genome.fa.s112.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  189  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33638997--33639028	11	2.9	11	95	0	55	25	0	0	75	0.81
33639945--33639969	2	12.5	2	100	0	50	48	0	0	52	1.00
33641661--33641700	21	1.9	21	85	10	55	50	2	2	45	1.28
33647876--33647945	32	2.2	31	89	2	104	40	5	14	40	1.69
33654196--33654227	6	5.3	6	92	0	55	78	0	0	21	0.76
33655012--33655049	15	2.7	14	84	8	51	7	7	7	76	1.17
33655454--33655492	19	2.1	19	85	9	53	56	12	5	25	1.57
33666010--33666057	3	16.0	3	95	0	87	35	31	0	33	1.58
33677482--33677557	40	1.9	39	89	2	116	43	14	14	27	1.84
33692836--33692901	23	2.9	23	79	20	61	50	0	0	50	1.00
33692895--33692949	24	2.2	25	78	9	60	45	1	0	52	1.11
33705853--33705879	2	13.5	2	100	0	54	48	0	0	51	1.00
33715676--33715705	2	15.5	2	93	6	53	0	0	50	50	1.00
33717021--33717056	3	12.0	3	100	0	72	66	0	0	33	0.92
33718576--33718613	14	2.6	14	87	4	58	52	0	0	47	1.00
33718986--33719038	27	2.0	27	85	14	74	49	7	3	39	1.49
33723343--33723378	15	2.4	15	100	0	72	8	19	36	36	1.82
33728347--33728378	14	2.3	14	94	0	55	84	0	9	6	0.78
33728454--33728483	15	2.0	15	100	0	60	40	13	13	33	1.83
33729847--33729916	27	2.7	27	78	10	74	60	1	0	38	1.06
33734049--33734097	20	2.5	20	82	0	53	40	4	0	55	1.19
33735273--33735302	15	2.1	14	93	6	51	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33736135--33736172	13	3.0	13	80	3	51	47	0	0	52	1.00
33736128--33736197	33	2.1	34	79	12	83	45	0	1	52	1.09
33736135--33736183	23	2.0	25	88	7	75	48	0	0	51	1.00
33736509--33736580	36	2.0	36	97	0	135	33	15	11	40	1.82
33736660--33736703	20	2.2	20	84	12	54	50	4	2	43	1.35
33739007--33739044	17	2.2	18	90	4	60	34	0	0	65	0.93
33745337--33745367	2	15.5	2	100	0	62	48	0	0	51	1.00
33755046--33755070	4	6.2	4	100	0	50	76	0	0	24	0.80
33755342--33755374	10	3.3	10	100	0	66	9	0	0	90	0.44
33756214--33756257	14	3.4	14	73	23	51	34	0	0	65	0.93
33757867--33757938	32	2.3	32	83	7	94	25	25	26	23	2.00
33758518--33758553	15	2.4	16	86	13	51	63	5	5	25	1.38
33763183--33763236	24	2.2	24	86	0	72	51	1	7	38	1.41
33764478--33764512	18	1.9	18	94	0	61	45	5	8	40	1.58
33765588--33765625	16	2.3	17	86	4	51	52	2	0	44	1.14
33771065--33771138	27	2.8	27	95	2	132	36	17	9	36	1.82
33776881--33776921	12	3.5	12	90	9	59	29	2	0	68	1.03
33777712--33777765	22	2.5	21	75	3	54	48	1	0	50	1.11
33778002--33778027	12	2.2	12	100	0	52	53	15	0	30	1.42
33778700--33778742	21	2.0	21	82	8	52	44	2	0	53	1.13
33782204--33782280	11	7.2	11	69	19	56	41	2	2	53	1.28
33782202--33782356	20	7.5	20	70	14	82	37	4	4	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33782219--33782375	20	7.6	19	73	13	91	37	5	5	51	1.48
33782219--33782375	41	3.8	41	74	11	133	37	5	5	51	1.48
33782219--33782523	21	14.7	20	72	13	140	35	6	6	51	1.53
33785464--33785498	14	2.5	14	95	0	61	34	20	20	25	1.96
33787615--33787652	16	2.4	16	86	0	58	42	7	31	18	1.79
33797983--33798034	26	2.0	26	96	0	95	25	38	9	26	1.86
33801089--33801132	21	2.1	21	88	12	65	4	31	0	63	1.14
33801340--33801397	27	2.1	28	90	3	91	29	1	8	60	1.36
33801498--33801535	17	2.2	17	90	9	60	34	2	0	63	1.09
33801493--33801535	17	2.6	17	82	7	54	37	2	0	60	1.10
33801572--33801604	13	2.5	13	90	0	57	57	3	0	39	1.14
33801554--33801617	33	1.9	33	87	12	96	56	3	0	40	1.15
33803586--33803620	18	1.9	18	88	0	52	34	0	14	51	1.42
33805557--33805657	33	3.1	33	95	0	175	43	13	11	30	1.81
33806993--33807034	21	2.0	21	100	0	84	33	28	23	14	1.94
33825936--33825973	18	2.1	18	85	9	51	21	39	0	39	1.53
