genome.fa.s112.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  85  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16031062--16032559	710	2.1	710	87	3	2128	26	23	24	26	2.00
16031794--16034366	903	2.8	899	88	2	3739	25	24	24	24	2.00
16033608--16036532	735	4.0	717	86	4	3908	26	24	22	25	2.00
16037527--16037579	26	2.0	26	96	0	97	32	26	15	26	1.95
16038420--16038469	26	1.9	26	95	0	91	22	24	24	30	1.99
16035723--16040104	898	4.9	897	83	4	5206	25	24	23	25	2.00
16040934--16040984	26	2.0	26	96	0	93	29	23	17	29	1.97
16040850--16041952	590	1.9	589	88	1	1701	21	24	26	27	1.99
16043316--16043368	26	2.0	26	100	0	106	26	26	20	26	1.99
16041359--16053261	896	13.2	899	77	10	10535	25	24	24	25	2.00
16046820--16046872	26	2.0	26	92	0	88	26	22	22	28	1.99
16047533--16047893	159	2.3	157	82	4	406	21	26	27	24	1.99
16049650--16049702	26	2.0	26	92	0	88	30	24	20	24	1.99
16051420--16051472	26	2.0	26	92	0	88	26	24	18	30	1.98
16052327--16052379	26	2.0	26	92	0	88	28	24	18	28	1.98
16053103--16053459	185	1.9	185	87	2	529	21	29	27	21	1.98
16053387--16053439	26	2.0	26	96	0	97	30	28	16	24	1.97
16056666--16056718	26	2.0	26	92	0	88	28	24	18	28	1.98
16057496--16057548	26	2.0	26	92	0	88	30	26	16	26	1.97
16055911--16057570	830	2.0	832	87	3	2378	26	25	22	24	2.00
16061378--16061430	26	2.0	26	96	0	97	26	24	20	28	1.99
16062962--16063015	26	2.1	26	96	0	99	25	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16061876--16070033	897	9.1	892	86	3	10784	25	24	24	25	2.00
16063867--16063919	26	2.0	26	96	0	97	26	24	20	28	1.99
16064111--16064139	13	2.2	13	100	0	58	17	34	13	34	1.89
16064775--16064827	26	2.0	26	96	0	97	26	24	20	28	1.99
16065670--16065720	26	2.0	26	88	0	75	29	21	17	31	1.96
16066555--16066607	26	2.0	26	96	0	97	26	24	20	28	1.99
16067458--16067510	26	2.0	26	100	0	106	26	26	20	26	1.99
16069255--16069304	26	1.9	26	95	0	91	28	26	18	28	1.98
16070674--16071041	159	2.3	158	83	3	461	17	27	31	23	1.96
16071015--16071067	26	2.0	26	96	0	97	26	24	20	28	1.99
16072399--16072451	26	2.0	26	92	0	88	26	26	20	26	1.99
16073290--16073342	26	2.0	26	92	7	90	26	28	18	26	1.98
16071564--16074808	887	3.7	881	85	6	4028	26	24	23	26	2.00
16074976--16076455	719	2.1	716	89	4	2279	26	24	23	25	2.00
16076559--16076611	26	2.0	26	96	0	97	26	24	20	28	1.99
16076401--16076817	185	2.3	185	86	2	581	22	28	27	21	1.99
16076744--16076796	26	2.0	26	88	0	79	28	24	20	26	1.99
16078113--16078169	26	2.2	26	84	6	71	59	3	8	28	1.44
16078531--16078583	26	2.0	26	88	0	79	24	24	24	26	2.00
16076591--16082312	893	6.4	897	87	3	7114	25	24	24	25	2.00
16079424--16079476	26	2.0	26	88	0	79	26	24	22	26	2.00
16080326--16080376	26	2.0	26	96	0	93	29	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16081221--16081273	26	2.0	26	92	0	88	24	24	22	28	2.00
16083480--16084876	705	2.0	703	89	2	2142	27	23	23	26	2.00
16085087--16085138	26	2.0	26	84	0	68	28	21	19	30	1.97
16086865--16086917	26	2.0	26	96	0	97	26	24	20	28	1.99
16089503--16089555	26	2.0	26	100	0	106	26	26	20	26	1.99
16084136--16092937	877	10.0	881	84	5	10019	25	24	24	25	2.00
16092151--16092203	26	2.0	26	96	0	97	26	20	20	32	1.98
16093752--16093802	26	2.0	26	92	0	84	29	27	15	27	1.96
16094299--16094348	25	2.0	26	92	4	84	28	22	20	30	1.98
16095204--16095254	26	2.0	26	92	0	84	27	27	15	29	1.96
16096097--16096147	26	2.0	26	92	7	86	29	23	15	31	1.95
16093808--16097434	900	4.0	899	86	3	4745	26	25	23	25	2.00
16096997--16097049	26	2.0	26	88	0	79	28	22	18	30	1.98
16098255--16098307	26	2.0	26	96	0	97	24	26	20	28	1.99
16099166--16099218	26	2.0	26	100	0	106	26	26	20	26	1.99
16100055--16100107	26	2.0	26	82	7	63	33	22	15	28	1.94
