Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  2  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114075--114114
20
2.0
21
85
5
55
25
27
17
30
1.97
114440--114592
8
18.2
8
67
16
53
18
3
3
74
1.11
114486--114572
26
3.4
25
78
9
79
19
4
3
72
1.17
114698--114788
29
3.0
30
64
26
75
43
7
15
32
1.75
114607--114900
117
2.5
117
86
8
400
45
7
12
34
1.70
114615--114900
60
4.9
58
85
10
368
45
7
12
34
1.71
120012--120457
80
5.5
79
88
8
623
21
18
21
38
1.94
120012--120457
41
11.0
40
88
7
604
21
18
21
38
1.94
120019--120457
122
3.6
120
87
9
599
21
18
21
38
1.94
120465--120501
18
2.1
18
100
0
74
89
5
0
5
0.60
120693--120833
16
9.1
16
69
24
65
30
1
3
64
1.19
120693--120836
52
2.8
51
76
13
134
31
1
3
63
1.19
120703--120834
8
16.8
8
68
28
56
31
1
3
63
1.19
121761--121814
20
2.6
21
82
11
67
11
1
7
79
1.00
121810--121874
17
3.9
16
76
8
58
23
3
4
69
1.21
121866--121920
27
2.0
27
83
13
69
16
1
1
80
0.90
121780--121923
20
6.7
20
73
21
87
19
2
4
74
1.09
121957--122173
59
3.7
58
87
7
314
44
5
14
35
1.69
121957--122173
119
1.8
117
93
2
371
44
5
14
35
1.69
121957--122173
60
3.7
59
87
6
316
44
5
14
35
1.69
122754--122997
100
2.4
101
82
8
271
43
14
13
29
1.83
122957--123104
63
2.3
63
73
15
144
45
9
9
35
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123728--123778
16
3.2
16
77
5
59
54
7
1
35
1.40
123728--123786
31
1.9
31
89
0
91
50
8
5
35
1.55
126129--126177
20
2.5
20
83
9
66
34
0
4
61
1.15
126117--126372
91
2.8
88
76
13
245
43
3
3
49
1.36
133694--133731
2
19.0
2
100
0
76
50
0
0
50
1.00
134841--134873
16
2.1
16
88
5
50
12
18
0
69
1.18
135633--135674
18
2.3
18
87
0
57
16
50
4
28
1.66
149412--149447
2
18.0
2
100
0
72
50
0
0
50
1.00
151045--151109
11
5.8
11
75
10
69
26
53
9
10
1.65
152408--152538
15
8.7
15
71
16
69
49
25
0
24
1.55
152400--152538
45
3.1
44
80
9
138
49
25
1
23
1.58
152606--152663
31
1.9
30
82
10
73
44
25
1
27
1.64
154193--154394
65
3.2
61
74
15
167
42
10
9
37
1.72
159287--159367
28
2.8
29
71
12
78
51
1
3
43
1.27
163419--163444
2
13.0
2
100
0
52
50
0
0
50
1.00
166935--167140
104
2.0
104
97
0
385
31
19
16
33
1.94
171220--171257
20
1.9
20
94
0
67
28
13
21
36
1.91
174871--174919
22
2.2
22
96
0
89
30
26
18
24
1.98
177596--177655
29
2.1
29
87
6
86
55
1
3
40
1.27
186353--186413
31
2.0
31
96
0
113
18
6
4
70
1.27
186588--186625
19
2.0
20
94
5
69
26
2
7
63
1.35
187463--187492
13
2.3
13
94
0
51
46
0
3
50
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
187481--187529
21
2.3
22
80
16
59
55
2
0
42
1.11
187557--187626
21
3.7
20
74
20
69
47
1
2
48
1.25
192559--192608
25
2.0
25
96
0
91
32
22
16
30
1.95
193656--193814
61
2.6
61
82
7
182
36
15
18
30
1.91
193656--193827
60
2.8
61
79
9
201
37
16
16
29
1.91
193656--193877
60
3.7
60
75
11
186
36
15
15
31
1.90
193656--193875
120
1.8
120
81
6
275
36
15
15
31
1.89
196054--196078
12
2.1
12
100
0
50
28
8
16
48
1.74
196959--196991
3
11.0
3
100
0
66
33
0
0
66
0.92
202105--202129
12
2.1
12
100
0
50
52
8
0
40
1.31
208050--208075
4
6.5
4
100
0
52
76
0
23
0
0.78
218668--218714
16
2.8
17
81
12
60
38
2
0
59
1.09
220533--220578
21
2.2
21
92
3
76
52
0
0
47
1.00
220530--220581
21
2.7
19
80
13
70
50
0
0
50
1.00
220572--220616
17
2.8
16
84
15
58
62
0
0
37
0.96
223919--223957
