genome.fa.s112.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  83  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15705921--15705973	27	2.0	27	92	7	90	32	26	15	26	1.95
15706822--15706874	26	2.0	26	100	0	106	26	26	20	26	1.99
15706848--15708364	707	2.1	704	86	4	2068	25	23	23	26	2.00
15708407--15708460	26	2.1	26	100	0	108	24	25	22	27	2.00
15709144--15710782	870	1.9	865	86	4	2323	26	23	23	25	2.00
15712499--15712561	26	2.4	26	100	0	126	19	22	23	34	1.96
15712754--15712785	12	2.7	12	95	0	55	12	34	18	34	1.89
15713429--15713481	26	2.0	26	92	0	88	26	22	20	30	1.98
15710730--15715116	936	4.8	896	83	5	5227	25	24	23	25	2.00
15714365--15717246	705	4.1	715	85	3	3786	26	23	22	26	2.00
15718441--15718495	25	2.3	25	87	6	78	30	20	21	27	1.98
15719477--15722356	704	4.1	705	90	2	4152	26	23	23	26	2.00
15722467--15722517	26	2.0	26	88	0	75	29	23	15	31	1.95
15723657--15723708	26	2.0	26	88	0	77	51	15	9	23	1.72
15722493--15723957	719	2.0	713	85	4	1982	26	24	22	25	2.00
15723211--15727909	897	5.2	892	82	7	5265	25	24	24	25	2.00
15727910--15727962	26	2.0	26	88	0	79	30	24	18	26	1.98
15728090--15728147	26	2.2	26	93	3	98	27	24	20	27	1.99
15728964--15729016	26	2.0	26	96	0	97	24	26	22	26	2.00
15730910--15730963	27	2.0	27	92	3	92	25	25	20	27	1.99
15732218--15732250	17	1.9	17	93	0	57	15	24	39	21	1.91
15731088--15733845	587	4.7	586	95	2	4894	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15732805--15732837	17	1.9	17	93	0	57	15	24	39	21	1.91
15735026--15735078	26	2.0	26	88	0	79	26	22	20	30	1.98
15739325--15739403	26	3.0	26	98	0	149	26	21	25	26	1.99
15736962--15754323	875	19.8	871	82	7	19060	25	23	24	26	2.00
15742901--15742953	26	2.0	26	85	7	72	30	20	20	28	1.98
15744665--15744717	26	2.0	26	96	0	97	28	20	24	26	1.99
15748135--15748186	25	2.0	26	88	3	79	26	19	28	25	1.98
15752501--15752553	26	2.0	26	88	0	79	28	16	24	30	1.97
15753393--15753445	26	2.0	26	92	0	88	26	16	26	30	1.97
15754297--15754349	26	2.0	26	92	0	88	30	20	24	24	1.99
15754961--15755012	26	2.0	26	88	3	79	26	13	25	34	1.93
15758288--15758341	26	2.1	26	100	0	108	27	25	18	27	1.98
15756856--15764046	874	8.1	878	82	7	7987	25	25	23	25	2.00
15760067--15760119	26	2.0	26	96	0	97	26	24	20	28	1.99
15761848--15761926	26	3.0	26	90	0	113	29	24	18	27	1.98
15765161--15765283	61	2.0	61	87	0	174	11	14	50	23	1.75
15766833--15766885	26	2.0	26	96	0	97	28	26	18	26	1.98
15765218--15767568	882	2.7	863	88	3	3434	25	24	23	26	2.00
15767542--15767594	26	2.0	26	96	0	97	26	28	20	24	1.99
15768433--15768485	26	2.0	26	92	0	88	30	22	18	28	1.98
15768410--15769935	735	2.1	738	88	2	2246	26	23	22	26	2.00
15770068--15770120	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15771544--15771596	26	2.0	26	100	0	106	26	26	20	26	1.99
15772444--15772496	26	2.0	26	88	0	79	28	26	18	26	1.98
15773504--15773556	26	2.0	26	96	0	97	28	26	20	24	1.99
15772629--15774516	893	2.1	890	86	3	2594	25	25	23	24	2.00
15774393--15774445	26	2.0	26	96	0	97	28	26	18	26	1.98
15776074--15776126	26	2.0	26	88	0	79	26	22	18	32	1.97
15777478--15777530	26	2.0	26	96	0	97	24	26	22	26	2.00
15778471--15778560	47	1.9	47	97	0	171	23	23	42	11	1.86
15779499--15779551	26	2.0	26	88	0	79	30	24	16	28	1.97
15781119--15781150	15	2.1	15	94	0	55	15	21	53	9	1.70
15782937--15782989	26	2.0	26	92	0	88	28	24	20	26	1.99
15782075--15784513	897	2.7	887	87	3	3256	26	24	23	25	2.00
15787028--15787080	26	2.0	26	92	0	88	28	24	18	28	1.98
15785248--15787742	910	2.8	899	79	10	2844	26	24	23	25	2.00
15790087--15790139	26	2.0	26	96	0	97	32	24	16	26	1.97
15790974--15791027	26	2.1	26	96	0	99	25	25	20	27	1.99
