genome.fa.s112.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  58  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11938903--11938956	7	8.1	7	84	12	69	29	0	0	70	0.88
11938898--11938967	13	5.4	13	80	10	72	27	0	0	72	0.84
11938952--11939140	4	45.8	4	68	18	95	29	2	1	67	1.11
11938981--11939077	27	3.4	28	79	13	90	31	2	0	65	1.04
11938952--11939138	60	3.2	57	77	14	157	29	2	1	66	1.12
11938901--11939140	20	11.9	20	70	18	128	29	2	0	67	1.07
11938956--11939111	66	2.3	68	77	14	169	29	2	1	66	1.13
11939985--11940028	3	14.7	3	80	0	52	27	2	4	65	1.23
11939991--11940028	15	2.5	15	91	0	58	28	2	5	63	1.30
11940111--11940326	57	3.7	58	84	6	278	41	7	14	36	1.75
11944325--11944366	16	2.5	17	88	7	68	90	0	7	2	0.53
11944325--11944364	1	40.0	1	84	0	53	92	0	5	2	0.45
11945772--11945853	43	1.9	42	85	7	112	37	10	15	35	1.83
11946159--11946577	42	10.2	39	79	8	270	25	12	20	41	1.87
11946152--11946588	82	5.3	82	82	7	424	26	12	20	40	1.88
11946239--11946828	82	7.0	85	81	8	457	25	13	19	40	1.89
11946239--11946828	42	14.0	42	80	9	419	25	13	19	40	1.89
11946239--11946784	169	3.3	166	78	8	493	26	13	19	40	1.89
11946239--11946778	127	4.3	125	79	8	365	26	13	19	40	1.89
11946846--11946883	10	3.9	10	79	6	51	89	2	2	5	0.64
11946847--11946883	19	1.9	19	94	0	65	89	2	2	5	0.66
11947028--11947096	5	13.0	5	78	17	61	23	0	1	75	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11947039--11947098	7	8.6	7	75	10	52	21	0	1	76	0.87
11947030--11947225	6	29.8	6	68	20	60	27	2	2	68	1.13
11947068--11947235	4	41.8	4	65	16	71	28	2	1	66	1.16
11947030--11947205	42	4.1	41	72	19	112	27	2	1	68	1.11
11947091--11947202	57	1.9	60	80	12	135	29	3	1	65	1.20
11947110--11947228	22	5.5	22	73	19	90	30	3	0	65	1.14
11947108--11947214	42	2.5	43	80	10	123	31	3	0	63	1.18
11947114--11947266	42	3.6	42	75	11	118	29	5	0	64	1.20
11947542--11947591	25	2.0	24	84	3	64	28	0	12	60	1.32
11947596--11947664	31	2.2	31	86	2	93	18	11	21	47	1.80
11948104--11948144	12	3.2	12	89	6	55	21	0	2	75	0.92
11948211--11948431	117	1.9	116	86	4	320	41	5	15	37	1.71
11948216--11948431	59	3.7	57	84	9	285	41	5	15	37	1.71
11957453--11957479	2	13.5	2	100	0	54	48	0	0	51	1.00
11961335--11961583	49	4.8	53	77	11	176	40	8	6	43	1.62
11961386--11961591	49	4.0	50	80	10	238	37	7	5	49	1.55
11962265--11962319	20	2.9	20	77	17	64	76	1	3	18	1.02
11962839--11962907	3	23.0	3	84	0	93	40	0	0	59	0.97
11963248--11963289	22	1.9	22	85	0	57	64	7	7	21	1.43
11963767--11963807	19	2.2	19	86	0	55	9	4	2	82	0.89
11963891--11963961	8	8.2	8	73	14	61	77	4	2	15	1.04
11963890--11963918	14	2.0	15	93	6	51	82	0	0	17	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11963891--11963945	9	5.9	9	77	14	58	80	5	0	14	0.89
11963891--11963961	18	4.1	17	75	12	63	77	4	2	15	1.04
11964038--11964077	18	2.2	18	95	0	71	70	0	5	25	1.08
11964408--11964468	25	2.5	24	74	12	61	68	4	0	26	1.09
11968909--11968947	16	2.3	18	91	8	64	79	7	0	12	0.93
11969806--11969939	40	3.3	40	85	4	189	32	11	14	41	1.83
11969804--11969972	80	2.1	80	84	1	212	30	13	15	39	1.87
11970064--11970135	33	2.2	33	85	9	94	29	15	18	37	1.91
11970096--11970292	40	4.9	40	80	5	202	28	14	16	40	1.88
11971680--11971722	19	2.1	21	91	8	72	72	0	4	23	1.04
11972034--11972097	31	2.1	31	88	2	94	71	1	0	26	0.94
11973610--11973684	33	2.3	34	81	6	84	33	21	14	30	1.93
11973694--11973999	34	9.5	34	71	14	170	34	20	15	29	1.93
11973612--11973771	83	1.9	82	81	10	193	35	20	13	30	1.92
11974251--11974300	16	2.9	17	79	8	57	54	8	12	26	1.64
