genome.fa.s112.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  67  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13221508--13221618	45	2.5	45	83	0	150	20	27	30	20	1.98
13224199--13224248	22	2.3	22	100	0	100	16	28	28	28	1.97
13231498--13231596	45	2.2	45	80	3	110	18	29	31	21	1.97
13238910--13238963	26	2.1	26	96	0	99	11	27	38	22	1.88
13239056--13239089	6	5.5	6	89	3	50	0	82	0	17	0.67
13240014--13240099	45	1.9	45	83	4	111	23	31	19	25	1.98
13241414--13241507	45	2.1	45	83	0	116	17	28	30	23	1.97
13241484--13241648	90	1.8	90	80	0	195	19	27	29	23	1.98
13241783--13241866	44	2.0	42	86	9	116	30	25	25	19	1.98
13245971--13246026	23	2.4	23	96	0	103	23	17	37	21	1.94
13246392--13246588	45	4.4	46	72	3	141	20	30	26	22	1.98
13246568--13246620	22	2.4	21	87	6	70	20	39	18	20	1.92
13252626--13252933	149	2.1	150	86	1	422	23	27	24	25	2.00
13253927--13254075	45	3.3	44	76	1	127	22	23	28	25	2.00
13254058--13254143	45	1.9	45	83	4	111	18	31	29	20	1.97
13268828--13268852	13	1.9	13	100	0	50	24	16	36	24	1.94
13283492--13283839	148	2.3	148	80	7	348	22	24	25	28	1.99
13289495--13289535	21	2.0	21	100	0	82	12	39	29	19	1.88
13289498--13289543	21	2.2	21	88	0	65	15	41	26	17	1.88
13290594--13290854	90	2.9	89	81	5	287	20	25	28	25	1.99
13290834--13290888	23	2.4	23	84	3	76	12	29	36	21	1.91
13299478--13299753	149	1.8	150	86	0	401	19	27	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13300296--13300320	13	1.9	13	100	0	50	24	16	36	24	1.94
13300641--13300919	45	6.2	45	75	4	213	18	30	29	20	1.97
13300640--13300904	135	2.0	135	80	5	304	19	30	29	20	1.97
13305688--13306043	150	2.4	147	81	4	374	21	27	24	26	1.99
13312967--13313068	45	2.3	45	78	0	114	19	33	24	22	1.97
13321047--13321107	24	2.5	24	89	0	95	19	39	21	19	1.93
13321552--13321874	149	2.2	150	84	2	400	21	27	24	27	1.99
13322421--13322445	13	1.9	13	100	0	50	24	16	36	24	1.94
13331888--13331986	45	2.2	45	81	3	119	16	32	29	22	1.95
13340503--13340527	13	1.9	13	100	0	50	24	16	36	24	1.94
13340563--13340955	162	2.4	161	80	3	396	21	31	25	20	1.98
13350551--13350855	147	2.1	150	84	5	404	23	27	21	27	1.99
13351280--13351310	15	2.1	15	93	0	53	19	38	25	16	1.92
13351750--13351851	45	2.3	45	80	0	114	12	26	35	25	1.92
13351474--13351806	161	2.1	161	81	4	384	19	29	28	22	1.98
13351474--13351845	162	2.3	161	79	3	390	19	29	28	22	1.98
13357577--13357662	45	1.9	45	82	0	109	20	25	29	24	1.99
13365015--13365048	12	2.8	12	95	4	59	0	73	0	26	0.83
13370774--13370818	23	2.0	23	86	0	63	15	26	28	28	1.96
13370954--13371273	150	2.1	149	84	2	401	21	28	24	25	1.99
13372189--13372347	45	3.5	44	74	8	151	20	32	26	20	1.97
13375663--13375689	11	2.5	11	100	0	54	0	81	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13392397--13392715	161	2.0	161	80	8	364	20	30	27	21	1.98
13397662--13397701	21	1.9	21	89	0	62	15	35	25	25	1.94
13401759--13402128	150	2.5	148	83	4	424	23	25	23	27	2.00
13403131--13403235	45	2.3	45	83	0	129	23	32	24	19	1.97
13403501--13403585	45	1.9	44	80	7	100	18	38	23	18	1.93
13411844--13412198	150	2.4	147	81	3	390	22	25	23	27	2.00
13416377--13416763	150	2.6	148	79	6	406	22	25	24	27	2.00
13434705--13435058	150	2.4	148	82	3	381	19	24	26	29	1.98
13440802--13440919	45	2.6	45	82	5	141	26	35	18	19	1.95
13449144--13449249	45	2.4	45	85	3	133	23	35	21	18	1.95
13449195--13449356	71	2.3	71	90	0	252	25	31	23	19	1.98
13455661--13455836	45	3.9	45	72	7	142	19	26	30	23	1.98
13455661--13455835	90	1.9	90	83	0	224	19	26	30	24	1.98
13455664--13455857	90	2.2	90	79	0	208	20	28	28	22	1.99
13460620--13460956	149	2.3	149	83	5	396	20	27	24	27	1.99
13467708--13467836	45	2.8	46	80	3	145	20	33	26	20	1.97
