6388092--6388218	45	2.8	45	83	7	157	42	14	12	29	1.83
6388137--6388238	45	2.3	45	83	3	118	43	15	10	30	1.81
6388184--6388403	41	5.4	41	80	7	223	45	17	11	25	1.82
6388183--6388403	79	2.7	79	81	6	237	45	17	11	26	1.82
6388650--6388853	107	1.9	112	87	5	310	35	12	12	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6388878--6388984	33	3.2	33	83	2	133	39	13	8	39	1.74
6389003--6389156	21	6.8	21	73	15	119	36	14	9	38	1.80
6389052--6389093	13	3.3	13	77	16	52	35	11	11	40	1.79
6389003--6389158	46	3.4	46	86	0	222	36	14	10	38	1.81
6390259--6390325	20	3.4	20	80	17	70	7	17	0	74	1.04
6390283--6390380	14	6.4	15	74	23	57	9	15	0	75	1.04
6390285--6390404	25	4.8	26	69	20	69	8	16	0	75	1.04
6390281--6390391	19	5.9	18	70	17	57	8	16	0	75	1.02
6390301--6390413	8	14.0	8	72	11	61	7	16	0	75	1.07
6395071--6395430	187	1.9	188	80	8	421	38	8	4	48	1.54
6396656--6396699	17	2.7	16	82	3	52	43	2	0	54	1.12
6396812--6396836	13	1.9	13	100	0	50	60	0	8	32	1.26
6398860--6398916	30	1.9	30	86	13	82	45	3	1	49	1.29
6398860--6398920	32	2.0	30	84	12	79	47	3	1	47	1.28
6399199--6399263	33	2.0	33	87	6	96	50	1	1	46	1.20
6399199--6399263	16	3.9	16	80	13	78	50	1	1	46	1.20
6414523--6414561	20	2.0	20	84	0	51	0	28	33	38	1.57
6416746--6416772	13	2.1	13	100	0	54	55	14	0	29	1.40
6426695--6426737	19	2.3	19	84	11	54	23	0	0	76	0.78
6432796--6432836	21	1.9	22	90	5	66	63	0	26	9	1.25
6435505--6435588	26	3.1	27	74	6	80	33	5	22	38	1.79
6436369--6436449	28	2.9	28	79	3	101	35	4	20	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6439127--6439159	16	2.1	16	94	0	57	39	3	18	39	1.66
6441470--6441494	12	2.1	12	100	0	50	68	8	8	16	1.38
6444606--6444656	22	2.3	22	79	0	57	76	0	9	13	1.02
6445707--6445800	44	2.1	45	84	2	118	31	7	18	42	1.78
6446172--6446203	2	16.0	2	100	0	64	50	0	0	50	1.00
6446767--6446844	24	3.5	22	77	16	65	28	1	6	64	1.26
6449425--6449474	27	1.9	26	88	8	75	70	6	14	10	1.33
6466398--6466436	15	2.6	15	79	0	51	46	0	10	43	1.37
6468043--6468069	9	3.0	9	100	0	54	66	0	22	11	1.22
6468269--6468305	2	18.5	2	100	0	74	0	48	0	51	1.00
6471338--6471394	21	2.8	21	74	12	55	42	5	36	15	1.70
6475532--6475559	2	14.0	2	100	0	56	50	0	0	50	1.00
6476138--6476203	26	2.8	23	78	14	80	53	1	1	43	1.19
6476147--6476202	26	2.2	26	90	3	87	57	1	1	39	1.20
6485875--6485922	5	9.0	5	82	17	53	20	0	0	79	0.74
6485878--6485909	6	5.7	6	96	3	50	15	0	0	84	0.63
6485878--6485922	16	2.8	15	83	12	54	20	0	0	80	0.72
6485875--6485919	17	2.8	17	83	12	51	20	0	0	80	0.72
6489743--6489801	26	2.2	27	81	3	66	52	1	1	44	1.21
6489914--6489986	37	1.9	38	91	2	121	46	8	16	28	1.76
6500000--6500450	152	3.0	152	95	1	805	38	17	14	29	1.90
6500439--6500507	13	5.0	13	69	17	50	81	5	5	7	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6500779--6500827	20	2.5	20	93	0	80	24	26	26	22	2.00
6500969--6501022	25	2.2	25	90	6	83	31	18	9	40	1.82
