genome.fa.s112.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  39  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8226512--8226546	2	17.5	2	93	0	61	51	0	2	45	1.16
8228872--8228951	42	1.9	42	89	0	124	33	12	11	42	1.78
8228994--8229019	13	2.0	13	100	0	52	46	0	15	38	1.46
8231557--8231595	3	13.0	3	100	0	78	66	0	0	33	0.92
8231899--8231931	3	11.0	3	100	0	66	66	0	0	33	0.92
8234094--8234192	49	2.0	49	90	0	153	36	24	17	22	1.95
8236993--8237062	30	2.4	29	81	9	81	42	0	0	57	0.99
8236979--8237059	39	2.0	40	81	13	96	39	0	0	60	0.97
8236978--8237061	13	6.7	13	73	26	67	39	0	0	60	0.97
8244329--8244358	9	3.3	9	100	0	60	10	0	0	90	0.47
8244300--8244355	23	2.4	23	75	0	58	12	3	3	80	0.97
8244466--8244766	148	2.0	147	90	5	476	25	13	15	44	1.83
8244764--8244854	25	3.6	26	77	12	82	29	0	4	65	1.11
8244917--8244944	14	2.0	14	100	0	56	14	7	7	71	1.29
8245432--8245470	20	2.0	20	85	5	53	28	17	15	38	1.91
8245826--8245962	17	8.2	16	69	15	73	17	3	2	75	1.07
8245826--8245962	11	12.4	11	71	18	63	17	3	2	75	1.07
8245893--8245975	6	13.7	6	74	15	64	15	4	1	78	0.98
8245827--8245974	18	8.9	16	66	26	62	18	4	2	75	1.09
8246002--8246275	58	4.7	57	85	4	386	44	5	12	36	1.66
8259842--8259919	8	8.7	9	75	13	72	82	1	6	10	0.91
8259843--8259911	18	3.9	17	81	10	84	81	1	7	10	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8259841--8259919	18	4.3	18	77	4	79	82	1	6	10	0.90
8260948--8261203	41	6.1	41	88	2	350	24	16	23	36	1.94
8260948--8261203	83	3.1	84	89	3	385	24	16	23	36	1.94
8260954--8261201	124	2.0	126	89	3	385	24	15	22	37	1.93
8261471--8261542	25	2.9	25	82	13	71	33	0	5	61	1.19
8261495--8261544	15	3.3	15	76	20	50	32	0	4	64	1.12
8261613--8261639	13	2.1	13	100	0	54	14	7	7	70	1.32
8262598--8262663	22	3.1	21	74	12	64	13	4	1	80	0.94
8262598--8262663	11	6.2	10	72	18	53	13	4	1	80	0.94
8262590--8262645	17	3.3	17	82	5	60	12	5	1	80	0.96
8262602--8262652	17	2.9	18	75	16	54	13	3	1	80	0.94
8262605--8262664	24	2.5	24	77	22	63	15	5	1	78	1.00
8262667--8262901	59	4.0	59	88	3	332	44	8	12	34	1.72
8262667--8262901	117	2.0	118	86	5	332	44	8	12	34	1.72
8263675--8264646	49	19.3	49	77	8	758	41	17	10	30	1.82
8263669--8264646	152	6.5	150	76	9	643	41	17	10	30	1.83
8263675--8264646	101	9.6	101	77	9	751	41	17	10	30	1.82
8264354--8264545	103	1.9	104	86	4	284	40	18	13	27	1.88
8263657--8264648	352	2.8	346	79	7	1075	41	17	10	30	1.83
8265439--8265502	28	2.2	28	86	10	94	6	6	3	84	0.86
8265439--8265502	29	2.2	29	86	5	94	6	6	3	84	0.86
8274740--8274786	24	1.9	24	82	4	58	23	6	10	59	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8276304--8276336	17	2.0	17	88	5	50	21	0	9	69	1.15
8275115--8277068	976	2.0	968	91	1	2680	35	13	15	35	1.87
8277984--8278030	19	2.5	19	93	3	78	31	0	0	68	0.90
8279156--8279198	8	5.2	8	77	5	50	6	2	11	79	1.02
8279149--8279198	16	3.1	16	83	11	57	8	4	10	78	1.09
8280292--8280318	2	13.5	2	100	0	54	51	0	0	48	1.00
8282384--8282426	2	21.5	2	100	0	86	51	0	48	0	1.00
8285247--8285276	11	2.6	11	94	5	51	36	10	10	43	1.72
8285536--8285587	23	2.2	25	86	6	72	75	1	9	13	1.14
8285519--8285592	31	2.4	31	80	10	89	75	1	8	14	1.09
8285521--8285593	30	2.4	30	82	13	87	75	1	9	13	1.11
8287525--8287562	18	2.1	18	85	9	51	84	0	13	2	0.73
8291262--8291302	17	2.5	17	92	4	66	56	0	0	43	0.99
8291230--8291300	22	3.5	21	72	16	69	54	0	0	45	0.99
8293495--8293568	35	2.1	36	89	2	114	56	2	5	35	1.36
