Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  15  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3475072--3475127
21
2.6
21
78
13
69
19
1
26
51
1.57
3475108--3475263
7
21.4
7
68
14
57
19
0
31
48
1.54
3474954--3475141
104
1.8
104
79
9
222
21
2
28
47
1.62
3475087--3475214
66
1.9
66
82
3
159
19
1
30
48
1.58
3475153--3475321
8
23.3
7
66
21
64
18
0
30
50
1.47
3475158--3475229
29
2.6
29
82
10
96
16
0
33
50
1.46
3475168--3475237
21
3.2
21
72
20
63
17
0
32
50
1.46
3475160--3475263
44
2.4
43
88
1
145
18
0
30
50
1.47
3475217--3475321
30
3.6
29
83
8
115
20
0
28
50
1.49
3475317--3475378
14
4.4
14
75
15
56
25
1
24
48
1.60
3475210--3475337
58
2.2
59
78
9
138
21
0
28
49
1.50
3475326--3475393
28
2.4
28
85
2
91
26
1
23
48
1.59
3475326--3475392
14
4.7
14
80
9
73
25
1
23
49
1.59
3475533--3475614
3
27.3
3
91
4
130
29
0
1
69
0.96
3478682--3478725
12
3.6
12
84
6
61
86
6
0
6
0.71
3478681--3478736
25
2.2
25
80
0
67
80
7
7
5
1.02
3478910--3479068
29
5.6
29
79
5
135
30
17
14
37
1.90
3478931--3479073
29
5.0
29
81
3
146
28
18
16
35
1.93
3478931--3479073
28
5.0
29
81
1
121
28
18
16
35
1.93
3479078--3479132
28
2.0
28
89
7
85
41
20
7
30
1.79
3479130--3479196
23
3.0
23
80
2
82
31
25
17
25
1.97
3479179--3479288
49
2.2
51
81
3
134
32
21
15
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3481552--3481592
18
2.4
17
87
4
55
78
0
19
2
0.87
3481540--3481577
14
2.7
14
80
15
51
78
0
18
2
0.86
3481552--3481654
17
5.6
17
73
14
62
78
0
16
4
0.91
3481615--3481663
15
3.3
14
80
11
53
81
0
16
2
0.78
3481608--3481661
18
3.1
17
84
7
63
81
0
16
1
0.78
3481899--3481948
26
2.0
26
92
4
84
26
36
6
32
1.81
3482853--3482915
15
4.3
15
80
9
67
55
23
3
17
1.56
3482921--3483003
29
2.8
28
75
8
76
49
25
3
21
1.66
3482897--3483003
51
2.1
53
84
10
141
49
27
3
19
1.65
3485512--3485574
2
31.5
2
93
0
108
49
1
1
47
1.20
3487224--3487284
31
1.9
32
86
3
88
29
6
14
49
1.69
3488763--3488795
2
16.5
2
93
0
57
45
0
3
51
1.16
3502649--3502683
16
2.2
16
90
10
54
48
0
0
51
1.00
3502664--3502753
26
3.5
26
76
16
80
44
0
2
53
1.13
3514176--3514219
21
2.1
21
86
0
61
65
0
0
34
0.93
3514660--3514922
132
2.0
133
96
1
483
27
17
17
37
1.92
3526129--3526192
8
8.2
8
76
10
53
54
0
0
45
0.99
3526129--3526189
23
2.7
23
81
0
86
54
0
0
45
1.00
3526137--3526181
19
2.3
20
85
7
58
51
0
0
48
1.00
3526869--3526929
18
3.5
17
75
16
63
62
3
0
34
1.12
3529458--3529519
26
2.4
26
81
7
74
59
0
3
37
1.13
3546102--3546139
3
12.7
3
100
0
76
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3546399--3546431
15
2.2
15
94
0
57
51
3
6
39
1.42
3546392--3546432
15
2.8
14
82
10
55
43
4
7
43
1.53
3550340--3550532
46
4.8
36
70
26
120
27
13
6
52
1.65
3550355--3550522
46
3.9
46
72
21
173
26
14
5
53
1.63
3550331--3550559
82
2.8
82
91
4
347
26
14
5
53
1.63
3550469--3550709
37
6.5
37
75
9
147
26
16
6
51
1.68
3550502--3550711
72
2.9
73
78
7
221
26
16
6
50
1.70
3550530--3550669
36
3.9
36
78
6
149
26
17
5
50
1.68
3553386--3553420
2
17.5
2
93
0
61
51
2
0
45
1.16
3554255--3554319
17
3.5
20
70
21
68
40
0
0
60
0.97
3557326--3557399
32
2.3
32
90
2
114
45
12
8
33
1.71
3557379--3557437
20
3.0
21
82
7
70
52
8
1
37
1.42
3557386--3557437
19
2.6
21
82
8
65
55
9
1
32
1.43
3558172--3558690
259
1.9
262
83
8
670
43
5
7
43
1.56
3565641--3565666
6
4.3
6
100
0
52
65
19
15
0
1.27
3568584--3568623
21
1.9
21
94
0
71
30
27
2
40
1.70
