genome.fa.s112.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  101  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18130636--18130670	4	8.8	4	87	12	54	77	0	0	22	0.78
18130639--18130667	13	2.2	13	100	0	58	79	0	0	20	0.74
18130557--18130670	21	5.4	21	69	20	69	71	2	4	21	1.17
18131514--18131561	18	2.5	20	83	13	64	68	4	6	20	1.28
18131628--18131678	15	3.4	16	79	10	56	58	5	0	35	1.22
18131937--18131984	1	48.0	1	78	0	51	0	0	10	89	0.48
18131939--18131984	21	2.2	21	92	3	76	0	0	10	89	0.50
18131937--18131978	12	3.5	12	84	9	59	0	0	9	90	0.45
18131992--18132365	42	9.0	41	93	1	568	35	21	18	23	1.96
18132307--18132431	66	1.9	66	91	3	207	39	17	19	24	1.92
18132265--18132473	108	1.9	108	94	1	366	37	19	19	23	1.94
18132223--18132514	150	2.0	149	94	0	512	37	19	19	23	1.94
18132373--18132521	42	3.6	41	92	6	232	36	20	18	24	1.95
18133735--18133785	27	1.9	26	88	4	75	3	17	0	78	0.90
18133735--18133785	7	7.1	7	78	8	50	3	17	0	78	0.90
18133780--18133815	18	2.1	17	90	10	56	5	13	2	77	1.05
18133861--18133941	25	3.2	25	100	0	162	24	23	17	34	1.96
18136774--18137008	116	2.0	116	98	0	452	31	15	17	34	1.92
18137872--18138226	59	6.0	58	84	7	450	34	12	7	45	1.70
18137875--18138224	119	3.0	117	86	7	449	34	12	7	46	1.69
18138229--18138374	9	16.4	9	70	22	71	72	2	4	19	1.15
18138233--18138275	22	2.0	22	90	9	70	74	0	9	16	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18138257--18138378	4	30.0	4	70	23	62	72	3	3	20	1.12
18138242--18138328	26	3.4	27	69	24	71	74	1	5	18	1.07
18138256--18138375	17	6.8	16	72	23	75	73	3	3	20	1.12
18138234--18138318	39	2.2	39	81	14	95	75	1	7	16	1.08
18138234--18138376	23	6.2	22	68	21	71	73	2	4	19	1.12
18138339--18138375	13	2.9	13	92	4	58	78	2	0	18	0.87
18138828--18138898	31	2.3	32	82	4	83	33	22	18	25	1.96
18139406--18139447	3	14.0	3	81	18	52	69	2	0	28	1.01
18139342--18139447	12	8.5	13	71	17	57	66	3	0	29	1.16
18139392--18139447	9	6.8	8	80	17	53	71	1	1	25	1.05
18139511--18139551	20	2.0	21	95	4	75	21	24	29	24	1.99
18141535--18141585	26	2.0	26	96	0	93	27	29	17	25	1.98
18140663--18145832	902	5.8	892	85	4	6519	25	24	24	25	2.00
18147407--18147459	26	2.0	26	100	0	106	26	26	20	26	1.99
18147433--18151562	865	4.7	865	87	4	5410	26	23	23	26	2.00
18149613--18149670	26	2.2	26	81	3	62	55	8	10	25	1.62
18151940--18151975	12	2.9	12	95	4	63	13	25	16	44	1.85
18152602--18152654	26	2.0	26	92	0	88	28	24	18	28	1.98
18153346--18153398	26	2.0	26	92	0	88	30	26	16	26	1.97
18154218--18154270	26	2.0	26	88	0	79	28	24	20	26	1.99
18155097--18155147	26	2.0	26	96	0	93	25	29	17	27	1.98
18156880--18156932	26	2.0	26	88	0	79	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18153336--18158617	880	6.0	877	84	6	5496	26	24	23	25	2.00
18157749--18157801	26	2.0	26	96	0	97	26	24	20	28	1.99
18160161--18160213	26	2.0	26	88	0	79	26	24	20	28	1.99
18158612--18160959	902	2.6	897	88	2	3413	27	24	22	25	2.00
18163379--18167681	721	6.0	720	91	2	6153	27	23	22	26	2.00
18166982--18167034	26	2.0	26	96	0	97	26	24	20	28	1.99
18167308--18167335	12	2.3	12	100	0	56	32	14	28	25	1.94
18167132--18168350	608	2.0	610	89	3	1867	28	23	22	25	1.99
18167798--18171193	891	3.8	882	85	5	4275	25	24	23	26	2.00
18175050--18175089	20	2.0	20	95	0	71	25	20	17	37	1.94
18177613--18177668	26	2.2	26	96	0	103	28	23	19	28	1.98
18178516--18178571	26	2.2	26	93	0	94	28	25	19	26	1.99
18179405--18179460	26	2.2	26	90	0	85	33	23	17	25	1.96
18180281--18180336	26	2.2	26	93	0	94	28	23	21	26	1.99
18181167--18181243	26	3.0	26	88	0	109	28	23	18	29	1.97
18180422--18191301	894	11.9	903	80	10	5764	25	25	24	25	2.00
