genome.fa.s112.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  74  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14589110--14589161	26	2.0	25	85	3	68	28	19	21	30	1.97
14590620--14590672	26	2.0	26	100	0	106	26	20	26	26	1.99
14592396--14592448	26	2.0	26	92	0	88	28	20	20	30	1.98
14589909--14595996	903	6.8	899	86	3	8014	25	24	24	25	2.00
14593299--14593351	26	2.0	26	92	0	88	26	18	24	30	1.98
14597585--14597637	26	2.0	26	89	7	81	28	20	24	26	1.99
14595972--14598506	900	2.8	897	89	1	3760	25	23	24	25	2.00
14600049--14600101	26	2.0	26	92	0	88	28	15	26	30	1.96
14598460--14605867	893	8.2	893	77	10	6491	25	23	25	25	2.00
14600953--14601005	26	2.0	26	88	0	79	24	16	28	30	1.97
14602840--14602890	26	2.0	26	100	0	102	27	15	27	29	1.96
14603750--14603802	26	2.0	26	92	0	88	28	18	24	28	1.98
14602231--14605867	905	4.0	900	85	5	4488	24	24	25	25	2.00
14605554--14605606	26	2.0	26	92	0	88	26	18	24	30	1.98
14605984--14606036	25	2.1	26	92	3	90	30	18	22	28	1.98
14606890--14606939	25	2.0	25	85	11	68	30	22	26	22	1.99
14607763--14607815	26	2.0	26	92	0	88	30	20	22	26	1.98
14610019--14610071	26	2.0	26	92	0	88	28	18	24	28	1.98
14610920--14610972	26	2.0	26	92	0	88	28	18	24	28	1.98
14611826--14611878	26	2.0	26	88	0	79	30	18	22	28	1.98
14609155--14614587	903	6.0	903	85	2	7086	25	24	24	25	2.00
14612729--14612781	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14613615--14613667	26	2.0	26	88	0	79	30	18	22	28	1.98
14614512--14614563	25	2.0	26	85	3	70	26	19	26	26	1.99
14615217--14615266	25	2.0	26	88	4	75	30	18	22	30	1.97
14614968--14617728	878	3.1	874	85	4	3395	25	24	25	25	2.00
14617002--14618486	758	1.9	766	88	3	2260	26	21	24	27	1.99
14618637--14618689	26	2.0	26	100	0	106	26	20	26	26	1.99
14617741--14619557	894	2.0	893	87	3	2618	25	23	24	25	2.00
14621074--14621126	26	2.0	26	92	0	88	28	18	24	28	1.98
14619624--14627381	886	8.5	885	75	10	6066	25	24	24	25	2.00
14621980--14622032	26	2.0	26	96	0	97	26	22	26	24	2.00
14622866--14622918	26	2.0	26	96	0	97	26	18	26	28	1.98
14624734--14624786	26	2.0	26	96	0	97	26	18	26	28	1.98
14625638--14625716	26	3.0	26	98	0	149	26	21	25	26	1.99
14626569--14626621	26	2.0	26	96	0	97	26	22	26	24	2.00
14627388--14627440	26	2.0	26	88	0	79	30	18	22	28	1.98
14630594--14630644	26	2.0	26	92	0	84	31	19	21	27	1.97
14630571--14631239	351	1.9	351	87	3	979	23	27	29	20	1.99
14630971--14633582	862	3.0	856	86	3	3468	25	24	25	25	2.00
14633556--14633608	26	2.0	26	92	0	88	28	20	22	28	1.99
14633972--14634032	26	2.3	26	97	0	113	29	19	22	27	1.98
14635767--14635819	26	2.0	26	89	7	81	24	16	28	30	1.97
14633821--14637526	898	4.1	893	82	7	4180	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14636667--14636719	26	2.0	26	88	0	79	30	15	22	32	1.94
14640216--14640268	26	2.0	26	96	0	97	26	18	18	35	1.95
14641116--14641168	26	2.0	26	96	0	97	26	24	20	28	1.99
14638544--14641756	900	3.6	894	85	4	4224	26	24	23	25	2.00
14641835--14641886	26	2.0	26	96	0	95	28	26	17	26	1.97
14642729--14642781	26	2.0	26	88	0	79	26	20	22	30	1.98
14643614--14643666	26	2.0	26	92	0	88	30	26	16	26	1.97
14644507--14644559	26	2.0	26	88	0	79	22	28	22	26	1.99
14645405--14645456	26	2.0	26	92	0	86	30	26	17	25	1.97
14641758--14667889	901	29.0	895	80	8	22832	26	24	23	25	2.00
14649797--14649869	27	2.7	26	80	12	76	28	24	16	30	1.96
14649797--14649868	28	2.7	27	81	10	76	29	25	15	30	1.96
14649814--14667889	891	19.9	912	78	10	11745	26	24	23	25	2.00
14652514--14652564	26	2.0	26	96	0	93	25	25	19	29	1.99
14653431--14653483	26	2.0	26	88	0	79	32	22	16	28	1.96
14655568--14655617	26	1.9	26	87	0	73	24	26	20	30	1.98