15789219--15793282	872	4.6	894	85	4	5143	26	24	23	26	2.00
15792749--15792801	26	2.0	26	92	0	88	33	26	13	26	1.93
15793418--15793470	26	2.0	26	92	0	88	24	24	20	30	1.99
15794324--15794376	26	2.0	26	92	0	88	30	26	16	26	1.97
15795232--15795284	26	2.0	26	88	0	79	30	24	16	28	1.97
15793280--15797264	898	4.5	885	82	7	4566	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15796873--15797664	395	2.0	395	99	0	1557	20	26	29	23	1.99
15800014--15800065	25	2.0	26	88	3	79	23	28	21	26	1.99
15797270--15807057	875	11.2	874	83	5	11160	25	25	23	25	2.00
15803486--15803538	26	2.0	26	96	0	97	26	24	20	28	1.99
15805250--15805302	26	2.0	26	85	7	72	28	20	20	30	1.98
15807031--15807086	26	2.2	26	100	0	112	33	23	16	26	1.95
15808655--15808733	26	3.0	26	94	0	140	26	24	21	27	1.99
15811330--15811382	26	2.0	26	92	0	88	28	24	18	28	1.98
15812231--15812283	26	2.0	26	92	0	88	28	24	18	28	1.98
15810477--15812995	901	2.8	896	85	4	3416	25	24	23	25	2.00
15812969--15813021	26	2.0	26	96	0	97	26	24	20	28	1.99
15813873--15813925	26	2.0	26	100	0	106	26	26	20	26	1.99
15815485--15815537	26	2.0	26	96	0	97	26	24	20	28	1.99
15814767--15816255	744	2.0	744	91	1	2425	26	24	23	26	2.00
15818114--15818166	26	2.0	26	85	0	70	30	22	16	30	1.96
15819017--15819069	26	2.0	26	92	0	88	26	22	22	28	1.99
15820752--15820813	26	2.4	26	97	0	115	29	25	19	25	1.99
15819823--15824310	895	5.0	893	85	4	5753	26	24	23	25	2.00
15823439--15823498	26	2.4	26	81	10	72	25	26	20	28	1.99
15824142--15824466	171	1.9	171	85	0	443	17	31	29	21	1.96
15824509--15824559	26	2.0	26	96	0	93	27	23	19	29	1.98
15827347--15827399	27	2.0	27	100	0	106	32	26	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15828243--15828296	26	2.1	26	96	0	99	25	25	20	27	1.99
15826475--15830548	898	4.6	889	84	6	4716	26	23	23	26	2.00
15830684--15830736	26	2.0	26	92	0	88	24	24	20	30	1.99
15832492--15832544	26	2.0	26	88	0	79	30	24	16	28	1.97
15833820--15833869	26	1.9	26	84	8	66	54	12	12	22	1.69
15836003--15836053	26	2.0	26	96	0	93	27	25	15	31	1.96
15836903--15836955	26	2.0	26	88	0	79	26	28	16	28	1.97
15831613--15845496	862	15.8	859	82	7	14183	26	25	23	25	2.00
15840360--15840412	26	2.0	26	96	0	97	32	24	16	26	1.97
15842121--15842173	26	2.0	26	85	7	72	28	20	20	30	1.98
15845584--15850098	905	5.1	892	83	6	5259	25	24	23	25	2.00
15849171--15849230	26	2.4	26	81	10	72	25	26	20	28	1.99
15849874--15850257	163	2.4	162	82	5	438	19	29	28	22	1.98
15850231--15850283	26	2.0	26	92	0	88	26	26	18	28	1.98
15853504--15853555	26	2.0	26	100	0	104	26	26	19	26	1.99
15853529--15855012	712	2.1	717	91	1	2381	26	24	23	25	2.00
15855118--15855168	26	2.0	26	96	0	93	27	27	17	27	1.98
15854243--15856087	904	2.0	901	89	1	2829	25	25	24	25	2.00
15860253--15860304	26	2.0	26	96	0	95	28	25	19	26	1.98
15856085--15863810	874	8.7	876	83	6	8371	26	24	23	25	2.00
15864925--15864977	26	2.0	26	85	0	70	30	22	16	30	1.96
15864309--15867334	906	3.4	864	84	6	3544	27	23	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15866691--15866742	26	2.0	26	84	0	68	26	23	21	28	1.99
15867400--15867452	26	2.0	26	92	7	90	26	22	20	30	1.98
15866632--15868731	699	3.0	695	91	2	3243	28	22	22	26	1.99
15868101--15868152	26	2.0	25	92	3	86	28	21	21	28	1.98
15868055--15872536	884	5.1	881	84	6	5592	26	24	24	25	2.00
15872786--15872838	26	2.0	26	96	0	97	24	28	20	26	1.99
15872970--15873022	26	2.0	26	100	0	106	26	26	20	26	1.99
15873964--15875863	695	2.8	685	87	5	2564	27	23	23	26	2.00
15878537--15878591	28	2.0	28	86	13	78	25	23	23	27	2.00
15879472--15879523	26	2.0	26	92	0	86	34	23	15	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195