19
2.1
19
85
9
53
38
0
10
51
1.36
224233--224280
8
6.0
8
92
0
60
50
37
0
12
1.41
224233--224262
4
7.5
4
92
0
51
50
30
0
20
1.49
224233--224278
12
3.8
12
88
0
65
50
36
0
13
1.41
225774--225800
3
9.0
3
100
0
54
33
0
0
66
0.92
230077--230101
13
1.9
13
100
0
50
24
0
0
76
0.80
230662--230702
2
20.5
2
100
0
82
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
234071--234118
25
2.0
24
87
4
69
33
14
20
31
1.93
236893--236922
5
6.2
5
92
7
53
40
0
0
60
0.97
239663--239688
4
6.5
4
100
0
52
23
0
0
76
0.78
246337--246363
10
2.7
10
100
0
54
11
14
11
62
1.53
247585--247616
2
16.0
2
100
0
64
50
0
0
50
1.00
251809--252204
197
2.0
197
98
0
765
30
20
15
33
1.93
255584--255616
2
16.5
2
100
0
66
51
0
48
0
1.00
258219--258291
38
1.9
38
94
0
128
30
19
20
30
1.97
260097--260129
16
2.1
16
100
0
66
30
6
6
57
1.47
267048--267096
2
24.5
2
91
0
80
48
2
0
48
1.12
284421--284456
2
18.0
2
100
0
72
50
0
0
50
1.00
286743--286781
19
2.1
19
85
0
51
43
0
12
43
1.42
294571--294603
2
16.5
2
93
0
57
48
3
0
48
1.17
295539--295569
2
15.5
2
100
0
62
51
48
0
0
1.00
304107--304131
12
2.1
12
100
0
50
48
16
20
16
1.82
310627--310661
17
2.1
17
100
0
70
54
34
0
11
1.37
310906--310936
11
2.8
11
95
0
53
51
32
0
16
1.44
311214--311279
25
2.6
26
78
7
82
18
31
10
39
1.85
311812--311965
52
3.0
51
80
5
168
29
18
6
45
1.74
311991--312033
22
2.0
22
90
0
68
48
27
0
23
1.51
312004--312033
11
2.7
11
89
0
51
46
26
0
26
1.53
312931--313045
52
2.2
52
85
0
158
33
20
5
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
313949--313982
16
2.1
17
89
10
54
2
8
5
82
0.93
318651--318691
14
2.8
15
85
3
57
0
17
4
78
0.93
318651--318693
15
2.9
15
86
3
61
0
16
4
79
0.90
319284--319329
17
2.6
18
89
3
67
10
8
4
76
1.15
329938--329965
2
14.0
2
100
0
56
50
0
0
50
1.00
334528--334561
2
17.0
2
100
0
68
50
0
0
50
1.00
349826--349915
33
2.7
32
83
8
92
45
0
1
53
1.07
350006--350045
12
3.4
11
83
16
53
27
2
0
70
1.01
350704--350748
19
2.4
19
85
10
58
57
0
2
40
1.11
354992--355020
14
2.1
14
100
0
58
41
6
6
44
1.58
357810--357970
61
2.7
60
80
9
197
47
9
5
37
1.59
363636--363968
64
5.2
64
71
11
214
35
9
9
45
1.68
366973--367045
16
4.6
16
71
6
58
45
8
4
42
1.53
379846--379890
22
2.1
21
83
4
54
51
2
0
46
1.13
379852--379906
28
2.0
28
85
7
76
56
1
0
41
1.10
383720--383963
126
1.9
127
85
5
341
37
11
13
37
1.80
400515--400544
12
2.6
11
90
10
51
10
16
56
16
1.66
401532--401564
2
16.5
2
100
0
66
48
0
51
0
1.00
404405--404509
30
3.6
29
79
15
117
35
13
4
46
1.64
404405--404472
29
2.3
28
83
14
84
36
16
2
44
1.63
409373--409414
12
3.5
12
81
12
59
66
0
0
33
0.92
409373--409414
16
2.3
20
84
15
56
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
409367--409424
24
2.4
25
85
8
93
63
0
0
36
0.94
410272--410304
16
2.0
17
88
5
50
39
0
3
57
1.14
424829--424862
15
2.3
15
89
0
50
44
14
5
35
1.70
441878--441905
2
14.0
2
100
0
56
0
50
0
50
1.00
452316--452540
112
2.0
112
98
0
432
33
18
26
21
1.96
468165--468201
2
18.5
2
94
0
65
45
0
0
54
1.00
475631--475663
12
2.5
14
90
9
52
69
0
9
21
1.15
481985--482021
15
2.5
15
90
0
56
89
0
10
0
0.49
481985--482021
16
2.2
17
90
4
58
89
0
10
0
0.49
492783--494136
676
2.0
676
100
0
2708
36
16
16
29
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195