genome.fa.s112.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  150  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25229117--25229199	27	3.7	22	69	25	59	44	2	0	53	1.13
25229172--25229238	29	2.3	28	80	14	73	49	0	0	50	1.00
25229740--25229786	24	1.9	24	82	4	58	27	0	0	72	0.85
25230470--25230519	25	2.0	25	84	4	64	74	2	18	6	1.12
25230787--25230825	16	2.4	17	86	4	53	76	5	0	17	0.96
25230988--25231026	3	13.0	3	94	0	69	64	0	2	33	1.08
25231413--25231465	25	2.2	23	80	16	54	7	9	5	77	1.12
25231995--25232050	8	6.5	8	74	22	51	23	3	1	71	1.11
25233092--25233156	23	2.7	23	81	15	69	43	1	1	53	1.19
25234565--25234607	23	1.9	23	86	13	63	18	4	4	72	1.20
25235517--25235572	26	2.2	25	84	9	69	8	7	5	78	1.08
25236419--25236641	71	3.3	67	76	10	213	38	8	2	49	1.48
25236560--25236748	105	1.8	105	88	0	288	39	8	3	48	1.49
25236736--25236780	20	2.3	20	88	7	67	46	4	4	44	1.43
25236744--25236784	20	2.0	20	100	0	82	41	4	4	48	1.46
25245890--25245951	29	2.3	27	81	10	65	41	0	1	56	1.09
25246167--25246359	61	3.2	60	71	10	158	38	4	18	38	1.70
25246518--25246821	128	2.4	129	81	6	350	41	3	10	43	1.58
25255564--25255616	20	2.5	22	76	14	58	33	0	3	62	1.13
25260624--25260658	2	17.5	2	100	0	70	51	0	0	48	1.00
25260883--25260913	2	15.5	2	100	0	62	48	0	0	51	1.00
25263831--25263897	2	34.5	2	80	5	75	47	1	4	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25263827--25263882	21	2.7	21	91	0	85	46	0	7	46	1.30
25264003--25264106	48	2.2	48	85	3	138	39	1	6	51	1.39
25264034--25264087	27	2.0	27	92	0	90	33	3	7	55	1.45
25264059--25264111	21	2.5	21	87	0	79	37	3	7	50	1.49
25264059--25264118	21	2.9	21	82	5	59	35	6	6	51	1.54
25264433--25264493	22	2.8	22	82	0	68	37	8	8	45	1.64
25264654--25264817	44	3.8	43	75	8	136	38	8	5	47	1.57
25264673--25264724	22	2.4	22	72	21	54	34	5	11	48	1.63
25264654--25264849	85	2.3	84	82	3	232	38	8	5	47	1.55
25264745--25264820	22	3.5	21	67	13	55	39	9	3	47	1.54
25264675--25264817	44	3.3	44	75	9	141	39	7	5	47	1.56
25264900--25264959	22	2.7	23	77	10	56	36	6	5	51	1.50
25264911--25264972	22	2.8	22	85	9	65	37	11	4	46	1.61
25264955--25265074	22	5.6	21	74	7	89	35	10	4	50	1.55
25265130--25265210	22	3.7	22	83	3	83	37	6	7	49	1.56
25265153--25265204	11	4.7	11	76	7	52	38	3	7	50	1.50
25265325--25265372	22	2.2	22	84	0	60	47	14	0	37	1.44
25265331--25265424	22	4.3	21	77	4	71	41	9	3	45	1.53
25265448--25265487	19	2.1	19	85	0	53	37	10	5	47	1.59
25270678--25270706	13	2.1	14	93	6	51	55	0	3	41	1.17
25272143--25272173	15	2.1	15	93	0	53	67	6	0	25	1.14
25272273--25272323	16	3.2	16	80	5	50	41	1	1	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25274771--25274823	21	2.5	21	84	6	63	39	0	1	58	1.09
25274771--25274823	10	5.2	10	84	8	63	39	0	1	58	1.09
25290620--25290650	15	2.1	15	93	0	53	48	6	6	38	1.55
25291541--25291591	24	2.1	24	92	0	84	21	1	5	70	1.18
25295537--25295706	84	2.0	84	97	0	322	45	13	5	35	1.66
25296206--25296254	22	2.2	22	82	7	55	53	2	12	32	1.50
25296399--25296459	22	2.8	22	87	0	77	49	0	6	44	1.28
25296399--25296450	11	4.7	11	76	9	52	48	0	5	46	1.26
25296520--25296611	22	4.2	22	71	9	73	53	2	8	35	1.44
25296638--25296740	41	2.4	42	75	10	95	47	3	8	39	1.53
25296923--25296970	22	2.2	22	84	0	60	50	12	4	33	1.59
25297026--25297077	22	2.4	22	83	0	59	50	3	9	36	1.54
25297044--25297125	22	3.7	21	79	6	74	43	4	10	40	1.61
25297261--25297339	21	3.7	20	69	20	61	59	1	2	36	1.19
25297244--25297340	44	2.2	44	92	1	158	58	3	3	35	1.29
25297395--25297491	22	4.5	21	70	6	77	52	4	5	38	1.43