13467524--13467836	90	3.5	89	73	3	236	20	30	27	21	1.98
13473691--13473776	45	1.9	45	85	4	120	17	32	27	22	1.96
13483136--13483160	13	1.9	13	100	0	50	24	16	36	24	1.94
13483421--13483650	45	5.1	45	74	2	138	20	28	27	22	1.99
13492694--13492811	45	2.6	45	79	2	121	22	34	23	19	1.96
13497777--13497817	21	2.0	21	90	0	64	17	34	26	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13513090--13513299	45	4.7	45	72	5	156	18	29	30	21	1.97
13521863--13521970	45	2.4	44	80	4	117	22	36	23	18	1.95
13521890--13522289	162	2.5	161	79	2	437	21	30	27	20	1.98
13522181--13522399	45	4.9	45	78	6	228	20	31	29	19	1.97
13528218--13528537	150	2.1	150	81	4	378	21	27	23	27	1.99
13535372--13535617	90	2.7	89	76	6	237	22	29	26	21	1.99
13535471--13535621	45	3.4	45	72	5	135	21	30	26	21	1.98
13535555--13535664	45	2.4	45	80	8	118	22	36	22	18	1.95
13550455--13550557	45	2.3	45	77	3	109	24	32	23	20	1.98
13554773--13554819	18	2.6	18	96	0	85	27	17	23	31	1.96
13556481--13556574	45	2.1	45	84	4	118	18	36	25	20	1.95
13580320--13580408	45	2.0	45	88	4	135	17	31	30	20	1.96
13593630--13594002	150	2.5	147	80	7	389	22	27	23	26	2.00
13594770--13594821	23	2.3	23	96	0	95	5	26	44	23	1.76
13595090--13595143	23	2.3	23	90	0	90	16	25	37	20	1.93
13608287--13608335	21	2.3	21	89	0	71	16	32	26	24	1.96
13612385--13612771	150	2.6	149	83	4	476	21	26	25	26	1.99
13613739--13613827	45	2.0	45	86	4	126	20	28	29	22	1.98
13622035--13622341	147	2.1	149	83	6	383	22	26	24	27	2.00
13626347--13626432	45	1.9	45	85	4	120	18	32	23	25	1.97
13626532--13626882	151	2.3	148	82	6	395	20	25	24	29	1.99
13627496--13627856	162	2.2	160	79	6	381	22	30	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13627786--13627963	45	4.0	45	72	4	135	19	30	29	20	1.97
13627592--13628143	297	1.9	296	78	4	619	22	29	26	21	1.99
13630410--13630462	26	2.0	26	85	7	72	30	20	22	26	1.98
13631516--13631540	13	1.9	13	100	0	50	24	16	36	24	1.94
13631633--13632159	45	11.7	45	73	3	236	18	30	29	21	1.97
13631737--13632052	90	3.5	89	77	4	287	18	27	31	21	1.97
13641191--13641460	45	6.0	45	77	2	211	19	28	30	22	1.98
13641328--13641505	90	2.0	90	83	3	225	17	29	31	21	1.96
13641330--13641525	45	4.4	45	83	3	191	18	31	28	22	1.97
13641330--13641530	90	2.2	89	79	4	217	19	31	27	21	1.97
13641510--13641557	22	2.2	22	84	0	60	22	39	16	20	1.92
13648685--13648994	45	6.9	45	68	7	139	21	28	27	22	1.99
13648787--13648950	90	1.8	90	85	2	231	21	25	29	23	1.99
13648686--13648955	135	2.0	135	79	2	292	21	27	28	22	1.99
13648974--13649019	23	2.0	23	100	0	92	17	26	34	21	1.95
13660104--13660167	24	2.7	24	100	0	128	12	31	28	28	1.93
13660645--13660940	149	2.0	150	85	3	400	23	27	23	25	2.00
13676376--13676725	150	2.4	148	81	9	390	22	27	22	28	1.99
13677261--13677285	13	1.9	13	100	0	50	24	16	36	24	1.94
13677789--13677894	45	2.4	45	81	0	122	19	33	27	19	1.96
13686364--13686727	150	2.4	148	81	5	376	20	24	24	30	1.99
13687056--13687098	12	3.6	12	100	0	86	39	18	27	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13687340--13687439	45	2.2	46	84	7	125	24	36	22	18	1.95
13688210--13688288	40	2.0	41	82	2	97	18	13	25	41	1.88
13699280--13699343	21	3.0	21	97	0	119	17	32	28	21	1.96
13709887--13710193	148	2.1	148	84	1	398	22	26	24	27	2.00
13709825--13710193	150	2.5	147	81	4	402	22	23	24	29	1.99
13719875--13720206	148	2.2	149	82	4	393	23	26	23	26	2.00
13724199--13724284	45	1.9	45	81	9	104	18	31	23	26	1.97
13724805--13724847	19	2.3	19	84	4	52	23	6	13	55	1.62
13726077--13726177	49	2.1	49	86	3	141	18	44	16	19	1.87
13734668--13734720	26	2.0	26	82	7	63	28	15	24	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195