genome.fa.s112.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  62  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12468928--12468975	13	3.8	13	88	2	71	27	10	8	54	1.63
12468921--12468981	13	4.8	13	85	2	70	22	8	16	52	1.70
12469127--12469218	15	6.3	15	67	12	57	27	1	1	70	1.01
12475095--12475124	14	2.2	13	94	5	51	76	6	6	10	1.15
12495803--12495913	51	2.2	51	96	0	204	20	11	30	36	1.89
12495806--12495888	27	3.2	27	65	16	75	19	13	28	38	1.89
12503322--12503564	123	2.0	123	88	0	360	30	10	14	44	1.79
12504586--12504628	22	2.0	21	86	4	59	58	9	6	25	1.54
12508191--12508243	12	4.4	12	90	0	70	62	18	0	18	1.33
12508197--12508271	21	3.6	21	74	13	82	60	20	0	20	1.37
12508194--12508261	15	4.8	14	71	21	52	60	17	0	22	1.36
12508224--12508263	18	2.2	18	90	0	62	57	20	0	22	1.41
12508798--12508872	38	2.0	38	89	5	116	37	20	5	37	1.75
12509449--12509481	3	11.0	3	100	0	66	66	0	0	33	0.92
12509596--12509626	2	15.5	2	100	0	62	51	0	48	0	1.00
12510297--12510368	35	2.0	36	94	2	128	50	6	1	41	1.38
12511230--12511507	125	2.2	124	81	6	312	37	14	16	32	1.89
12511150--12511631	64	7.7	62	74	10	340	36	13	17	32	1.89
12511324--12511683	127	2.9	127	79	7	319	36	12	16	33	1.87
12511312--12511712	127	3.2	127	78	8	313	37	13	15	33	1.87
12511312--12511714	125	3.2	127	78	8	312	37	13	15	33	1.87
12511729--12511800	35	2.1	35	94	0	126	30	9	22	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12516057--12516290	62	3.8	62	76	6	233	40	11	14	33	1.83
12518885--12518973	8	10.8	8	78	15	69	24	1	2	71	1.04
12518924--12518959	10	3.5	11	82	17	51	33	0	0	66	0.92
12518929--12518996	26	2.6	26	79	9	66	33	0	1	64	1.02
12519379--12519421	11	3.9	10	78	21	50	0	4	9	86	0.71
12519379--12519421	12	3.7	12	84	9	54	0	4	9	86	0.71
12519584--12519650	29	2.3	30	84	7	93	25	13	23	37	1.92
12519624--12520016	33	11.9	33	70	10	151	31	15	18	34	1.92
12519623--12519852	66	3.5	65	76	8	214	32	16	16	33	1.92
12519594--12519816	33	6.9	32	71	11	118	32	16	17	33	1.93
12519623--12519878	133	1.9	130	82	6	318	33	16	17	32	1.92
12519624--12519916	133	2.2	131	80	8	308	33	16	16	33	1.92
12519764--12519954	99	1.9	100	84	1	258	33	14	18	32	1.92
12520038--12520131	32	2.9	32	72	12	93	26	12	22	38	1.90
12520154--12520265	32	3.5	32	75	8	93	29	14	20	35	1.92
12519922--12520248	116	2.8	116	96	0	593	28	14	21	36	1.92
12520172--12520310	33	4.2	32	73	14	97	31	12	15	39	1.86
12520357--12520475	32	3.7	31	76	13	98	35	20	14	30	1.92
12520420--12520527	54	2.0	54	83	0	135	33	15	15	35	1.90
12521047--12521080	8	4.4	8	85	7	52	11	2	0	85	0.71
12521047--12521078	15	2.1	15	94	0	55	9	3	0	87	0.64
12521385--12521416	11	2.9	11	90	0	55	6	9	0	84	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12521385--12521428	22	2.0	22	82	8	54	9	11	0	79	0.93
12525828--12525854	14	1.9	14	100	0	54	0	18	0	81	0.69
12525824--12525868	23	2.0	22	86	4	63	2	17	2	77	0.97
12527965--12528087	50	2.4	50	78	11	124	37	8	6	47	1.61
12530080--12530116	17	2.2	17	90	9	58	2	0	10	86	0.67
12530126--12530208	35	2.5	32	79	14	87	34	1	1	62	1.11
12532719--12532759	18	2.4	18	88	8	59	2	19	0	78	0.87
12532722--12532761	20	1.9	22	90	10	66	2	20	0	77	0.88
12535637--12535891	84	3.0	83	80	9	293	34	4	11	49	1.58
12540441--12540467	12	2.2	12	100	0	54	77	0	7	14	0.97
12541567--12541673	55	1.9	55	94	0	187	36	10	14	38	1.81
12541771--12542188	145	2.9	144	83	6	447	39	11	13	34	1.81
12543470--12543549	14	6.3	13	72	13	60	18	0	2	78	0.86
12543479--12543523	6	7.7	6	79	20	51	13	0	2	84	0.72
12543472--12543544	21	3.7	20	74	20	64	19	0	2	78	0.88