11976540--11976635	33	2.9	33	79	13	83	36	16	14	32	1.89
11976829--11976893	23	2.9	23	79	6	71	38	23	18	20	1.93
11977379--11977454	37	2.1	37	82	9	93	71	0	2	26	1.00
11977383--11977459	17	4.4	17	75	16	68	68	0	2	28	1.02
11979428--11979478	13	3.9	13	78	0	57	56	21	3	17	1.57
11999741--11999788	24	2.1	24	92	7	82	18	18	18	43	1.88
12002991--12003019	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12009225--12009283	3	19.7	3	96	0	109	32	0	1	66	1.02
12009758--12009801	15	2.9	15	79	0	61	27	0	2	70	0.99
12012413--12012460	21	2.3	21	92	0	78	35	12	20	31	1.90
12012421--12012466	21	2.2	21	84	0	56	41	10	23	23	1.86
12017405--12017438	17	2.0	17	94	0	59	23	26	5	44	1.76
12021055--12021101	20	2.3	22	78	14	55	42	14	12	29	1.83
12021933--12021972	21	1.9	21	84	0	53	37	5	5	52	1.45
12022754--12022790	2	18.5	2	88	0	56	45	5	0	48	1.25
12022953--12022999	22	2.1	23	84	4	60	48	6	2	42	1.40
12027135--12027214	40	2.0	40	95	0	142	41	8	18	31	1.81
12028870--12028947	39	2.0	39	87	5	113	39	10	20	29	1.85
12030236--12030359	66	1.9	66	83	9	164	25	22	11	41	1.87
12031738--12031771	17	1.9	17	88	5	50	11	0	5	82	0.83
12031781--12031824	3	14.3	3	90	4	70	31	0	2	65	1.05
12033128--12033161	15	2.2	16	89	5	52	61	0	0	38	0.96
12033596--12033621	3	8.7	3	100	0	52	34	0	0	65	0.93
12033623--12033660	14	2.8	13	84	15	51	2	13	0	84	0.73
12033632--12033685	7	7.4	7	76	15	56	1	18	0	79	0.82
12034999--12035033	17	1.9	17	88	11	52	65	0	0	34	0.93
12035468--12035496	14	2.0	15	93	6	51	75	0	0	24	0.80
12035473--12035510	19	2.0	20	84	5	51	78	2	2	15	0.97
12040471--12040511	20	2.0	21	85	4	57	39	24	14	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12043888--12043915	1	28.0	1	100	0	56	0	0	100	0	0.00
12044188--12044221	17	2.0	17	100	0	68	35	17	11	35	1.87
12051040--12051078	20	2.0	20	90	10	62	35	0	0	64	0.94
12057568--12057611	7	6.6	7	84	5	56	15	0	2	81	0.78
12057568--12057610	13	3.3	12	87	12	59	16	0	2	81	0.79
12057568--12057610	19	2.2	20	91	4	70	16	0	2	81	0.79
12057629--12057799	4	44.5	4	70	16	80	29	4	2	64	1.24
12057629--12057789	7	22.6	7	70	23	97	29	3	2	64	1.24
12057637--12057786	3	44.7	3	71	23	72	29	4	2	64	1.22
12057637--12057786	10	14.5	10	73	19	114	29	4	2	64	1.22
12057637--12057775	49	2.8	49	75	19	133	29	4	2	64	1.25
12057637--12057798	34	4.6	36	76	17	144	29	4	1	64	1.23
12057634--12057816	53	3.7	48	74	19	137	28	4	1	64	1.24
12057573--12057817	59	4.3	56	72	15	161	25	4	2	67	1.23
12058704--12058747	15	2.9	15	80	19	56	29	2	0	68	1.02
12058773--12058812	20	2.0	20	100	0	80	15	5	0	80	0.88
12058824--12059035	56	3.7	57	82	8	218	45	6	12	35	1.66
12062197--12062227	15	2.1	15	93	0	53	19	29	6	45	1.75
12069453--12069510	20	3.1	19	80	9	75	82	0	8	8	0.84
12069458--12069507	26	1.9	26	88	8	75	80	0	10	10	0.92
12069452--12069510	11	4.9	11	75	18	55	81	0	10	8	0.88
12070519--12070647	41	3.1	41	79	8	147	25	15	23	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12070619--12070741	45	2.7	45	91	2	194	21	10	24	43	1.83
12070920--12071111	4	47.2	4	68	21	64	26	4	2	67	1.22
12070962--12071111	7	20.6	7	71	21	89	29	4	2	64	1.26
12070967--12071086	42	2.9	42	79	10	122	30	4	2	63	1.26
12071062--12071147	42	2.0	42	82	4	102	29	8	0	62	1.23
12072057--12072118	5	11.8	5	80	16	72	17	1	1	79	0.90
12072057--12072118	12	5.2	12	76	12	58	17	1	1	79	0.90
12072058--12072117	14	4.2	14	74	18	61	18	1	1	78	0.92
12072136--12072351	62	3.7	58	81	9	242	43	6	13	36	1.69
12072134--12072351	58	3.7	62	82	4	231	44	5	13	36	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195