genome.fa.s112.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  65  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12838177--12838223	6	7.8	6	92	0	76	2	2	12	82	0.84
12838104--12838236	19	6.9	18	73	22	94	6	2	8	83	0.88
12838385--12838541	70	2.2	70	80	4	174	42	8	24	24	1.82
12838491--12838867	70	5.4	70	74	8	286	42	11	23	22	1.86
12838493--12838867	140	2.7	137	76	4	365	42	11	23	22	1.86
12838687--12838866	35	5.1	36	68	10	106	43	12	22	21	1.86
12838992--12839086	34	2.8	33	79	6	111	33	16	17	31	1.93
12839158--12839546	34	11.5	34	72	7	204	30	15	18	35	1.92
12839165--12839376	102	2.1	102	79	7	225	32	16	17	33	1.93
12839256--12839583	67	4.9	65	73	8	196	31	16	17	34	1.92
12839113--12839546	236	1.8	236	81	2	541	30	15	18	35	1.92
12839367--12839750	201	1.9	201	80	5	445	29	14	20	35	1.92
12839428--12839844	168	2.5	167	77	6	418	29	14	21	35	1.93
12839628--12840196	34	17.0	34	69	9	157	32	16	18	33	1.93
12839488--12840226	134	5.5	135	72	9	505	30	16	19	33	1.93
12839731--12840447	100	7.2	100	72	10	312	31	16	18	32	1.94
12839903--12840096	67	2.9	67	80	9	207	35	15	15	33	1.90
12839496--12840196	268	2.6	270	78	5	726	31	15	18	33	1.93
12840038--12840473	65	6.6	66	73	6	312	31	17	19	32	1.95
12839000--12840451	33	43.7	33	70	10	604	31	16	18	33	1.93
12840652--12840722	22	3.2	22	73	0	61	23	21	19	35	1.96
12840715--12840870	85	1.8	85	84	0	213	30	16	19	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12840799--12840910	32	3.5	31	79	7	118	31	14	19	34	1.92
12849696--12850365	144	4.7	143	85	5	754	40	13	14	31	1.84
12867631--12868428	129	6.2	129	77	5	712	35	8	17	38	1.81
12867631--12868428	130	6.2	130	76	4	689	35	8	17	38	1.81
12868349--12868508	81	2.0	80	82	6	198	40	1	18	40	1.58
12868426--12868774	129	2.7	127	77	6	369	36	7	17	38	1.77
12869021--12869313	128	2.3	129	81	3	338	35	8	18	37	1.81
12868718--12869334	310	2.0	310	80	3	697	37	7	17	36	1.79
12869665--12869796	66	2.0	66	91	2	212	35	12	15	36	1.85
12870374--12871367	128	7.8	124	70	13	368	34	8	16	40	1.78
12870132--12873692	260	13.8	253	73	11	1537	35	8	17	38	1.80
12870136--12874040	129	30.3	130	73	8	2212	35	8	17	38	1.80
12871605--12871909	131	2.3	129	81	6	346	38	7	16	38	1.76
12871942--12873714	130	13.7	131	73	9	630	35	8	18	38	1.80
12874484--12875432	129	7.4	129	71	10	531	35	7	16	39	1.78
12874484--12875415	259	3.6	254	76	9	834	36	8	16	39	1.78
12874479--12875834	130	10.4	129	70	10	675	35	8	16	38	1.80
12876165--12877413	130	9.4	128	69	14	460	36	8	16	38	1.78
12877324--12877669	184	1.9	184	85	2	489	34	6	17	40	1.76
12877663--12878494	129	6.4	128	73	8	539	35	8	17	38	1.80
12879751--12880764	129	7.9	129	73	8	695	37	8	16	37	1.79
12879961--12880762	128	6.2	128	71	10	357	37	7	16	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12881679--12882123	170	2.6	170	83	7	532	36	12	9	41	1.77
12882210--12882294	23	3.6	23	74	13	73	74	9	3	12	1.19
12882857--12883419	42	13.4	42	87	3	681	42	21	13	22	1.87
12882857--12883420	83	6.7	83	85	5	713	42	21	13	22	1.87
12883695--12883870	79	2.2	79	85	3	228	30	21	12	36	1.90
12883755--12883810	21	2.7	21	91	2	87	30	17	12	39	1.87
12883833--12883890	21	2.7	21	81	7	73	39	20	5	34	1.75
12885048--12885088	10	4.3	10	84	12	59	4	12	0	82	0.81
12885010--12885090	8	9.6	8	77	15	74	9	13	0	76	1.02
12885418--12885465	24	2.0	24	84	8	62	4	22	2	70	1.15
12886094--12886128	17	2.1	17	94	0	61	17	28	11	42	1.83
12888848--12888894	24	2.0	25	84	12	64	34	17	23	25	1.96
12889612--12889646	10	3.5	10	96	0	61	14	0	2	82	0.77
12889846--12889933	25	3.6	23	78	9	86	77	7	3	11	1.10
12890420--12891944	129	11.8	129	72	8	840	36	8	16	37	1.79
