Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  48  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10056055--10056684
49
12.8
50
74
14
298
28
12
20
38
1.89
10056445--10056687
51
4.8
51
80
9
207
29
9
18
41
1.83
10056840--10056885
20
2.3
20
85
11
67
65
6
6
21
1.39
10056887--10056937
21
2.4
21
83
6
59
74
7
0
17
1.05
10060811--10060836
13
2.0
13
100
0
52
38
15
15
30
1.88
10071925--10071968
22
2.0
22
86
0
61
34
9
13
43
1.76
10072092--10072226
67
2.0
67
94
0
234
23
17
8
51
1.72
10072178--10072227
25
2.0
25
88
7
75
20
20
8
52
1.71
10072186--10072236
25
2.0
25
81
7
59
21
17
7
52
1.69
10077079--10077129
23
2.3
23
80
10
61
58
5
11
23
1.55
10080429--10080453
12
2.1
12
100
0
50
24
36
8
32
1.84
10080971--10081022
21
2.5
20
82
11
61
36
1
9
51
1.46
10081765--10081865
41
2.5
41
93
0
166
39
3
12
43
1.62
10083026--10083085
29
2.1
29
96
0
111
15
43
6
35
1.72
10090810--10090836
13
2.1
13
100
0
54
0
7
14
77
0.97
10092995--10093459
155
3.0
155
97
0
896
24
22
33
18
1.97
10095593--10095620
14
2.0
14
100
0
56
14
21
35
28
1.92
10098539--10098582
18
2.5
17
85
10
54
43
2
2
52
1.26
10105683--10105716
9
3.8
9
100
0
68
23
0
20
55
1.43
10108637--10108667
16
1.9
16
93
0
53
51
3
0
45
1.17
10108797--10108852
24
2.4
25
82
14
66
39
1
1
57
1.20
10109454--10109498
16
2.8
17
86
6
58
51
2
0
46
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10109454--10109484
16
1.9
16
100
0
62
51
3
0
45
1.17
10109487--10109533
24
1.9
25
86
4
69
51
2
0
46
1.13
10118091--10118163
6
11.8
6
76
15
60
76
4
5
13
1.11
10118973--10119014
22
2.0
21
85
4
57
35
2
0
61
1.09
10119329--10119358
2
15.5
2
93
6
53
53
0
0
46
1.00
10119606--10119682
21
3.6
22
76
11
72
54
2
5
37
1.37
10121213--10121266
20
2.7
19
94
2
90
35
7
11
46
1.67
10121243--10121290
16
3.0
16
71
0
51
27
6
10
56
1.57
10121341--10121406
32
2.1
32
91
5
107
27
6
9
57
1.53
10121410--10121473
31
2.1
31
90
0
101
26
7
12
53
1.66
10121440--10121493
20
2.5
23
77
14
62
29
5
11
53
1.59
10121449--10121649
55
3.8
54
84
5
223
28
4
11
55
1.54
10121507--10121612
32
3.6
30
70
23
91
29
4
9
56
1.51
10121319--10121566
83
2.9
83
81
9
279
28
5
10
55
1.56
10121543--10121588
22
2.0
23
87
4
67
26
4
8
60
1.44
10121539--10121602
20
3.0
20
78
10
74
29
4
7
57
1.47
10121502--10121655
20
8.2
20
65
25
61
29
4
10
55
1.54
10121643--10121846
32
6.9
32
68
19
88
28
1
13
55
1.49
10121683--10121729
25
2.0
25
84
12
64
29
2
6
61
1.32
10121706--10121744
19
2.1
19
90
0
60
28
5
12
53
1.60
10121713--10121774
24
2.6
24
85
12
83
30
3
12
53
1.55
10121867--10121905
19
2.1
19
85
0
51
28
7
10
53
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10122066--10122144
18
4.2
20
74
12
69
32
3
10
53
1.53
10123176--10123213
3
12.7
3
100
0
76
34
0
0
65
0.93
10124033--10124111
29
2.7
29
80
2
86
35
1
5
58
1.28
10126959--10127018
22
2.7
22
78
17
63
81
5
8
5
0.97
10127732--10127776
24
2.0
22
82
8
54
66
2
2
28
1.15
10128332--10128421
44
2.0
45
91
2
146
66
1
4
27
1.18
10128523--10128547
12
2.1
12
100
0
50
68
0
0
32
0.90
10129226--10129262
14
2.7
14
91
4
58
81
2
5
10
0.96
10129228--10129286
23
2.5
22
78
10
64
77
1
6
13
1.03
10129348--10129387
17
2.4
16
83
4
53
82
5
2
10
0.91
10129351--10129409
22
2.6
23
86
5
75
79
6
5
8
1.04
10134806--10134954
22
6.8
22
78
3
111
42
7
10
38
1.68
10137971--10138197
113
2.0
112
88
0
337
39
11
15
33
1.82
10144634--10144683
19
2.5
20
83
6
57
42
2
2
54
1.23
10147004--10147248
118
2.0
121
90
5
390
44
10
9
35
1.71
10149300--10149328
2
14.5
2
100
0
58
51
0
