genome.fa.s112.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  9  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760691--1760935	39	6.3	38	78	6	233	26	8	20	43	1.81
1760723--1760945	78	2.8	77	85	4	295	25	10	20	43	1.84
1760692--1760906	117	1.8	117	85	4	299	25	9	20	43	1.83
1761112--1761158	3	16.0	3	80	12	53	31	0	2	65	1.04
1761536--1761563	11	2.5	11	100	0	56	50	0	7	42	1.30
1763671--1763749	29	2.7	28	80	11	70	40	2	2	54	1.27
1763769--1763834	30	2.2	29	83	2	78	51	3	6	39	1.42
1774051--1774085	18	1.9	18	88	0	52	5	40	8	45	1.58
1775937--1776032	46	2.1	45	84	5	131	37	10	5	46	1.60
1780566--1780623	30	1.9	30	89	0	89	41	3	0	55	1.17
1788398--1788437	21	2.0	20	90	5	62	55	2	0	42	1.13
1794848--1794880	17	1.9	17	93	0	57	54	0	0	45	0.99
1807522--1807546	12	2.1	12	100	0	50	32	8	8	52	1.60
1807783--1807815	15	2.1	16	94	5	59	72	6	0	21	1.05
1807902--1807969	23	3.0	23	83	8	79	58	0	0	41	0.98
1807916--1807978	21	3.0	21	84	6	74	53	0	0	46	1.00
1807994--1808046	18	2.8	18	74	5	52	56	1	0	41	1.10
1816919--1816948	6	5.0	6	100	0	60	66	0	0	33	0.92
1821609--1821642	17	2.0	17	100	0	68	29	17	17	35	1.93
1830085--1830127	10	4.3	10	84	0	50	34	0	13	51	1.42
1833000--1833030	6	5.2	6	96	0	53	35	35	29	0	1.58
1834392--1834683	101	2.9	99	83	3	361	49	10	7	32	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1851209--1851296	42	2.0	44	93	6	153	51	18	5	25	1.68
1852823--1852847	13	1.9	13	100	0	50	0	8	4	88	0.64
1852820--1852861	19	2.3	18	91	4	66	0	9	2	88	0.61
1852820--1852861	12	3.5	12	81	12	59	0	9	2	88	0.61
1856753--1856782	2	15.0	2	100	0	60	50	0	0	50	1.00
1858214--1858267	20	2.4	23	76	17	60	53	3	0	42	1.18
1874362--1874399	20	1.9	20	88	0	58	26	5	10	57	1.53
1874437--1874476	21	2.0	20	85	9	55	27	5	5	62	1.37
1874542--1874572	12	2.7	12	95	5	55	22	6	0	70	1.09
1877509--1877553	22	2.0	22	95	0	81	31	26	13	28	1.94
1883316--1883359	22	2.0	22	86	8	63	2	40	0	56	1.11
1887050--1887094	3	15.0	3	100	0	90	66	0	0	33	0.92
1887525--1887552	2	14.0	2	100	0	56	50	0	0	50	1.00
1888900--1888924	12	2.1	12	100	0	50	36	32	8	24	1.84
1893774--1893864	46	2.0	47	88	2	139	38	24	4	32	1.75
1894104--1894135	16	2.0	16	100	0	64	50	12	12	25	1.75
1900676--1900742	32	2.1	32	82	0	80	53	2	2	40	1.31
1902731--1902765	13	2.8	12	87	8	52	48	0	0	51	1.00
1902745--1902820	33	2.3	32	82	8	91	50	0	2	47	1.15
1903256--1903319	29	2.2	29	86	5	94	39	0	6	54	1.26
1906837--1906882	2	23.5	2	86	4	67	47	4	0	47	1.21
1908209--1908238	15	1.9	15	93	6	51	66	0	3	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1914866--1914898	3	11.0	3	100	0	66	33	0	0	66	0.92
1916177--1916235	23	2.5	25	76	20	65	42	0	0	57	0.98
1916350--1916407	22	2.6	22	100	0	116	37	5	13	43	1.67
1916350--1916410	11	5.5	11	68	0	50	37	6	14	40	1.72
1921973--1921998	10	2.6	10	100	0	52	0	42	7	50	1.31
1925644--1925677	16	2.1	16	94	0	59	47	20	14	17	1.83
1928960--1928999	5	8.2	5	83	5	55	2	20	2	75	1.04
1928961--1928999	14	2.7	14	92	4	60	2	20	2	74	1.06
1929169--1929193	3	8.3	3	100	0	50	68	0	0	32	0.90
1930758--1930812	22	2.4	23	87	6	76	61	1	0	36	1.06
1931032--1931089	27	2.2	26	84	6	73	53	0	3	43	1.17
1931357--1931410	24	2.3	23	75	9	54	50	1	3	44	1.30
1940662--1940736	24	3.2	24	62	17	57	64	17	9	9	1.49
1940656--1940751	47	2.0	47	97	0	183	65	16	9	8	1.45
1942515--1942561	23	2.0	24	87	4	69	40	0	0	59	0.97
1944867--1944913	24	2.0	24	82	0	58	36	2	0	61	1.08