33829292--33829325	11	3.0	11	87	8	50	47	0	0	52	1.00
33829420--33829456	18	2.0	20	89	10	60	21	8	0	70	1.13
33853706--33853829	46	2.7	45	88	5	176	31	1	22	44	1.63
33874490--33874524	13	2.8	13	91	4	54	37	0	0	62	0.95
33874792--33874831	17	2.3	18	83	12	57	50	10	5	35	1.58
33874596--33875039	244	1.8	243	83	3	588	31	12	10	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33875660--33875713	28	1.9	28	88	0	81	29	16	3	50	1.63
33879670--33879709	17	2.3	18	86	4	55	37	0	2	60	1.11
33880112--33880156	21	2.1	21	84	8	56	31	11	2	55	1.47
33880427--33880481	17	3.4	17	71	19	62	47	0	7	45	1.30
33880424--33880491	32	2.1	32	97	0	127	47	0	7	45	1.31
33880431--33880482	16	3.2	16	70	20	54	46	0	9	44	1.36
33892530--33892556	2	13.5	2	100	0	54	48	0	0	51	1.00
33907443--33907500	27	2.1	27	81	6	64	55	0	0	44	0.99
33907457--33907489	15	2.2	15	89	10	50	51	0	0	48	1.00
33916512--33916662	80	1.9	80	93	5	261	35	21	17	25	1.95
33917642--33917726	41	2.1	41	95	0	152	34	21	4	40	1.74
33919645--33919683	20	2.0	20	84	0	51	2	33	7	56	1.41
33929305--33929433	52	2.5	52	85	10	165	25	17	8	48	1.76
33930199--33930243	21	2.1	21	91	0	72	40	17	0	42	1.50
33945752--33946070	173	1.8	172	90	5	509	40	10	4	45	1.57
33945752--33946078	58	5.7	56	84	7	408	40	9	3	46	1.56
33945752--33946094	115	3.0	114	80	11	410	39	9	4	47	1.55
33947022--33947294	41	6.6	41	78	8	232	39	19	11	28	1.87
33947049--33947300	83	3.0	84	80	3	253	42	18	10	28	1.84
33947305--33947401	42	2.3	42	87	7	135	46	15	11	26	1.80
33947750--33947902	21	7.1	21	78	5	153	36	14	11	37	1.82
33951598--33951641	18	2.4	18	88	0	70	36	11	15	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33952343--33952583	120	2.0	120	95	0	428	35	21	12	30	1.90
33953346--33953549	58	3.5	58	89	4	297	37	11	4	45	1.62
33954099--33954125	12	2.2	12	100	0	54	62	7	0	29	1.22
33954378--33954402	8	3.1	8	100	0	50	28	0	0	72	0.86
33960521--33960559	15	2.7	14	85	14	53	43	2	0	53	1.14
33976255--33976334	39	2.0	40	83	7	101	45	0	2	52	1.14
33976299--33976379	31	2.8	29	77	5	83	48	1	0	50	1.08
33993189--33993252	29	2.2	29	88	0	92	62	1	0	35	1.05
33994838--33994899	30	2.1	30	84	0	79	54	1	0	43	1.09
33995898--33995933	10	3.6	10	96	0	63	41	8	27	22	1.82
34000060--34000096	13	2.8	13	87	4	56	27	5	0	67	1.12
34005290--34005350	31	1.9	32	93	3	106	39	21	13	26	1.90
34008034--34008058	12	2.1	12	100	0	50	8	36	16	40	1.77
34011409--34011455	15	3.1	15	90	0	67	78	0	2	19	0.85
34011414--34011459	4	12.0	4	86	9	69	78	0	0	21	0.76
34011414--34011459	19	2.4	19	92	0	74	78	0	0	21	0.76
34011414--34011458	15	3.0	15	93	0	72	77	0	0	22	0.76
34019130--34019209	39	2.1	39	92	0	133	47	6	6	40	1.54
34020389--34020419	15	2.1	14	94	5	53	16	6	19	58	1.59
34022230--34022256	4	6.8	4	100	0	54	77	0	0	22	0.76
34023541--34023576	1	36.0	1	88	0	54	0	94	2	2	0.37
34026966--34026995	14	2.1	14	100	0	60	0	6	0	93	0.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34026970--34026994	13	1.9	13	100	0	50	0	4	0	96	0.24
34028122--34028166	23	1.9	24	86	4	65	48	0	0	51	1.00
34037453--34037486	12	2.7	13	86	4	52	61	11	20	5	1.50
34052919--34053022	41	2.5	40	78	6	109	52	10	12	24	1.70
34057123--34057157	17	2.0	17	88	5	52	28	5	5	60	1.43
34064225--34064277	24	2.2	24	86	0	70	32	5	13	49	1.65
34064241--34064288	24	2.0	24	83	0	60	33	8	10	47	1.68
34064049--34064395	171	2.0	171	97	0	658	40	6	6	46	1.53
34064049--34064447	171	2.3	171	90	5	592	40	5	6	47	1.53
34064417--34064481	21	2.9	23	77	15	64	44	4	4	46	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195