0
48
1.00
10154233--10154318
27
3.2
26
79
14
93
37
0
0
62
0.95
10154240--10154276
19
1.9
19
94
0
65
32
0
0
67
0.91
10154246--10154318
25
2.8
25
86
14
87
35
0
0
64
0.94
10155621--10155688
34
2.0
34
97
0
127
38
5
16
39
1.73
10160129--10160164
2
18.0
2
94
0
63
50
2
0
47
1.15
10162393--10162427
2
17.5
2
100
0
70
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10164574--10164627
21
2.7
21
88
5
76
61
0
0
38
0.96
10164564--10164639
21
3.7
19
78
18
73
60
2
0
36
1.11
10166754--10166781
3
9.3
3
100
0
56
67
0
0
32
0.91
10184238--10184334
48
2.0
48
95
0
176
35
12
10
42
1.77
10184441--10184478
3
12.7
3
100
0
76
68
31
0
0
0.90
10184477--10184510
3
11.3
3
100
0
68
67
0
0
32
0.91
10191174--10191213
14
2.7
15
80
7
55
40
5
2
52
1.37
10192129--10192202
29
2.7
27
89
8
105
55
0
0
44
0.99
10192943--10193105
75
2.2
75
82
6
195
50
6
19
23
1.70
10195466--10195492
2
13.5
2
100
0
54
51
0
0
48
1.00
10198188--10198236
2
26.0
2
76
19
52
48
4
0
46
1.20
10202924--10203327
60
6.8
59
87
7
572
34
10
6
48
1.64
10202924--10203327
59
6.8
58
87
8
543
34
10
6
48
1.64
10204014--10204039
11
2.4
11
100
0
52
30
23
30
15
1.95
10204668--10204706
20
2.0
20
95
5
71
20
15
28
35
1.93
10205231--10205381
12
11.9
12
70
19
53
65
4
1
27
1.23
10205307--10205337
4
7.8
4
92
0
53
74
0
3
22
0.96
10205230--10205380
14
10.4
14
66
22
62
65
4
1
27
1.23
10205229--10205390
20
9.2
17
67
22
68
66
4
1
27
1.23
10205584--10205640
7
8.7
7
79
12
68
1
0
12
85
0.66
10205583--10205639
20
3.0
19
90
10
82
3
0
12
84
0.75
10205586--10205641
12
4.4
12
80
12
67
1
0
14
83
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10205584--10205640
27
2.2
25
90
6
87
1
0
12
85
0.66
10205648--10205950
41
7.1
42
84
8
375
35
21
17
24
1.95
10205648--10205950
125
2.4
123
86
6
383
35
21
17
24
1.95
10205931--10205969
19
2.1
19
100
0
78
30
15
20
33
1.94
10205950--10206052
41
2.5
41
87
10
149
36
19
18
25
1.94
10207269--10207299
8
3.9
8
91
0
53
9
16
0
74
1.07
10207293--10207341
11
4.4
11
80
12
55
4
18
0
77
0.92
10210046--10210075
15
2.1
15
93
6
53
23
0
30
46
1.52
10211230--10211593
59
6.2
59
87
5
488
34
11
7
46
1.69
10211233--10211576
120
2.9
116
88
6
496
34
11
7
46
1.69
10212869--10212914
19
2.4
19
82
7
58
63
6
8
21
1.46
10212977--10213016
16
2.6
17
85
14
52
60
2
0
37
1.11
10213055--10213138
16
4.9
17
70
16
59
66
4
2
26
1.23
10216253--10216307
28
2.0
28
82
7
67
41
7
10
40
1.68
10221452--10221477
13
2.0
13
100
0
52
46
0
23
30
1.53
10226888--10226930
21
2.0
21
90
0
68
27
2
23
46
1.64
10226897--10226940
21
2.1
21
91
0
70
29
6
20
43
1.78
10226971--10227011
21
1.9
22
85
5
57
41
4
7
46
1.53
10226908--10227082
66
2.6
66
80
2
172
38
6
12
42
1.68
10226899--10227139
67
3.6
66
77
5
189
36
5
14
42
1.70
10227151--10227235
44
1.9
44
90
0
134
29
15
16
38
1.89
10227171--10227261
44
2.1
44
81
8
105
32
10
15
40
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10227302--10227374
27
2.6
27
85
10
94
31
5
10
52
1.59
10227322--10227473
36
4.2
36
77
11
114
26
9
12
51
1.71
10227331--10227471
18
7.7
18
75
13
92
26
10
12
50
1.73
10227374--10227482
36
2.9
38
77
15
127
24
12
11
50
1.74
10227484--10227547
22
3.0
22
71
8
60
29
12
17
40
1.86
10228261--10228336
28
2.6
27
83
10
80
18
5
1
75
1.07
10228416--10228466
24
2.1
25
92
3
86
25
5
7
60
1.47
10228409--10228467
24
2.3
25
85
11
84
25
5
8
61
1.46
10228517--10228557
3
13.3
3
94
5
73
31
0
0
68
0.90
10228517--10228554
19
2.0
19
100
0
76
31
0
0
68
0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195