14657287--14657339	26	2.0	26	96	0	97	26	24	22	26	2.00
14658183--14658235	26	2.0	26	88	0	79	30	24	16	28	1.97
14659986--14660036	26	2.0	26	100	0	102	23	29	19	27	1.98
14660883--14660935	26	2.0	26	88	0	79	28	20	20	30	1.98
14656433--14667889	892	12.9	891	87	4	13581	25	24	23	25	2.00
14673609--14673664	26	2.2	26	96	0	103	28	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14674524--14674575	26	2.1	24	92	7	86	26	26	19	26	1.99
14675396--14675451	26	2.2	26	100	0	112	32	25	16	26	1.96
14673579--14677127	905	4.0	889	85	4	4677	26	24	23	25	2.00
14678710--14678762	26	2.0	26	88	0	79	28	26	18	26	1.98
14679610--14679662	26	2.0	26	92	0	88	33	26	13	26	1.93
14679744--14679777	11	3.1	11	86	0	50	26	23	35	14	1.94
14680527--14680579	26	2.0	26	92	0	88	24	24	20	30	1.99
14683222--14683279	26	2.2	26	96	3	107	27	25	20	25	1.99
14684117--14684166	26	1.9	26	100	0	100	22	30	20	28	1.98
14678138--14689373	904	12.5	900	84	4	13727	26	24	23	25	2.00
14687294--14687350	26	2.2	26	83	0	69	59	14	7	19	1.57
14687709--14687761	26	2.0	26	85	0	70	32	24	16	26	1.97
14689284--14690548	655	1.9	657	88	1	1930	26	23	23	26	2.00
14690845--14690897	26	2.0	26	100	0	106	26	26	20	26	1.99
14689975--14698277	897	9.1	895	76	9	6955	25	24	24	25	2.00
14694234--14694550	171	1.9	171	83	2	422	17	30	29	22	1.97
14694598--14694650	26	2.0	26	96	0	97	26	24	20	28	1.99
14695499--14695550	26	2.0	26	88	0	77	30	25	15	28	1.96
14697297--14697349	26	2.0	26	96	0	97	28	26	18	26	1.98
14694409--14698286	902	4.3	899	84	3	4889	25	24	23	25	2.00
14698196--14698257	32	1.9	32	100	0	124	27	22	22	27	1.99
14698037--14698462	191	2.3	187	86	2	577	22	28	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14698390--14698442	26	2.0	26	100	0	106	26	26	20	26	1.99
14703845--14710448	876	7.5	878	84	4	7934	25	24	24	25	2.00
14706847--14710426	903	4.0	902	84	3	4590	25	24	24	25	2.00
14713510--14713562	26	2.0	26	92	0	88	30	26	18	24	1.98
14712545--14721634	902	10.1	898	85	3	11424	25	24	24	25	2.00
14714411--14714463	26	2.0	26	92	0	88	28	24	18	28	1.98
14715309--14715361	26	2.0	26	92	7	90	24	26	18	30	1.98
14716207--14716259	26	2.0	26	88	0	79	28	22	18	30	1.98
14712545--14721634	898	10.1	897	85	3	11448	25	24	24	25	2.00
14717094--14717146	26	2.0	26	88	0	79	28	24	22	24	2.00
14717983--14718035	26	2.0	26	96	0	97	24	28	20	26	1.99
14719810--14719859	26	1.9	26	95	0	91	24	24	22	30	1.99
14721590--14721660	26	2.7	26	84	4	90	29	23	15	30	1.95
14723232--14724466	625	2.0	625	89	1	1904	29	23	20	26	1.99
14727118--14727170	26	2.0	26	96	0	97	28	26	18	26	1.98
14728867--14728922	26	2.2	26	86	0	76	30	23	19	26	1.98
14731562--14731614	26	2.0	26	92	7	90	28	28	16	26	1.97
14728150--14732331	898	4.6	896	87	1	5629	25	24	23	25	2.00
14731588--14733048	719	2.0	714	87	2	2090	26	23	23	26	2.00
14736376--14736428	26	2.0	26	92	0	88	26	26	20	26	1.99
14737278--14737328	25	2.0	26	88	3	77	31	23	15	29	1.95
14739069--14739121	26	2.0	26	92	0	88	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14735465--14739902	901	4.9	896	85	4	5516	25	24	24	25	2.00
14740623--14740675	26	2.0	26	96	0	97	28	24	20	26	1.99
14742256--14742308	26	2.0	26	100	0	106	26	26	20	26	1.99
14743158--14743210	26	2.0	26	92	0	88	30	24	18	26	1.98
14741448--14744837	902	3.7	900	86	4	4494	25	24	23	25	2.00
14744812--14744864	27	2.0	27	100	0	106	26	28	18	26	1.98
14745717--14745795	26	3.0	25	92	3	122	27	26	20	25	1.99
14747720--14747768	21	2.3	21	92	0	80	26	0	12	61	1.31
14747721--14747790	32	2.2	32	81	0	77	27	0	11	61	1.30
14747742--14747810	11	6.5	11	73	6	52	26	0	10	63	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195