8294260--8294565	136	2.3	132	78	15	325	52	4	11	31	1.58
8294863--8295080	112	1.9	113	82	9	275	52	6	3	37	1.45
8295312--8295342	2	15.5	2	100	0	62	51	0	0	48	1.00
8296028--8296084	30	1.9	30	88	0	87	38	15	1	43	1.57
8302439--8302474	17	2.1	17	100	0	72	44	5	11	38	1.63
8304066--8304211	61	2.4	61	79	8	156	34	4	20	41	1.72
8304343--8304642	128	2.3	127	80	6	311	40	6	10	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8304775--8304904	60	2.2	60	82	8	149	40	4	16	39	1.69
8305724--8305897	61	2.8	62	75	9	167	41	4	16	37	1.67
8311650--8311680	2	15.5	2	100	0	62	51	0	0	48	1.00
8320637--8320661	2	12.5	2	100	0	50	48	0	0	52	1.00
8327774--8328442	203	3.3	202	80	5	649	42	10	13	34	1.78
8328950--8329022	36	2.1	35	86	2	101	32	4	8	54	1.49
8330258--8330636	178	2.1	178	82	2	449	44	15	20	18	1.86
8330241--8330643	89	4.5	90	77	4	379	44	15	21	18	1.86
8330606--8330664	26	2.3	26	82	5	75	38	11	25	23	1.89
8330445--8330836	204	1.9	204	83	1	507	44	13	21	20	1.86
8330630--8331007	89	4.2	89	79	3	368	43	13	22	20	1.87
8330630--8331007	178	2.1	178	78	4	415	43	13	22	20	1.87
8341986--8342017	16	2.0	16	93	0	55	18	3	6	71	1.20
8342002--8342073	37	2.0	36	94	2	126	30	1	8	59	1.35
8343037--8343094	25	2.3	25	100	0	116	31	24	36	8	1.85
8346490--8347339	237	3.6	234	81	5	976	46	11	8	33	1.71
8367990--8368014	7	3.6	7	100	0	50	12	16	44	28	1.83
8368243--8368332	25	3.8	24	75	17	73	40	0	0	60	0.97
8368274--8368340	25	2.9	23	79	16	68	41	0	0	58	0.98
8368370--8368410	22	1.9	21	85	5	55	58	7	7	26	1.51
8368363--8368426	33	1.9	33	83	0	83	59	6	6	28	1.46
8374868--8374892	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8379685--8379742	21	2.6	22	81	8	64	65	0	0	34	0.93
8379691--8379727	17	2.1	17	90	5	56	67	0	0	32	0.91
8379827--8379865	19	2.0	20	85	9	55	53	0	0	46	1.00
8381399--8381435	16	2.3	16	90	0	56	27	2	0	70	1.01
8381599--8381639	21	2.0	21	85	9	57	51	0	2	46	1.14
8381636--8381691	19	2.9	19	82	10	69	55	1	0	42	1.10
8384341--8384373	9	3.8	9	88	4	50	90	0	9	0	0.44
8384344--8384372	15	1.9	15	100	0	58	89	0	10	0	0.48
8389812--8389859	2	24.0	2	100	0	96	0	50	0	50	1.00
8393974--8394012	19	2.0	20	95	5	71	64	0	0	35	0.94
8395418--8395452	15	2.3	15	95	0	61	31	2	0	65	1.07
8395948--8395989	10	4.3	10	80	17	52	30	0	0	69	0.89
8395948--8395989	20	2.2	19	91	4	66	30	0	0	69	0.89
8395948--8395989	19	2.1	21	87	12	63	30	0	0	69	0.89
8396027--8396067	13	3.2	13	96	0	73	65	0	0	34	0.93
8396614--8396644	1	31.0	1	100	0	62	100	0	0	0	0.00
8402328--8402361	11	3.1	11	91	0	59	55	23	0	20	1.43
8404169--8404212	19	2.4	18	84	3	52	22	0	2	75	0.92
8420394--8420444	24	2.1	25	85	7	70	31	0	7	60	1.25
8421040--8421131	22	4.2	22	77	5	78	44	3	15	36	1.62
8421126--8421196	22	3.2	22	73	15	65	54	8	4	32	1.50
8421271--8421334	11	5.9	11	70	17	53	48	1	10	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8421258--8421349	22	4.2	22	87	5	116	46	1	11	40	1.48
8421272--8421515	43	5.7	43	72	9	144	47	4	11	36	1.59
8421258--8421339	22	3.8	22	90	3	121	47	1	12	39	1.49
8421280--8421465	22	8.8	22	70	14	70	48	4	10	36	1.58
8421497--8421620	22	5.6	22	71	7	81	56	2	5	35	1.36
8421506--8421620	44	2.6	44	83	2	133	57	2	5	34	1.35
8422735--8422767	15	2.2	15	94	0	57	21	0	21	57	1.41
8422747--8422788	21	2.0	21	90	0	66	19	0	30	50	1.48
8422794--8422874	30	2.8	29	77	3	81	16	2	34	46	1.60
8422820--8422945	29	4.4	28	74	7	83	18	3	31	46	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195