6501388--6501496	14	7.2	14	66	20	51	67	3	0	27	1.13
6501403--6501536	3	43.3	3	68	26	52	65	3	1	29	1.18
6501389--6501459	21	3.3	22	77	16	69	70	1	0	28	0.96
6501390--6501440	12	4.6	12	81	18	58	72	0	0	27	0.85
6501388--6501529	48	3.0	47	72	19	136	66	3	1	28	1.16
6501729--6501840	1	112.0	1	72	0	62	7	0	8	83	0.80
6501721--6501835	9	12.7	9	90	6	162	7	0	9	82	0.84
6501847--6502334	41	12.0	41	89	5	692	35	22	18	23	1.95
6501847--6502334	81	6.0	80	88	7	698	35	22	18	23	1.95
6501847--6502334	122	4.0	122	94	2	786	35	22	18	23	1.95
6503553--6503592	6	7.0	6	78	21	50	0	17	0	82	0.67
6503526--6503591	8	8.9	7	82	11	62	4	15	0	80	0.87
6507233--6507711	156	3.0	160	93	1	786	39	17	14	28	1.89
6507742--6507770	1	29.0	1	100	0	58	100	0	0	0	0.00
6508527--6508560	11	2.9	12	86	8	52	79	0	0	20	0.73
6508787--6508811	13	1.9	13	100	0	50	88	0	0	12	0.53
6508847--6508911	20	3.2	20	91	0	94	20	30	32	16	1.95
6514402--6514467	33	2.0	33	96	0	123	40	3	10	45	1.54
6519764--6519798	18	2.1	17	89	10	54	54	0	5	40	1.24
6528814--6528851	3	13.3	3	94	5	62	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6533908--6533977	28	2.4	29	84	15	92	40	1	0	58	1.07
6534797--6534842	22	2.1	22	92	4	76	54	0	0	45	0.99
6534835--6534882	14	3.4	14	77	13	53	58	4	0	37	1.18
6535199--6535230	3	10.7	3	93	0	55	0	37	0	62	0.95
6541890--6541939	2	25.0	2	91	0	82	4	0	46	50	1.20
6542254--6542329	38	2.0	38	100	0	152	18	21	7	52	1.70
6543066--6543109	22	2.0	22	100	0	88	18	9	13	59	1.60
6544494--6544538	20	2.2	20	84	8	54	71	6	0	22	1.09
6548691--6549004	163	1.9	163	96	0	574	39	10	6	43	1.65
6551362--6551397	17	2.1	17	89	0	54	61	11	0	27	1.30
6552773--6552810	6	6.5	6	81	6	51	81	2	0	15	0.80
6553658--6553700	17	2.4	17	84	7	50	67	0	4	27	1.10
6553668--6553702	17	2.0	18	94	5	63	62	0	2	34	1.10
6553739--6553802	28	2.3	27	81	7	76	70	0	0	29	0.88
6553738--6553796	27	2.2	26	85	11	84	69	0	0	30	0.89
6553854--6553963	18	5.8	19	72	17	61	65	4	3	26	1.28
6553908--6553971	9	7.4	8	77	16	65	73	3	0	23	0.97
6553876--6553971	36	2.6	36	81	8	104	68	5	1	25	1.16
6553896--6553971	26	2.8	26	78	7	82	71	3	1	23	1.11
6553923--6553964	19	2.2	19	87	8	59	76	2	0	21	0.90
6559385--6559674	58	5.0	57	89	5	422	36	7	5	49	1.55
6559385--6559674	117	2.5	113	90	6	438	36	7	5	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6559692--6559735	11	4.0	11	84	0	61	84	2	2	11	0.81
6559695--6559742	11	4.4	11	85	12	55	81	2	4	12	0.93
6559695--6559757	17	3.8	17	76	15	60	77	1	4	15	1.01
6559694--6559735	22	1.9	22	90	9	68	83	2	2	11	0.84
6560716--6560829	10	11.9	10	67	25	61	65	2	1	29	1.16
6560721--6560776	19	2.8	21	81	13	64	62	3	0	33	1.12
6560718--6560780	22	2.9	22	79	11	67	63	3	0	33	1.10
6560789--6560842	24	2.2	24	80	6	65	70	3	1	24	1.13
6561030--6561085	10	5.6	10	85	6	62	1	1	8	87	0.69
6561092--6561430	41	8.1	41	88	2	489	36	23	16	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195