1945971--1946030	22	2.8	21	84	5	75	53	1	1	43	1.20
1946327--1946765	156	2.8	156	95	1	785	37	18	14	29	1.90
1946794--1946823	15	1.9	15	93	6	51	80	6	0	13	0.91
1946794--1946824	16	1.9	16	93	0	53	80	6	0	12	0.89
1946829--1946869	15	2.8	15	85	3	57	4	26	46	21	1.72
1947082--1947126	19	2.4	19	84	0	63	22	20	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1948022--1948062	6	7.0	6	78	15	50	12	0	4	82	0.81
1948036--1948130	1	95.0	1	75	0	73	5	0	8	86	0.71
1948023--1948125	23	4.5	23	78	20	101	6	0	8	84	0.78
1948029--1948131	40	2.6	38	85	10	134	5	0	9	84	0.77
1948023--1948130	14	7.6	14	79	6	110	6	0	8	85	0.75
1948024--1948129	47	2.2	49	80	13	130	6	0	8	84	0.76
1948138--1948831	40	17.0	40	88	6	848	37	22	17	22	1.94
1948138--1948831	82	8.5	81	92	4	980	37	22	17	22	1.94
1948138--1948831	123	5.7	120	89	6	979	37	22	17	22	1.94
1950018--1950048	8	3.9	8	91	0	53	9	16	0	74	1.07
1953715--1954312	156	3.8	156	97	0	1115	37	18	14	29	1.90
1954347--1954382	13	2.8	13	95	0	63	86	5	0	8	0.72
1954642--1954686	18	2.3	20	88	7	67	20	22	33	24	1.97
1954749--1954817	31	2.3	31	82	7	88	24	24	26	24	2.00
1955389--1955415	3	9.0	3	100	0	54	66	0	0	33	0.92
1956199--1956255	25	2.3	25	75	6	62	49	1	3	45	1.29
1958211--1958272	31	2.1	29	82	11	72	37	6	3	53	1.43
1958202--1958266	26	2.5	26	82	12	71	35	6	3	55	1.40
1959277--1959338	21	2.9	21	85	7	81	38	1	1	58	1.18
1963107--1963150	22	2.0	22	100	0	88	22	9	27	40	1.84
1971103--1971145	22	1.9	23	85	4	61	34	4	4	55	1.41
1972476--1972531	20	2.8	20	76	20	62	64	8	0	26	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1973562--1973602	9	4.2	10	87	6	50	31	0	2	65	1.05
1974822--1974856	12	2.9	12	91	0	52	48	0	0	51	1.00
1975594--1975663	6	11.8	6	73	8	54	62	1	2	32	1.18
1976362--1976386	13	1.9	13	100	0	50	52	0	0	48	1.00
1976271--1976413	30	5.0	26	72	15	88	51	2	0	46	1.12
1990965--1991016	17	3.0	17	91	2	77	36	15	21	26	1.93
1995539--1995569	2	15.5	2	100	0	62	51	0	0	48	1.00
1997629--1997661	16	2.1	16	94	0	57	30	24	9	36	1.86
1999949--2000193	127	1.9	127	94	0	427	40	18	9	32	1.82
2006322--2006400	26	3.1	25	72	18	72	62	1	0	36	1.04
2006376--2006431	22	2.5	22	80	8	60	64	7	1	26	1.29
2006672--2006714	20	2.3	18	84	8	50	32	2	0	65	1.06
2007478--2007519	19	2.2	20	83	8	52	61	0	0	38	0.96
2009291--2009316	9	2.9	9	100	0	52	46	34	19	0	1.50
2017919--2017957	11	3.5	11	85	3	51	56	0	2	41	1.13
2032115--2032166	18	2.8	17	75	13	50	53	0	0	46	1.00
2032308--2032357	19	2.7	19	73	14	50	46	4	2	48	1.32
2036062--2036154	15	6.4	15	72	14	79	53	1	2	43	1.19
2036026--2036110	18	5.2	18	77	16	78	55	1	1	42	1.15
2036026--2036176	32	4.9	31	71	11	114	52	1	1	43	1.20
2036044--2036176	32	4.3	33	71	18	115	53	1	2	42	1.22
2036035--2036121	30	2.8	31	81	10	97	55	2	1	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2036245--2036300	17	3.4	17	74	18	55	46	0	1	51	1.11
2036269--2036322	26	2.1	26	86	6	74	40	0	3	55	1.17
2044670--2044725	29	1.9	29	85	0	76	39	5	8	46	1.58
2048744--2048768	12	2.1	12	100	0	50	0	16	0	84	0.63
2059193--2059232	7	5.7	7	88	8	55	70	0	0	30	0.88
2059319--2059344	12	2.2	12	100	0	52	46	0	0	53	1.00
2059448--2059531	41	2.0	41	88	4	123	58	2	1	38	1.19
2059491--2059527	18	2.1	18	90	10	58	56	2	0	40	1.13
2071670--2071707	2	19.0	2	94	0	67	0	50	2	47	1.15
2081680--2081748	30	2.3	29	79	18	79	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195