genome.fa.s112.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  31  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6946343--6946372	16	1.9	16	93	6	53	20	3	0	76	0.92
6948190--6948269	22	3.6	22	75	9	74	68	1	6	23	1.19
6948498--6948644	77	1.9	78	83	8	192	56	16	7	19	1.63
6948819--6949050	111	2.1	112	80	8	256	31	14	7	46	1.73
6948935--6949236	101	3.0	101	83	4	376	29	14	11	44	1.80
6950135--6950161	12	2.2	12	100	0	54	14	0	0	85	0.61
6950472--6950643	81	2.2	79	82	9	215	30	23	8	37	1.84
6953909--6954083	44	3.9	44	74	11	165	52	10	13	23	1.71
6955542--6955571	8	3.8	8	95	0	51	13	0	0	86	0.57
6958090--6958123	16	2.3	14	90	10	50	73	2	8	14	1.19
6958152--6958213	17	3.8	17	68	20	51	66	1	6	25	1.25
6958143--6958230	14	5.4	17	70	22	64	65	3	5	25	1.30
6958166--6958237	17	4.2	17	72	19	53	65	1	8	25	1.29
6959402--6959441	20	2.0	20	85	0	53	75	2	5	17	1.10
6963623--6963679	26	2.2	25	81	12	69	17	5	1	75	1.07
6968112--6968144	12	2.8	12	90	0	57	66	9	0	24	1.20
6969661--6969693	2	16.5	2	100	0	66	51	0	0	48	1.00
6969777--6969834	20	2.9	21	73	19	61	55	3	0	41	1.17
6970118--6970167	20	2.5	20	93	6	84	48	0	0	52	1.00
6970181--6970226	20	2.3	19	82	17	58	69	0	0	30	0.89
6970540--6970589	25	2.2	22	83	16	59	46	0	12	42	1.41
6970531--6970581	25	2.0	25	96	0	93	54	0	11	33	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6974971--6975024	21	2.5	21	81	6	63	61	0	0	38	0.96
6985449--6985489	12	3.4	12	86	0	55	36	0	12	51	1.40
6995156--6995218	21	3.0	21	79	6	56	11	6	3	79	1.03
6996070--6996107	18	2.2	17	90	4	58	2	0	21	76	0.91
6996653--6996692	20	2.0	20	85	0	53	62	12	2	22	1.42
6996799--6996895	42	2.3	42	85	8	135	39	19	11	29	1.87
6996938--6997015	41	1.9	41	91	0	129	42	16	11	29	1.83
6997192--6997294	42	2.5	42	85	6	140	45	21	8	24	1.80
6997277--6997376	40	2.4	41	77	11	114	48	17	5	30	1.68
6997620--6997701	35	2.3	35	79	14	94	42	10	14	31	1.81
6997644--6997716	35	2.1	35	85	10	96	43	9	13	32	1.77
7006873--7006993	61	2.0	61	81	4	145	38	9	9	42	1.70
7007875--7007934	23	2.8	21	74	16	50	53	3	3	40	1.34
7009045--7009070	2	13.0	2	100	0	52	50	0	0	50	1.00
7012224--7012248	2	12.5	2	100	0	50	52	0	0	48	1.00
7013988--7014021	10	3.5	10	96	4	61	35	0	0	64	0.94
7014179--7014207	14	2.0	15	93	6	51	24	0	0	75	0.80
7015146--7015181	7	5.6	7	81	18	51	61	0	0	38	0.96
7015412--7015451	21	1.9	21	89	0	62	77	15	0	7	0.98
7016553--7016608	17	3.2	17	78	12	60	67	1	1	28	1.10
7016557--7016624	9	7.0	9	71	25	50	69	1	1	27	1.06
7017269--7017317	18	2.8	17	75	9	53	51	0	2	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7017734--7017774	16	2.5	17	76	11	50	39	2	0	58	1.11
7020122--7020160	2	19.5	2	100	0	78	48	0	0	51	1.00
7022196--7022230	18	2.0	18	94	5	63	48	0	11	40	1.39
7027693--7027761	29	2.3	29	80	5	75	46	1	7	44	1.40
7032144--7032414	93	2.9	93	80	6	280	39	5	8	46	1.58
7033772--7033936	4	40.5	4	69	20	60	26	2	1	69	1.11
7033774--7033936	69	2.3	70	78	11	172	26	2	1	68	1.12
7033763--7033936	7	23.9	7	65	24	53	25	2	1	70	1.09
7033957--7034011	17	2.9	20	78	15	71	21	5	7	65	1.38
7034853--7034991	6	22.7	6	74	17	63	20	0	2	76	0.94
7034855--7034996	9	16.0	9	72	8	67	21	1	2	75	0.99
7034890--7034925	3	12.0	3	100	0	72	33	0	0	66	0.92
7035655--7035694	22	1.9	20	85	10	53	25	7	5	62	1.42
7044396--7044590	35	5.6	36	71	13	126	51	13	15	20	1.76
7044336--7044871	103	5.2	103	87	2	704	47	12	17	22	1.80
7044344--7044871	205	2.6	205	86	2	740	48	12	16	22	1.79