3572131--3572164
17
2.0
17
100
0
68
35
11
17
35
1.87
3574265--3574323
25
2.4
24
81
13
66
45
5
3
45
1.42
3584806--3584841
17
2.1
17
94
0
63
11
11
19
58
1.62
3593387--3593421
17
2.1
16
89
10
52
57
0
0
42
0.99
3601821--3601873
22
2.5
21
82
14
72
37
0
5
56
1.23
3602142--3602175
3
11.3
3
87
12
52
70
0
0
29
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3603480--3603562
38
2.2
37
77
12
89
65
3
9
21
1.38
3603909--3603965
14
3.9
14
73
13
53
52
22
0
24
1.47
3603901--3603965
30
2.2
30
86
5
87
50
23
0
26
1.49
3603901--3603951
16
3.3
16
75
10
52
49
23
0
27
1.51
3604013--3604057
23
2.0
22
87
8
65
46
24
4
24
1.71
3604207--3604264
29
2.0
29
86
0
80
51
20
0
27
1.47
3605375--3605415
21
1.9
22
85
5
57
46
7
7
39
1.60
3606327--3606408
21
3.9
21
70
10
69
50
9
4
35
1.57
3606587--3606779
21
9.3
21
73
10
146
48
10
6
34
1.65
3606587--3606699
41
2.7
42
77
8
124
48
10
5
35
1.60
3606587--3606783
104
1.9
104
85
6
274
47
10
6
35
1.64
3606961--3607029
20
3.3
22
71
20
58
43
11
4
40
1.61
3606968--3607049
41
2.0
40
88
2
119
47
10
4
36
1.60
3606973--3607125
21
7.4
21
74
11
100
45
8
8
37
1.65
3607014--3607125
42
2.7
42
78
12
115
44
8
9
37
1.67
3607240--3607366
22
5.8
22
74
7
78
39
12
6
41
1.68
3607254--3607366
44
2.6
44
78
0
118
39
13
5
41
1.67
3607413--3607470
22
2.7
20
76
12
53
41
10
3
44
1.55
3607515--3607637
22
5.5
22
81
8
104
39
7
6
47
1.57
3607552--3607622
25
3.0
25
89
6
103
40
7
5
46
1.54
3607530--3607901
22
16.8
22
73
9
130
36
9
5
48
1.58
3607947--3608013
22
3.0
22
76
4
64
35
8
7
47
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3608118--3608195
22
3.6
21
73
13
68
41
10
3
44
1.56
3608135--3608217
22
3.8
22
79
3
69
43
6
6
44
1.53
3610775--3610827
28
1.9
27
88
3
79
32
5
11
50
1.61
3610800--3610908
21
5.2
21
73
9
89
33
8
12
45
1.72
3610896--3610947
22
2.3
23
90
6
81
36
1
7
53
1.41
3611234--3611972
22
33.5
22
68
10
188
38
8
6
46
1.60
3611706--3611943
89
2.7
89
79
5
250
37
7
6
47
1.58
3611884--3611943
11
5.5
11
75
0
66
36
5
5
53
1.45
3612261--3612318
22
2.6
23
75
8
57
41
6
1
50
1.39
3612260--3612420
43
3.7
44
73
8
105
36
4
9
49
1.57
3612346--3612442
22
4.5
22
82
6
83
34
2
14
49
1.55
3612358--3612442
43
2.0
44
81
11
104
34
2
12
50
1.54
3612522--3612563
19
2.2
19
91
0
66
35
9
4
50
1.56
3612689--3612769
22
3.8
21
79
6
83
38
4
7
49
1.53
3612857--3612943
44
2.0
44
83
0
111
35
8
6
49
1.59
3612985--3613053
22
3.1
22
75
8
68
39
7
4
49
1.50
3613057--3613138
22
3.8
22
79
4
69
39
12
3
45
1.59
3613916--3613991
37
2.1
37
97
0
143
51
3
10
34
1.55
3616509--3616539
15
2.1
15
93
0
53
61
6
0
32
1.21
3617785--3617838
21
2.6
21
90
0
81
50
0
1
48
1.11
3617988--3618070
42
2.0
42
83
4
105
46
2
2
48
1.28
3619427--3619458
3
10.7
3
93
0
55
65
3
0
31
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3627142--3627176
17
2.1
17
89
10
54
42
0
0
57
0.99
3628718--3628808
45
2.0
45
97
0
173
39
31
2
26
1.68
3635728--3635765
16
2.5
15
88
12
60
57
21
10
10
1.61
3635732--3635765
16
2.2
16
94
5
61
58
17
11
11
1.62
3646259--3646315
25
2.3
25
80
14
64
47
3
3
45
1.37
3648410--3648443
17
2.0
17
100
0
68
35
17
11
35
1.87
3651961--3652000
21
1.9
21
94
0
71
40
2
27
30
1.70
3654924--3654949
6
4.3
6
100
0
52
0
15
19
65
1.27
3660538--3660575
18
2.1
18
100
0
76
26
28
5
39
1.78
3661510--3661565
25
2.2
26
87
3
78
57
1
3
37
1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195