12890540--12891682	130	8.9	129	73	10	700	36	8	17	38	1.79
12890618--12891109	257	1.9	257	79	6	543	35	8	17	38	1.81
12890420--12891689	259	4.9	258	74	9	873	36	8	16	38	1.79
12892160--12893620	129	11.3	128	72	9	632	36	7	16	39	1.78
12892296--12893066	388	2.0	386	82	5	948	36	6	17	38	1.77
12892166--12893041	258	3.4	257	76	6	790	36	7	17	38	1.78
12893701--12894237	131	4.1	129	74	8	442	37	7	17	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12894267--12895221	129	7.5	121	71	14	427	35	8	16	39	1.79
12894495--12895221	129	5.6	129	75	8	511	35	8	16	40	1.79
12894495--12895101	258	2.4	258	81	6	658	34	8	15	40	1.78
12895139--12895321	100	1.8	100	82	2	233	32	9	17	40	1.81
12895219--12897463	129	17.4	129	70	10	967	35	8	17	39	1.79
12897354--12897574	109	2.0	109	98	0	424	33	6	19	40	1.78
12897479--12898970	130	11.5	127	74	9	782	36	7	17	39	1.77
12897479--12898928	259	5.6	259	74	9	720	36	7	17	39	1.77
12899500--12899929	129	3.3	129	78	7	419	34	9	16	40	1.81
12900005--12900973	258	3.7	258	76	9	764	37	7	16	39	1.76
12900005--12901014	130	7.8	129	75	9	763	37	7	16	39	1.76
12900045--12900972	387	2.4	385	80	5	992	37	7	16	39	1.76
12901951--12902541	129	4.6	130	77	4	493	36	8	17	37	1.80
12903044--12903404	134	2.8	129	75	11	304	37	8	16	38	1.78
12904898--12905022	58	2.1	59	89	1	189	36	20	8	35	1.83
12914527--12914605	39	2.0	39	82	0	95	18	26	21	32	1.97
12915473--12915511	20	2.0	20	94	0	69	82	0	17	0	0.68
12915473--12915530	23	2.8	19	80	17	55	77	0	17	5	0.94
12916471--12916623	50	3.1	51	85	5	170	35	13	13	36	1.85
12921718--12921992	151	1.8	151	87	0	415	36	18	15	29	1.92
12921728--12922043	151	2.1	151	83	0	389	35	18	14	31	1.91
12923068--12923414	145	2.4	146	81	6	404	40	11	12	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12923068--12923419	144	2.4	143	80	5	361	40	11	12	34	1.80
12923976--12925210	34	36.6	34	71	13	609	49	12	17	20	1.78
12923967--12925147	69	17.5	67	74	10	713	49	12	17	20	1.78
12924341--12924404	28	2.3	28	86	10	87	53	17	12	17	1.73
12924214--12924705	164	3.0	164	88	4	629	51	12	15	20	1.75
12924186--12924966	237	3.3	237	78	12	573	50	12	16	20	1.77
12925494--12925537	18	2.4	18	88	0	61	40	11	25	22	1.87
12925650--12925753	41	2.5	41	83	6	113	35	15	14	34	1.88
12925841--12926037	65	3.0	64	83	3	234	28	18	18	34	1.95
12926286--12926331	20	2.3	19	85	7	56	4	15	0	80	0.86
12926286--12926334	21	2.4	20	83	6	62	6	16	0	77	0.96
12926302--12926331	10	3.0	10	90	0	51	3	10	0	86	0.67
12926546--12926599	26	2.1	26	82	6	65	31	12	14	40	1.84
12926612--12926760	41	3.6	41	83	7	176	34	15	21	28	1.94
12926610--12926775	41	4.0	41	80	7	167	33	15	20	30	1.93
12927855--12927888	15	2.3	15	90	5	52	0	2	11	85	0.71
12928233--12928314	11	7.6	10	69	23	51	2	20	0	76	0.89
12928265--12928313	6	8.5	6	76	15	50	2	16	0	81	0.78
12928276--12928319	8	5.1	8	84	15	61	0	15	0	84	0.63
12928270--12928319	16	3.1	16	83	13	66	0	16	0	84	0.63
12928276--12928319	17	2.5	18	88	3	72	0	15	0	84	0.63
12933239--12933618	151	2.5	151	80	2	413	35	19	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12934277--12934326	19	2.4	21	83	9	59	2	20	6	72	1.16
12934813--12935079	145	1.8	144	86	0	381	39	14	13	32	1.86
12935297--12935321	13	1.9	13	100	0	50	32	12	16	40	1.84
12936909--12936941	3	11.0	3	93	0	57	63	0	3	33	1.10
12937739--12938382	337	1.9	337	98	0	1252	34	17	14	33	1.90
12939667--12939695	13	2.1	14	93	6	51	58	0	0	41	0.98
12939817--12939855	2	19.5	2	89	0	60	48	0	5	46	1.24
12940892--12940927	2	18.0	2	100	0	72	50	0	0	50	1.00
12941594--12941624	2	15.0	2	93	6	53	48	3	0	48	1.17
12944274--12944316	9	4.6	9	83	11	50	32	2	4	60	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195