genome.fa.s112.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  182  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31057884--31058017	42	3.1	42	86	7	164	29	1	11	56	1.44
31057858--31057991	23	6.2	23	69	18	83	29	1	10	58	1.41
31057929--31058018	18	4.7	18	70	24	67	28	1	12	57	1.42
31058090--31058149	18	3.4	18	68	13	61	31	5	11	51	1.60
31058088--31058182	35	2.7	34	90	3	145	31	5	12	50	1.62
31058146--31058203	23	2.5	24	88	5	91	32	5	10	51	1.58
31064138--31064193	24	2.3	24	78	9	60	51	1	1	44	1.22
31064743--31064820	32	2.4	33	81	14	92	48	1	2	47	1.23
31064794--31064850	28	2.0	29	86	10	82	45	0	0	54	0.99
31064766--31064860	28	3.4	26	73	21	59	52	0	1	46	1.07
31065424--31065471	21	2.3	21	82	3	53	45	0	2	52	1.12
31066531--31066572	13	3.5	12	82	17	52	30	0	0	69	0.89
31066532--31066576	22	1.9	25	86	13	69	35	0	0	64	0.94
31070747--31070870	36	3.5	33	70	16	104	54	2	2	40	1.26
31070758--31070907	74	2.0	74	80	5	169	50	2	3	43	1.32
31073453--31073549	48	2.0	47	82	5	115	28	9	3	58	1.44
31074040--31074105	34	1.9	34	90	0	105	40	4	10	43	1.59
31074266--31074301	17	2.1	17	94	0	63	47	2	0	50	1.15
31074653--31074700	16	3.1	16	85	8	64	68	0	0	31	0.90
31074998--31075050	27	2.0	27	85	7	72	50	1	1	45	1.23
31076526--31076561	18	2.0	18	88	0	54	38	0	0	61	0.96
31076608--31076672	26	2.4	28	82	5	80	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31076608--31076672	13	4.8	14	76	14	55	61	0	0	38	0.96
31077317--31077358	18	2.5	17	77	11	50	52	0	0	47	1.00
31078386--31078464	40	2.0	40	90	5	124	44	8	11	35	1.72
31078930--31079022	30	3.1	30	79	11	93	35	8	5	50	1.56
31079075--31079158	29	3.0	28	80	10	102	63	2	2	32	1.20
31079083--31079170	29	3.1	27	77	16	74	62	2	2	32	1.20
31079275--31079309	2	18.0	2	94	5	63	0	48	0	51	1.00
31087001--31087026	13	2.0	13	100	0	52	46	15	23	15	1.83
31109056--31109118	30	2.1	29	85	8	83	55	0	1	42	1.09
31111385--31111417	7	4.7	7	96	0	57	42	12	0	45	1.41
31112031--31112065	16	2.1	17	89	5	54	57	0	2	40	1.14
31117081--31117109	2	14.5	2	100	0	58	0	51	0	48	1.00
31118206--31118235	14	2.1	14	93	0	51	30	3	0	66	1.07
31119036--31119075	21	2.0	20	85	14	55	47	2	0	50	1.14
31119029--31119077	21	2.5	18	81	15	53	53	2	0	44	1.12
31119112--31119155	23	1.9	23	86	9	63	45	6	0	47	1.29
31119406--31119449	23	1.9	24	86	9	65	47	0	2	50	1.13
31124569--31124600	2	16.0	2	100	0	64	50	0	0	50	1.00
31136366--31136391	1	26.0	1	100	0	52	0	0	0	100	0.00
31139874--31139945	36	2.0	36	94	0	126	61	9	1	27	1.36
31139970--31140012	20	2.2	20	83	8	52	37	11	9	41	1.74
31140110--31140136	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31145196--31145221	1	26.0	1	100	0	52	0	0	0	100	0.00
31158778--31158811	16	2.1	17	88	5	52	0	14	2	82	0.79
31159734--31159769	18	2.0	18	100	0	72	44	11	16	27	1.82
31167967--31168020	28	2.0	27	82	10	65	50	3	7	38	1.48
31172815--31172844	15	1.9	16	93	6	53	33	0	0	66	0.92
31172889--31172961	28	2.6	27	81	16	85	32	1	0	65	1.01
31177897--31177928	9	3.6	9	91	0	55	46	0	28	25	1.53
31179365--31179687	163	2.0	163	94	1	567	34	17	12	35	1.87
31188467--31188520	28	1.9	28	85	7	74	42	18	5	33	1.73
31194460--31194485	2	13.0	2	100	0	52	50	0	50	0	1.00
31197188--31197214	14	1.9	14	100	0	54	44	0	14	40	1.46
31197958--31198058	39	2.8	37	73	20	97	46	0	0	52	1.07
31198830--31198863	18	1.9	17	88	5	50	41	0	0	58	0.98
31198872--31198952	16	5.1	16	75	20	53	55	1	0	43	1.07
31202572--31202606	8	4.5	8	85	7	54	0	0	11	88	0.51
31202572--31202605	15	2.3	15	90	10	52	0	0	11	88	0.52
