genome.fa.s112.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  104  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18525206--18525347	10	15.4	9	68	23	57	20	4	2	71	1.17
18525261--18525342	39	2.1	39	82	13	98	14	7	1	76	1.05
18525350--18525648	119	2.5	120	89	5	446	46	8	11	33	1.70
18525350--18525648	59	5.0	60	90	3	446	46	8	11	33	1.70
18526512--18526745	115	2.0	116	98	0	452	33	17	16	32	1.93
18529680--18529734	7	7.9	7	82	9	60	81	0	14	3	0.82
18529679--18529716	20	1.9	20	88	0	58	84	0	15	0	0.63
18529684--18529732	18	2.8	17	82	17	64	81	0	14	4	0.83
18529682--18529716	9	3.7	9	88	11	52	85	0	14	0	0.59
18531734--18531786	26	2.0	26	96	0	97	26	18	26	28	1.98
18532628--18532680	26	2.0	26	96	0	97	28	20	24	26	1.99
18530240--18533555	901	3.7	897	87	3	4643	25	23	24	25	2.00
18532807--18535687	720	4.1	700	83	6	3537	26	22	23	27	2.00
18534821--18542782	874	9.1	872	83	6	9388	25	24	24	25	2.00
18539913--18539951	19	2.1	18	85	4	51	25	58	10	5	1.51
18540073--18540126	26	2.1	26	89	0	81	25	18	27	27	1.98
18536521--18542714	903	7.0	902	83	6	6867	25	24	24	25	2.00
18543381--18543457	26	3.0	26	98	0	145	27	16	27	28	1.97
18542664--18545944	917	3.7	896	85	5	4112	25	23	24	26	2.00
18543432--18545943	898	2.8	878	85	4	3411	25	23	25	26	2.00
18545983--18546035	26	2.0	26	96	0	97	28	20	24	26	1.99
18546891--18546995	26	4.0	26	96	0	192	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18545983--18547925	956	2.0	956	91	2	3110	25	24	25	25	2.00
18547847--18547925	26	3.0	26	94	0	140	25	18	27	27	1.98
18555245--18555297	26	2.0	26	92	0	88	26	20	24	28	1.99
18553743--18556374	899	2.9	891	86	3	3473	25	23	24	25	2.00
18556261--18556553	162	1.8	157	83	7	383	20	28	32	18	1.96
18556335--18560658	889	4.8	895	85	3	5503	25	24	25	25	2.00
18559907--18561383	772	1.9	768	86	3	2121	26	22	24	26	2.00
18561509--18561561	26	2.0	26	92	7	90	26	16	26	30	1.97
18562411--18562463	26	2.0	26	96	0	97	26	18	26	28	1.98
18563094--18563149	26	2.2	26	96	0	103	28	19	21	30	1.98
18561971--18563332	683	2.0	680	88	1	1992	25	25	24	23	2.00
18563894--18563926	11	3.0	11	95	0	57	18	33	27	21	1.96
18564894--18564947	26	2.1	26	92	0	90	25	20	27	25	1.99
18562652--18568036	876	6.1	877	82	6	6153	25	23	24	26	2.00
18565780--18565830	26	2.0	26	88	0	75	29	11	29	29	1.92
18568288--18568340	26	2.0	26	100	0	106	26	20	26	26	1.99
18568990--18569071	26	3.2	26	98	0	155	28	19	24	28	1.99
18569915--18569965	26	2.0	26	100	0	102	27	15	27	29	1.96
18570807--18570857	26	2.0	26	96	0	93	29	15	27	27	1.96
18568591--18574412	898	6.5	896	85	4	7383	25	24	24	25	2.00
18573641--18575130	720	2.1	720	89	2	2267	26	23	24	26	2.00
18575104--18575156	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18575977--18576034	26	2.2	27	93	3	100	27	20	24	27	1.99
18576162--18576214	26	2.0	26	85	0	70	28	18	22	30	1.98
18577296--18577348	26	2.0	26	92	0	88	30	20	22	26	1.98
18579069--18579121	26	2.0	26	85	0	70	28	18	24	28	1.98
18579974--18580024	26	2.0	26	96	0	93	29	15	27	27	1.96
18576216--18580884	905	5.2	892	83	6	5241	25	24	24	25	2.00
18580406--18580457	26	2.0	26	84	0	68	25	9	15	50	1.74
18581475--18581507	11	3.0	11	100	0	66	18	36	27	18	1.94
18582858--18582901	19	2.3	19	100	0	88	34	22	13	29	1.93
18581724--18584662	730	4.1	711	85	5	3687	25	23	23	26	2.00
18584637--18584688	26	2.0	25	92	3	86	26	23	23	26	2.00
18585717--18585768	26	2.0	26	88	3	79	26	21	23	28	1.99
18586797--18586849	26	2.0	26	92	0	88	24	18	26	30	1.98
18588405--18588457	26	2.0	26	88	0	79	30	18	22	28	1.98
18588568--18591458	703	4.1	715	85	4	3780	26	23	24	26	2.00
18591432--18591484	26	2.0	26	96	0	97	32	20	20	26	1.98
