genome.fa.s112.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  49  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10228517--10228558	22	1.9	22	100	0	84	30	0	0	69	0.89
10231748--10231772	13	1.9	13	100	0	50	16	12	0	72	1.13
10233994--10234422	216	2.0	216	90	2	684	25	18	22	33	1.96
10240387--10240434	22	2.2	21	85	3	60	22	0	10	66	1.22
10240575--10240627	25	2.2	23	86	6	70	11	1	18	67	1.30
10241275--10241388	21	5.1	21	81	6	95	33	4	8	53	1.52
10241285--10241388	23	4.7	23	82	12	119	33	4	8	52	1.53
10241398--10241447	24	2.1	24	85	7	66	22	4	10	64	1.41
10247614--10247681	34	2.0	34	82	5	84	27	11	17	42	1.84
10247127--10247766	319	2.0	318	90	0	992	32	11	15	40	1.83
10247887--10248015	46	2.8	46	80	4	136	37	6	17	37	1.76
10248336--10248374	18	2.2	18	85	0	51	41	7	12	38	1.72
10248361--10248414	17	3.2	17	81	0	63	42	18	7	31	1.78
10248384--10248426	17	2.5	17	76	0	50	34	23	11	30	1.90
10248506--10248585	16	4.9	16	86	4	88	36	12	13	37	1.83
10248523--10248580	16	3.6	16	95	2	98	32	12	13	41	1.82
10249031--10249077	6	8.0	6	92	4	51	25	0	8	65	1.20
10249038--10249077	17	2.3	18	86	4	55	22	0	10	67	1.20
10249032--10249076	23	2.0	23	86	0	63	24	0	8	66	1.20
10249987--10250027	17	2.3	19	87	8	59	7	7	2	82	0.91
10249987--10250029	8	5.1	8	80	8	50	6	9	2	81	0.95
10250099--10250245	21	7.0	22	69	19	93	31	5	10	52	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10250171--10250266	42	2.4	40	84	8	126	36	5	10	47	1.60
10250228--10250294	32	2.1	32	83	8	82	38	8	8	43	1.68
10250270--10250314	14	3.1	14	87	3	63	28	8	11	51	1.68
10256651--10256985	173	1.9	173	93	1	573	33	17	10	38	1.83
10259075--10259126	14	3.8	14	82	12	63	46	7	0	46	1.31
10259075--10259128	26	2.1	26	92	0	90	46	7	0	46	1.31
10259122--10259173	23	2.3	22	80	3	59	59	1	0	38	1.08
10259121--10259195	35	2.0	35	82	10	87	58	1	0	40	1.06
10259122--10259194	30	2.5	28	72	14	76	60	1	0	38	1.06
10259652--10259701	10	5.0	10	85	7	66	56	4	0	40	1.18
10259851--10259892	20	2.2	20	82	4	50	64	2	0	33	1.07
10259860--10259912	17	3.0	17	78	8	52	54	1	0	43	1.11
10260030--10260084	28	1.9	28	85	10	76	45	3	1	49	1.30
10260072--10260120	19	2.6	19	80	6	55	16	6	4	73	1.19
10260223--10260388	73	2.3	72	75	10	160	40	1	6	51	1.34
10260463--10260583	10	12.2	10	68	14	63	36	0	7	55	1.34
10260655--10260693	20	1.9	20	89	5	60	35	0	7	56	1.28
10260640--10260713	29	2.4	29	80	10	78	40	0	4	55	1.19
10262643--10262672	15	1.9	16	93	6	53	53	0	0	46	1.00
10262644--10262680	17	2.2	17	90	9	58	48	0	0	51	1.00
10264963--10265020	27	2.2	26	87	9	82	36	13	1	48	1.53
10268399--10268451	21	2.6	21	76	8	56	20	20	11	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10269166--10270026	161	5.4	159	79	4	710	41	14	10	32	1.80
10276068--10276104	18	2.1	18	94	0	65	27	0	18	54	1.44
10276086--10276354	62	4.3	62	73	8	206	36	8	9	44	1.68
10276086--10276632	62	8.7	63	68	11	185	36	9	10	43	1.72
10276480--10276745	63	4.2	62	69	11	166	37	11	13	37	1.81
10276400--10276729	128	2.6	129	85	4	400	36	10	13	39	1.79
10276761--10277033	137	2.0	137	97	0	519	31	20	8	40	1.82
10279004--10279064	23	2.7	21	73	19	52	24	4	4	65	1.32
10280715--10280852	60	2.2	60	84	3	177	30	14	15	39	1.87
10280736--10280855	60	2.0	61	88	1	179	31	15	13	40	1.85
10283609--10283689	42	1.9	42	92	0	135	58	4	9	27	1.51
10285246--10285270	11	2.3	11	100	0	50	20	0	0	80	0.72
10285647--10285676	13	2.4	13	94	5	53	43	3	0	53	1.17
10290597--10290678	15	5.2	16	71	16	55	29	10	4	54	1.56
10291391--10291450	30	2.0	30	100	0	120	46	26	6	20	1.75
10291462--10291512	25	2.0	25	100	0	102	31	15	15	37	1.89