25297434--25297491	11	5.3	11	76	14	57	51	1	3	43	1.28
25297529--25297698	22	7.7	22	68	16	93	50	5	5	38	1.51
25297933--25298176	22	11.2	22	75	1	186	53	6	1	38	1.37
25297935--25298145	87	2.4	87	81	6	223	54	6	1	38	1.35
25297935--25298123	43	4.4	42	75	9	137	52	6	1	39	1.36
25298022--25298147	65	1.9	65	83	3	164	55	4	0	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25297967--25298169	109	1.9	109	80	0	244	53	7	0	37	1.37
25298254--25298303	18	2.9	18	80	17	61	50	0	2	48	1.12
25298322--25298354	11	3.1	11	82	8	50	51	6	0	42	1.26
25302420--25302483	32	2.0	32	96	0	119	28	6	7	57	1.51
25303326--25303389	32	1.9	35	87	9	98	34	0	10	54	1.35
25303377--25303654	129	2.2	127	84	4	344	41	2	11	45	1.53
25305018--25305056	19	2.2	17	86	9	51	58	2	0	38	1.12
25307137--25307176	3	13.3	3	100	0	80	32	0	0	67	0.91
25317190--25317269	34	2.4	34	93	4	137	45	6	12	36	1.67
25319549--25319609	32	1.9	32	83	6	79	34	3	9	52	1.51
25321230--25321330	5	20.4	5	67	17	50	69	2	2	24	1.17
25321216--25321260	23	2.0	23	82	8	56	73	6	0	20	1.05
25321216--25321305	32	2.9	32	83	9	123	70	4	3	22	1.21
25321279--25321326	17	2.9	17	84	3	53	68	0	2	29	1.01
25322051--25322140	3	32.3	3	79	18	106	64	1	1	33	1.08
25322071--25322284	5	41.2	5	75	13	116	58	6	0	34	1.29
25322051--25322284	18	12.4	18	71	21	126	59	5	1	33	1.28
25322051--25322284	26	9.0	26	72	12	140	59	5	1	33	1.28
25322053--25322294	23	10.3	23	68	18	76	59	5	1	32	1.31
25322198--25322285	3	32.3	3	67	22	52	64	2	1	31	1.13
25322266--25322310	18	2.5	18	77	0	54	68	4	4	22	1.25
25322424--25322622	55	3.6	55	81	0	191	37	12	26	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25322521--25322699	55	3.3	55	80	1	189	40	13	22	23	1.89
25323497--25323635	61	2.3	61	86	1	190	44	10	20	25	1.82
25323497--25323659	61	2.7	60	83	3	159	44	10	20	23	1.82
25324395--25324428	10	3.3	10	95	4	59	0	11	0	88	0.52
25324397--25324449	27	2.0	27	81	7	63	3	11	3	81	0.96
25327735--25327765	16	1.9	16	93	0	53	35	0	9	54	1.33
25329219--25329269	14	3.6	14	75	12	50	70	5	1	21	1.18
25329198--25329258	14	3.9	16	75	14	56	67	9	3	19	1.34
25329220--25329293	21	3.5	21	77	18	59	72	4	2	20	1.13
25329203--25329274	30	2.3	32	83	9	87	69	6	4	19	1.28
25329660--25329684	11	2.3	11	100	0	50	16	0	8	76	1.02
25330101--25330357	5	49.2	5	77	10	189	57	5	1	34	1.33
25330226--25330358	3	48.3	3	72	19	103	62	3	1	33	1.20
25330226--25330343	17	6.6	18	72	22	61	61	2	1	33	1.19
25330422--25330459	20	2.0	20	89	5	60	31	23	18	26	1.97
25332000--25332047	17	2.9	17	78	9	55	43	0	16	39	1.48
25332099--25332136	19	2.0	19	85	10	51	36	0	21	42	1.53
25332011--25332164	72	2.1	72	81	8	179	33	1	22	42	1.62
25335666--25335874	93	2.2	94	82	4	251	41	6	7	44	1.59
25336655--25336722	18	3.7	18	82	4	73	67	10	1	20	1.28
25336675--25336722	6	8.0	6	78	0	51	66	8	2	22	1.29
25341056--25341103	22	2.2	22	84	0	60	14	14	41	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25348438--25348502	30	2.2	30	83	5	78	52	3	3	41	1.32
25348717--25348747	16	2.0	16	93	6	55	45	0	0	54	0.99
25354157--25354209	23	2.5	21	79	17	56	50	0	0	49	1.00
25354920--25354979	25	2.4	25	72	22	63	48	3	6	41	1.46
25354958--25355072	32	3.5	32	70	4	104	39	4	5	51	1.44
25356018--25356366	34	10.7	33	69	10	164	20	18	13	46	1.83
25356018--25356250	65	3.6	65	84	3	281	21	18	13	46	1.83
25356002--25356248	130	1.9	130	84	3	336	21	18	12	47	1.82
25356115--25356412	162	1.8	163	82	5	388	22	17	13	46	1.82
25356320--25356527	65	3.2	65	82	4	249	25	17	9	47	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195