12543470--12543525	16	3.2	17	79	20	55	12	0	3	83	0.76
12543479--12543522	17	2.6	16	89	10	61	13	0	2	84	0.73
12543479--12543549	23	3.1	22	80	10	72	19	0	1	78	0.82
12543470--12543549	37	2.1	39	84	9	103	18	0	2	78	0.86
12547506--12547535	15	1.9	16	93	6	53	80	0	20	0	0.72
12547523--12547559	10	3.8	10	89	7	58	78	0	16	5	0.93
12548769--12548822	3	17.7	3	85	11	74	66	0	1	31	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12548773--12548812	20	2.0	21	95	5	73	65	0	0	35	0.93
12548769--12548850	17	4.7	18	77	18	68	69	1	2	26	1.08
12548831--12548879	5	9.8	5	82	8	64	77	0	6	16	0.96
12548830--12548880	24	2.2	23	89	10	77	78	0	5	15	0.93
12548767--12548880	46	2.4	47	76	12	110	71	0	3	23	1.06
12549778--12550034	86	3.0	86	80	3	248	45	15	12	27	1.81
12549775--12550035	43	6.1	42	76	5	209	45	14	12	26	1.81
12550232--12550519	64	4.5	64	80	1	324	44	10	21	23	1.83
12550232--12550505	65	4.2	64	82	1	314	44	10	21	23	1.83
12550232--12550519	129	2.2	129	86	0	396	44	10	21	23	1.83
12550695--12550841	17	8.6	17	74	1	96	30	8	22	38	1.85
12550718--12550808	34	2.7	34	82	0	110	30	6	25	37	1.81
12550700--12550824	51	2.4	52	81	1	137	32	9	21	36	1.86
12551241--12551291	23	2.2	24	89	3	77	49	7	7	35	1.61
12552581--12552611	16	1.9	16	93	0	53	9	6	0	83	0.79
12553693--12553784	45	2.0	46	91	2	150	30	11	26	31	1.92
12555164--12555222	21	2.8	21	84	0	82	62	10	5	22	1.46
12556616--12556659	19	2.3	19	84	7	54	68	0	6	25	1.14
12556635--12556706	24	2.8	24	78	14	65	70	4	4	20	1.21
12556662--12556718	30	1.9	29	86	10	80	71	7	5	15	1.25
12561351--12561379	10	2.7	11	89	10	51	17	10	0	72	1.11
12562264--12562314	26	2.0	26	92	0	84	82	0	13	3	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12562261--12562316	9	6.4	9	79	8	62	80	0	16	3	0.85
12565435--12565464	10	3.1	10	95	4	53	93	0	6	0	0.35
12565514--12565538	12	2.1	12	100	0	50	76	0	24	0	0.80
12565562--12565602	21	2.0	21	90	4	66	70	0	29	0	0.87
12568170--12568588	131	3.2	129	78	6	413	38	7	9	44	1.65
12568596--12568649	14	3.8	15	75	20	62	31	0	3	64	1.11
12568592--12568688	28	3.6	28	75	18	107	27	2	6	63	1.29
12576210--12576243	3	11.3	3	100	0	68	67	0	0	32	0.91
12577948--12578004	20	3.1	18	80	7	62	15	0	35	49	1.45
12577991--12578056	27	2.4	27	85	5	80	19	1	33	45	1.60
12577989--12578068	34	2.3	35	83	8	94	20	1	32	46	1.58
12577995--12578068	27	2.7	28	77	8	73	20	1	32	45	1.59
12579889--12579927	20	2.0	20	89	0	60	30	12	12	43	1.81
12580253--12580303	23	2.2	23	82	0	57	5	3	9	80	1.01
12580532--12580602	35	2.0	36	86	2	99	32	14	15	38	1.87
12580675--12580836	40	4.1	39	76	5	130	37	11	12	38	1.79
12580709--12580853	40	3.6	39	76	11	125	36	11	11	40	1.77
12580725--12580875	40	3.8	40	73	13	125	36	9	13	40	1.78
12581500--12581545	23	2.0	23	83	8	58	15	23	4	56	1.57
12582662--12582749	5	17.4	5	71	19	51	2	19	1	77	0.94
12582661--12582762	19	5.8	17	72	19	68	2	19	0	76	0.97
12582661--12582699	17	2.3	18	91	8	64	0	12	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12582661--12582731	18	3.9	17	79	15	63	1	18	1	78	0.89
12582715--12582762	23	2.1	23	84	3	62	4	22	0	72	1.01
12582710--12582762	22	2.4	22	80	3	61	3	22	0	73	0.99
12583916--12583962	19	2.4	20	85	3	60	2	12	4	80	0.94
12586214--12586545	167	2.0	167	89	1	513	40	9	16	33	1.81
12586645--12586685	21	1.9	22	85	5	57	36	2	17	43	1.62
12587023--12587082	30	2.0	30	96	0	111	43	11	13	31	1.80
12587577--12587627	26	2.0	26	92	0	84	43	13	11	31	1.80
12587614--12587811	37	5.4	37	78	10	145	33	11	21	33	1.89
12588786--12588850	25	2.6	25	82	4	69	55	3	9	32	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195