18592334--18592386	26	2.0	26	92	0	88	30	20	22	26	1.98
18590688--18594165	907	3.9	898	84	4	4383	25	23	24	26	2.00
18594115--18594194	26	3.1	26	92	0	133	28	18	26	26	1.98
18593484--18594922	758	1.9	758	86	2	2079	26	21	23	28	1.99
18595764--18595815	26	2.0	26	88	0	77	30	17	23	28	1.97
18594243--18601169	902	7.7	904	85	2	8714	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18597567--18597619	26	2.0	26	92	0	88	28	18	24	28	1.98
18599371--18599423	26	2.0	26	92	0	88	28	18	24	28	1.98
18601553--18601598	24	1.9	24	100	0	92	32	26	21	19	1.97
18600429--18603311	714	4.1	712	87	2	3813	26	23	24	26	2.00
18602267--18602312	24	1.9	24	100	0	92	32	26	21	19	1.97
18604156--18604208	26	2.0	26	92	0	88	28	18	24	28	1.98
18604743--18604791	24	2.0	24	96	0	89	30	26	22	20	1.98
18605981--18608109	706	3.0	705	88	2	3101	25	23	23	27	2.00
18609833--18609885	26	2.0	26	96	0	97	30	22	24	22	1.99
18607320--18618956	906	13.1	902	85	4	14308	25	24	24	25	2.00
18611610--18611661	26	2.0	25	92	3	86	28	19	25	26	1.98
18612505--18612557	26	2.0	26	85	0	70	26	18	22	32	1.97
18607320--18618760	874	12.9	871	84	6	12804	25	24	24	25	2.00
18614285--18614337	26	2.0	26	92	0	88	30	20	22	26	1.98
18615175--18615227	26	2.0	26	96	0	97	26	20	24	28	1.99
18616066--18616118	26	2.0	26	96	0	97	28	20	24	26	1.99
18616961--18617013	26	2.0	26	96	0	97	28	16	26	28	1.97
18610739--18618956	902	9.2	896	85	5	9748	25	24	24	25	2.00
18617863--18617915	26	2.0	26	92	0	88	28	18	24	28	1.98
18619788--18619840	26	2.0	26	92	0	88	26	18	24	30	1.98
18621738--18621790	26	2.0	26	92	0	88	28	18	22	30	1.98
18622584--18622636	26	2.0	26	88	0	79	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18623488--18623540	26	2.0	26	96	0	97	28	20	24	26	1.99
18623296--18623785	245	2.0	245	84	4	650	24	32	24	19	1.98
18624220--18624272	26	2.0	26	92	0	88	28	18	24	28	1.98
18626896--18626948	26	2.0	26	92	0	88	24	18	28	28	1.98
18627791--18627843	26	2.0	26	92	0	88	28	18	24	28	1.98
18624238--18647646	877	26.1	880	78	9	18761	25	24	24	25	2.00
18630424--18630475	26	2.0	26	96	0	95	28	19	25	26	1.98
18631321--18631373	26	2.0	26	88	0	79	28	18	22	30	1.98
18633608--18633660	26	2.0	26	100	0	106	26	20	26	26	1.99
18635206--18635258	26	2.0	26	100	0	106	26	20	26	26	1.99
18635941--18635991	26	2.0	26	96	0	93	29	19	27	23	1.98
18639483--18639535	26	2.0	26	92	0	88	26	20	26	26	1.99
18640393--18640443	26	2.0	26	96	0	93	27	17	25	29	1.98
18642158--18642205	25	1.9	25	95	0	87	27	20	25	27	1.99
18643066--18643118	26	2.0	26	92	0	88	28	18	24	28	1.98
18645708--18645760	26	2.0	26	96	0	97	28	20	24	26	1.99
18636831--18647646	906	12.1	898	86	4	14047	25	24	24	25	2.00
18646607--18646659	26	2.0	26	96	0	97	28	20	24	26	1.99
18647514--18647569	26	2.2	26	96	0	103	25	21	25	28	1.99
18648247--18648298	25	2.0	26	92	3	88	28	17	25	28	1.97
18650023--18650075	26	2.0	26	92	0	88	26	16	24	32	1.97
18652692--18652744	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18647606--18654553	889	7.8	900	86	4	9168	24	23	25	26	2.00
18653581--18653633	26	2.0	26	92	0	88	26	20	26	26	1.99
18654470--18654522	26	2.0	26	92	0	88	26	22	22	28	1.99
18655208--18655260	26	2.0	26	100	0	106	26	16	26	30	1.97
18654496--18659205	878	5.3	874	85	5	5901	25	23	25	25	2.00
18657852--18657902	26	2.0	26	92	0	84	31	19	23	25	1.98
18656974--18659205	897	2.5	896	87	1	3072	24	24	25	25	2.00
18659679--18659838	58	2.8	58	91	3	268	35	11	6	46	1.66
18659871--18659931	11	5.5	11	78	5	61	80	1	4	13	0.95
18659874--18659931	21	2.8	20	82	10	71	81	1	5	12	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195