16098056--16103656	902	6.3	898	85	3	7238	25	25	23	25	2.00
16098056--16103656	899	6.3	898	85	3	7220	25	25	23	25	2.00
16101844--16101896	26	2.0	26	100	0	106	26	26	20	26	1.99
16102725--16102776	26	2.0	26	88	0	77	28	23	17	30	1.97
16103828--16103906	26	3.0	26	90	0	113	30	22	17	29	1.97
16105620--16105698	26	3.0	26	85	3	97	29	21	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16106301--16106354	26	2.1	26	96	0	99	27	24	20	27	1.99
16107204--16107264	26	2.4	26	84	10	74	22	26	18	32	1.97
16108171--16108220	26	1.9	26	91	0	82	24	24	18	34	1.96
16109081--16109133	26	2.0	26	92	0	88	30	24	18	26	1.98
16109940--16110018	26	3.0	26	96	0	140	27	26	20	25	1.99
16111713--16111765	26	2.0	26	96	0	97	26	24	20	28	1.99
16112376--16114600	903	2.5	890	88	2	3228	25	24	24	25	2.00
16114846--16114898	26	2.0	26	92	0	88	26	18	20	33	1.96
16113938--16115993	710	2.9	707	88	3	2996	22	25	26	26	2.00
16115556--16115608	26	2.0	26	92	0	88	26	26	18	28	1.98
16116281--16116331	26	2.0	26	92	0	84	27	21	17	33	1.96
16119318--16119370	26	2.0	26	88	0	79	28	20	20	30	1.98
16120491--16122534	857	2.4	843	84	7	2566	26	24	22	26	2.00
16121866--16123338	712	2.1	712	88	2	2222	26	24	23	25	2.00
16123455--16123507	26	2.0	26	92	0	88	28	24	18	28	1.98
16125058--16125110	26	2.0	26	92	0	88	26	22	20	30	1.98
16124159--16127541	876	3.9	872	84	5	4176	26	24	23	25	2.00
16126799--16126851	26	2.0	26	96	0	97	32	26	15	26	1.95
16129740--16129789	26	1.9	26	91	0	82	32	24	14	30	1.94
16130596--16130648	26	2.0	26	96	0	97	28	24	20	26	1.99
16130622--16131059	220	2.0	221	85	2	585	19	25	32	22	1.97
16131752--16132397	221	3.0	218	85	3	843	18	24	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16132711--16132763	26	2.0	26	92	0	88	26	22	20	30	1.98
16134609--16135216	221	2.8	219	86	3	803	19	24	32	23	1.98
16135528--16135580	26	2.0	26	92	0	88	26	22	20	30	1.98
16139150--16139199	26	1.9	26	91	0	82	26	24	20	30	1.98
16136459--16142478	873	6.8	894	85	4	7828	26	24	23	25	2.00
16140049--16140101	26	2.0	26	92	0	88	30	24	18	26	1.98
16141811--16141861	26	2.0	26	92	0	84	31	27	11	29	1.92
16150130--16150182	26	2.0	26	92	0	88	28	24	18	28	1.98
16149254--16151491	875	2.5	892	87	3	3171	25	24	24	25	2.00
16148209--16151491	868	3.7	874	86	3	4530	25	24	24	25	2.00
16152707--16152763	26	2.2	26	90	0	96	33	19	17	29	1.95
16153463--16153529	26	2.5	26	92	2	107	52	13	8	25	1.69
16154846--16156219	687	2.0	689	87	3	2000	26	23	23	26	2.00
16157255--16157307	26	2.0	26	92	0	88	28	28	18	24	1.98
16155636--16159349	885	4.2	877	84	5	4673	26	24	23	25	2.00
16158134--16158193	26	2.4	26	80	5	79	31	23	20	25	1.98
16159018--16159070	26	2.0	26	96	0	97	30	28	16	24	1.97
16160445--16160497	26	2.0	26	88	0	79	32	24	16	26	1.97
16161345--16161397	26	2.0	26	92	0	88	28	24	18	28	1.98
16159707--16162185	899	2.8	898	86	1	3507	26	23	23	25	2.00
16162847--16162899	26	2.0	26	92	0	88	26	22	20	30	1.98
16163733--16163785	26	2.0	26	89	7	81	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16162505--16165008	898	2.8	884	86	3	3374	25	25	23	25	2.00
16164632--16164684	26	2.0	26	88	0	79	26	24	18	30	1.98
16165877--16165927	26	2.0	26	92	0	84	27	29	15	27	1.96
16167613--16167663	26	2.0	26	100	0	102	27	29	15	27	1.96
16168771--16168823	26	2.0	26	92	0	88	26	22	20	30	1.98
16169667--16169719	26	2.0	26	96	0	97	26	28	18	26	1.98
16170909--16170961	26	2.0	26	96	0	97	26	24	20	28	1.99
16173398--16173450	26	2.0	26	96	0	97	28	26	18	26	1.98
16172627--16174159	739	2.1	739	88	1	2299	26	24	22	26	2.00
16175168--16175220	26	2.0	26	92	0	88	30	26	16	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195