7044855--7045273	73	5.7	73	83	2	455	44	13	21	20	1.85
7045014--7045124	35	3.1	35	65	12	98	43	15	23	18	1.87
7044855--7045273	219	1.9	220	82	2	529	44	13	21	20	1.85
7046307--7046339	16	2.1	16	94	0	57	6	15	0	78	0.93
7046326--7046409	10	8.6	10	77	12	77	9	8	1	80	0.94
7046326--7046369	19	2.3	19	96	0	79	9	11	0	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7046353--7046398	15	3.1	14	82	14	56	10	2	2	84	0.79
7053757--7053781	13	1.9	13	100	0	50	48	4	24	24	1.68
7057790--7057870	15	5.5	15	72	20	55	19	0	30	49	1.49
7057801--7057871	29	2.4	29	82	11	92	18	0	30	50	1.47
7059305--7059366	23	2.7	22	80	5	61	9	3	6	80	0.99
7059355--7059405	20	2.6	21	84	9	63	27	1	1	68	1.11
7060613--7060645	10	3.4	10	87	4	50	81	0	9	9	0.87
7060613--7060653	8	4.7	9	82	14	50	82	0	9	7	0.83
7061659--7061965	42	7.5	42	78	13	238	26	15	18	39	1.91
7061809--7061872	31	2.1	31	96	0	119	26	9	20	43	1.82
7061840--7061965	43	3.0	41	82	8	153	24	14	18	42	1.87
7062159--7062329	24	6.9	24	68	15	82	25	3	2	67	1.20
7062158--7062205	12	3.8	12	77	20	53	20	0	2	77	0.88
7062164--7062212	12	4.2	12	80	19	59	22	0	2	75	0.90
7062158--7062214	19	3.2	19	75	20	61	22	0	1	75	0.90
7062285--7062334	26	2.0	24	88	7	73	32	4	4	60	1.34
7062294--7062373	14	5.8	14	69	17	60	28	5	3	62	1.33
7062341--7062377	16	2.3	16	90	0	56	27	5	2	64	1.28
7063273--7063297	10	2.5	10	100	0	50	40	0	0	60	0.97
7063256--7063310	4	13.5	4	77	11	58	27	0	0	72	0.85
7063348--7063413	6	10.5	6	75	15	62	15	4	0	80	0.87
7063349--7063403	22	2.5	22	88	2	76	14	5	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7063348--7063413	11	6.3	10	72	13	53	15	4	0	80	0.87
7063410--7063763	58	6.1	58	73	16	232	47	6	10	35	1.65
7063428--7063765	117	2.8	118	79	9	366	47	7	11	34	1.66
7064264--7064316	23	2.4	23	84	6	74	43	7	9	39	1.65
7064264--7064330	22	3.0	22	82	6	75	46	7	10	35	1.66
7064264--7064321	21	2.7	20	75	15	53	48	6	8	36	1.61
7064342--7064467	45	2.8	45	80	5	130	44	13	4	37	1.65
7064344--7064472	22	5.7	22	71	13	66	42	13	4	38	1.66
7064433--7064560	44	2.9	43	81	9	143	39	12	6	41	1.68
7065236--7065318	25	3.4	25	76	3	87	54	12	6	27	1.60
7066963--7067001	21	1.9	20	89	5	60	46	17	7	28	1.76
7067092--7067122	13	2.4	13	100	0	62	41	0	22	35	1.54
7068795--7069164	196	1.9	195	97	0	704	45	13	12	28	1.81
7069879--7069907	13	2.1	14	93	6	51	51	6	0	41	1.28
7070654--7070704	12	4.1	12	80	9	57	37	0	0	62	0.95
7070731--7070803	15	5.0	15	69	15	55	60	2	1	35	1.20
7075012--7075042	2	15.5	2	93	0	53	48	0	0	51	1.00
7084736--7084761	13	2.0	13	100	0	52	46	30	7	15	1.74
7092747--7092800	26	2.2	23	81	12	63	75	0	5	18	0.98
7093616--7093751	64	2.1	64	80	4	148	50	13	14	22	1.77
7093955--7093989	18	1.9	18	88	0	52	37	17	14	31	1.89
7093887--7094072	85	2.2	85	86	1	257	38	15	14	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7093994--7094128	68	2.0	69	83	1	173	34	16	15	34	1.90
7094068--7094263	86	2.3	86	86	5	272	34	13	20	32	1.91
7094381--7094633	55	4.6	55	74	8	192	44	16	20	18	1.87
7094368--7094632	110	2.4	111	80	6	270	43	16	21	18	1.88
7105247--7105346	43	2.3	43	83	6	114	28	7	15	50	1.69
7105268--7105359	43	2.1	43	88	4	132	27	8	15	48	1.74
7105268--7105373	43	2.5	43	84	6	117	28	8	15	48	1.74
7111590--7111868	145	1.9	145	99	0	549	31	19	13	35	1.91
7115891--7115916	13	2.0	13	100	0	52	46	7	7	38	1.61
7119908--7119942	15	2.3	15	90	9	54	54	0	5	40	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195