10293151--10293198	25	2.0	25	87	4	71	25	16	12	45	1.82
10297027--10297059	16	2.1	16	100	0	66	48	6	12	33	1.65
10302181--10302212	16	2.0	16	93	0	55	34	6	40	18	1.76
10313012--10313076	33	2.0	33	84	6	87	32	16	7	43	1.77
10325387--10325429	21	2.0	21	82	8	52	25	16	4	53	1.62
10335009--10335054	22	2.0	23	83	4	58	43	6	4	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10336124--10336162	15	2.4	17	87	8	55	30	5	0	64	1.15
10337746--10337795	22	2.3	22	79	6	57	18	2	10	70	1.25
10337841--10337930	46	2.0	46	86	0	126	44	15	7	32	1.75
10338996--10339152	81	2.0	77	85	5	206	22	23	9	44	1.82
10340922--10340953	12	2.6	13	85	14	50	0	15	0	84	0.63
10342497--10342540	18	2.4	18	100	0	88	22	4	27	45	1.72
10348761--10348906	73	2.0	73	97	0	274	21	14	7	56	1.62
10351882--10351906	13	1.9	13	100	0	50	16	4	8	72	1.24
10352413--10352438	3	8.7	3	100	0	52	30	0	0	69	0.89
10352952--10352982	15	2.1	14	94	5	53	0	9	0	90	0.46
10360310--10360368	27	2.2	26	85	8	75	18	3	35	42	1.67
10360324--10360499	7	26.4	7	74	14	90	16	1	35	46	1.55
10360310--10360385	26	2.9	27	82	9	77	15	2	36	44	1.61
10364560--10364596	2	18.5	2	100	0	74	51	0	0	48	1.00
10368888--10368929	21	2.0	20	90	4	66	83	4	11	0	0.79
10369028--10369086	26	2.4	24	83	8	73	79	1	13	5	0.97
10369449--10369479	16	1.9	16	93	0	53	80	12	6	0	0.89
10371175--10371213	18	2.2	18	86	9	53	82	0	7	10	0.86
10371475--10371516	20	2.2	20	87	12	61	76	0	7	16	1.00
10371024--10372165	569	2.0	569	89	4	1741	53	6	11	28	1.61
10371895--10371940	20	2.4	20	85	7	60	58	4	0	36	1.18
10372048--10372099	24	2.1	23	82	10	59	76	0	5	17	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10371077--10372165	573	1.9	563	88	5	1512	53	6	10	29	1.59
10372480--10372522	18	2.4	18	84	7	52	62	0	2	34	1.08
10373104--10373130	2	13.5	2	100	0	54	51	0	0	48	1.00
10376086--10376126	17	2.4	16	80	11	55	78	0	14	7	0.96
10377127--10377222	50	1.9	50	80	0	111	35	10	7	46	1.66
10377493--10377580	32	2.8	32	80	0	95	36	12	19	31	1.89
10377894--10377945	22	2.4	21	81	12	61	36	15	5	42	1.71
10377976--10378134	22	7.3	22	72	16	73	35	17	7	39	1.78
10377960--10378134	67	2.7	64	83	7	192	34	16	7	41	1.76
10387691--10387782	47	2.0	47	100	0	184	28	8	11	51	1.68
10391098--10391217	26	4.6	26	80	4	125	16	23	26	33	1.96
10391101--10391210	52	2.1	52	87	0	157	16	21	27	34	1.95
10391373--10391472	3	33.3	3	86	0	137	31	2	3	64	1.20
10392429--10392458	15	2.0	15	93	0	51	83	0	3	13	0.77
10403367--10403795	120	3.6	120	81	5	474	20	23	13	42	1.88
10404223--10404256	17	1.9	18	94	5	61	8	8	0	82	0.85
10405032--10405074	9	4.8	9	82	8	52	11	2	2	83	0.83
10405026--10405069	17	2.6	17	89	7	63	9	4	2	84	0.85
10405178--10405228	8	6.0	8	82	13	66	84	0	3	11	0.75
10405180--10405228	26	2.0	25	92	8	82	85	0	4	10	0.71
10405716--10405839	59	2.1	59	84	3	160	41	13	9	35	1.78
10405945--10406038	29	3.2	29	78	4	91	42	22	13	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10415928--10416001	20	3.7	19	77	13	69	17	0	36	45	1.49
10415972--10415996	13	1.9	13	100	0	50	16	0	32	52	1.44
10420998--10421056	27	2.2	27	87	3	84	37	8	13	40	1.75
10422313--10422363	20	2.3	23	80	9	63	27	7	13	50	1.69
10422340--10422493	32	4.8	32	74	7	96	29	5	12	52	1.62
10422404--10422492	33	2.7	33	84	5	110	28	6	12	52	1.64
10422461--10422518	20	2.8	21	82	10	66	31	8	10	50	1.67
10422497--10422616	56	2.1	56	82	11	140	30	4	10	55	1.51
10426745--10427290	305	1.8	301	80	4	670	33	14	15	36	1.87
10430754--10430872	52	2.3	52	91	2	186	38	24	10	26	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195