18182089--18182141	26	2.0	26	92	0	88	26	22	20	30	1.98
18181930--18182354	184	2.3	185	85	2	559	22	28	27	21	1.99
18182274--18182324	26	2.0	26	96	0	93	29	27	17	25	1.98
18183172--18183224	26	2.0	26	92	0	88	26	22	20	30	1.98
18184976--18185028	26	2.0	26	92	0	88	26	28	18	26	1.98
18185870--18185922	26	2.0	26	88	0	79	22	30	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18182115--18193934	895	13.2	895	87	3	15564	25	24	24	25	2.00
18186765--18186817	26	2.0	26	96	0	97	24	28	20	26	1.99
18187660--18187710	26	2.0	26	92	0	84	25	29	15	29	1.96
18188352--18188376	12	2.1	12	100	0	50	0	64	28	8	1.22
18188554--18188606	26	2.0	26	88	0	79	26	24	18	30	1.98
18189457--18189507	26	2.0	26	92	0	84	25	29	15	29	1.96
18192114--18192166	26	2.0	26	100	0	106	26	26	20	26	1.99
18191406--18193934	899	2.8	894	86	3	3492	26	24	23	25	2.00
18195187--18195238	26	2.0	26	96	0	95	28	25	19	26	1.98
18196790--18196840	25	2.0	25	92	0	84	27	23	21	27	1.99
18197691--18197743	26	2.0	26	88	0	79	28	22	20	28	1.99
18196062--18199230	882	3.6	873	86	4	4050	27	24	23	25	2.00
18199270--18199345	26	3.0	26	88	1	118	28	25	18	27	1.98
18200195--18200272	27	2.9	27	88	1	113	30	25	16	26	1.97
18202948--18203823	437	2.0	438	92	0	1459	32	23	17	26	1.96
18205476--18205528	26	2.0	26	92	0	88	30	26	16	26	1.97
18206375--18206427	26	2.0	26	96	0	97	28	26	18	26	1.98
18204983--18214705	899	10.9	897	84	5	11212	25	24	24	25	2.00
18208142--18208193	26	2.0	26	96	0	95	28	25	19	26	1.98
18205502--18214705	893	10.3	875	82	7	9489	25	24	24	25	2.00
18214397--18214446	26	1.9	26	95	0	91	28	24	20	28	1.99
18211691--18214705	908	3.3	889	83	5	3649	25	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18218363--18218414	26	2.0	26	84	0	68	30	17	21	30	1.96
18220804--18220880	26	3.0	25	90	7	118	28	16	25	28	1.97
18221741--18221816	26	3.0	26	94	1	127	27	18	25	28	1.98
18223354--18223406	26	2.0	26	85	0	70	30	20	22	26	1.98
18221856--18225187	903	3.7	878	88	3	4492	25	23	24	26	2.00
18224257--18224309	26	2.0	26	96	0	97	28	20	24	26	1.99
18225874--18225925	26	2.0	26	92	0	86	28	19	23	28	1.98
18227380--18229838	873	2.8	870	84	3	3220	25	22	24	27	2.00
18230690--18230742	26	2.0	26	85	0	70	24	18	24	32	1.97
18231580--18231656	26	3.0	26	96	0	136	27	20	25	25	1.99
18233374--18233426	26	2.0	26	92	0	88	24	20	24	30	1.99
18230646--18235106	885	5.0	881	82	7	4963	25	23	24	25	2.00
18235825--18236186	159	2.3	158	82	0	409	22	28	27	20	1.99
18236847--18236899	26	2.0	26	92	0	88	28	22	22	26	1.99
18235962--18245776	905	11.1	875	84	4	11477	25	24	24	25	2.00
18239488--18239537	26	1.9	26	91	0	82	26	22	28	24	1.99
18240390--18240442	26	2.0	26	92	0	88	28	18	22	30	1.98
18241295--18241347	26	2.0	26	100	0	106	26	20	26	26	1.99
18242952--18242983	11	2.9	11	100	0	64	18	37	25	18	1.94
18243048--18243100	26	2.0	26	96	0	97	26	18	26	28	1.98
18243949--18244001	26	2.0	26	96	0	97	26	18	26	28	1.98
18242181--18245904	896	4.1	897	88	2	5045	25	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18246341--18246391	26	2.0	26	96	0	93	29	17	23	29	1.97
18248843--18248893	26	2.0	26	100	0	102	27	21	27	23	1.99
18247209--18253372	894	6.9	898	85	3	7933	25	24	24	25	2.00
18249734--18249786	26	2.0	26	96	0	97	26	15	26	32	1.95
18250631--18250680	26	1.9	26	91	0	82	26	22	28	24	1.99
18251532--18251584	26	2.0	26	88	0	79	28	20	24	26	1.99
18247209--18253372	899	6.9	902	85	3	7998	25	24	24	25	2.00
18252608--18254100	710	2.1	710	88	3	2174	26	23	23	26	2.00
18254186--18257851	719	5.1	716	85	4	4614	26	23	23	26	2.00
18257025--18257091	32	2.1	32	86	5	91	22	32	29	14	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195