31215005--31215056	14	3.8	14	79	5	52	55	0	1	42	1.10
31215035--31215082	22	2.2	22	85	7	62	66	0	2	31	1.03
31219025--31219091	27	2.4	29	76	16	70	49	0	0	50	1.00
31220041--31220088	19	2.5	20	84	15	66	52	0	0	47	1.00
31220050--31220093	21	2.1	21	87	8	63	50	0	0	50	1.00
31221161--31221189	7	4.1	7	100	0	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31222479--31222504	12	2.2	12	100	0	52	38	7	7	46	1.61
31229899--31230009	55	2.0	55	94	0	195	27	12	27	31	1.93
31232845--31232913	34	2.0	36	82	5	88	49	0	0	50	1.00
31232908--31232948	15	2.4	18	80	15	52	31	7	0	60	1.24
31232911--31232947	17	2.3	17	86	9	51	29	8	0	62	1.24
31240294--31240363	29	2.3	29	80	4	77	51	1	2	44	1.25
31246130--31246169	20	2.0	20	100	0	80	20	30	25	25	1.99
31246133--31246176	20	2.2	20	91	0	70	18	31	27	22	1.97
31248180--31248246	34	2.0	34	90	0	107	29	13	17	38	1.88
31248472--31248522	16	3.3	15	78	15	50	58	0	5	35	1.22
31251806--31251848	21	2.0	22	86	4	61	41	0	0	58	0.98
31252264--31252317	25	2.3	25	78	12	62	59	11	0	29	1.32
31253799--31253890	23	3.9	24	79	9	93	36	0	5	57	1.22
31254770--31254833	29	2.2	28	78	10	67	43	0	1	54	1.09
31258364--31258395	14	2.3	14	94	0	55	87	0	12	0	0.54
31262657--31262736	34	2.4	34	83	8	92	40	18	6	35	1.76
31264859--31264926	31	2.2	32	83	2	93	45	2	1	50	1.26
31264975--31265040	28	2.4	27	82	7	87	48	1	0	50	1.10
31265020--31265049	12	2.5	12	100	0	60	50	0	0	50	1.00
31265281--31265336	28	2.0	28	82	3	67	35	1	5	57	1.32
31268798--31268841	22	2.0	21	86	4	61	56	0	0	43	0.99
31268796--31268868	26	2.6	26	80	10	74	50	4	0	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31273607--31273642	10	3.6	10	84	0	54	41	0	8	50	1.33
31275248--31275304	23	2.7	21	89	8	80	43	8	5	42	1.58
31275248--31275294	23	2.0	23	100	0	94	46	8	4	40	1.54
31275770--31275805	2	18.0	2	91	0	54	44	0	2	52	1.15
31275776--31275811	18	1.9	19	94	5	65	38	2	2	55	1.29
31276027--31276086	18	3.3	18	75	11	68	51	0	0	48	1.00
31276178--31276252	29	2.5	29	79	16	73	30	1	9	58	1.38
31276239--31276285	25	1.9	25	95	4	87	29	0	6	63	1.19
31276238--31276294	25	2.5	22	82	17	80	28	0	5	66	1.13
31277063--31277108	22	2.1	23	84	8	60	67	4	0	28	1.10
31277331--31277399	27	2.6	27	100	0	138	28	18	18	33	1.95
31278217--31278311	28	3.4	27	87	8	120	46	11	12	29	1.77
31279759--31279939	94	1.9	93	83	3	229	45	11	4	38	1.61
31280334--31280360	12	2.2	12	100	0	54	55	0	0	44	0.99
31288181--31288216	17	2.2	16	90	5	54	36	0	0	63	0.94
31289355--31289683	165	2.0	164	93	2	563	33	16	24	26	1.96
31291430--31291524	28	3.4	27	87	8	120	46	11	12	29	1.77
31302555--31302878	165	2.0	161	93	3	553	33	15	24	26	1.95
31318651--31318703	15	3.5	15	75	12	54	49	5	0	45	1.26
31340436--31340465	3	10.3	3	92	7	53	30	0	0	70	0.88
31340631--31340674	20	2.1	21	95	4	81	47	0	0	52	1.00
31346277--31346348	36	2.0	37	86	2	101	31	16	20	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31354307--31354333	2	13.5	2	100	0	54	51	48	0	0	1.00
31356003--31356029	12	2.2	12	100	0	54	37	11	7	44	1.68
31358558--31358605	21	2.2	23	85	7	64	62	0	4	33	1.14
31359130--31359506	188	2.0	188	99	0	745	36	11	14	37	1.82
31366307--31366399	46	2.0	46	95	0	168	38	18	13	29	1.89
31370434--31370492	21	2.8	22	77	7	61	45	0	0	54	0.99
31371519--31371588	30	2.3	30	77	2	77	41	0	1	57	1.08
31371554--31371595	21	2.0	21	95	4	77	54	0	0	45	0.99
31371553--31371601	18	2.6	19	84	15	66	51	0	0	48	1.00
31378630--31378680	19	2.6	20	75	9	52	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195