genome.fa.s112.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  32  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7121435--7121467	16	2.0	17	88	5	50	48	6	3	42	1.43
7125718--7125745	13	2.2	13	100	0	56	42	0	0	57	0.99
7125687--7125747	21	2.8	22	75	5	61	37	1	0	60	1.07
7126590--7126625	16	2.2	16	90	0	54	50	16	16	16	1.79
7129708--7129748	20	2.0	21	86	13	59	31	4	7	56	1.48
7129776--7129852	31	2.3	36	84	10	101	40	0	2	57	1.13
7137735--7137764	15	1.9	16	93	6	53	80	0	13	6	0.91
7137832--7137865	17	2.0	17	88	0	50	76	8	2	11	1.12
7138041--7138083	16	2.9	14	83	13	50	79	6	0	13	0.93
7138164--7138203	21	2.0	21	90	5	64	50	0	0	50	1.00
7138208--7138251	20	2.2	20	88	4	63	56	0	0	43	0.99
7155193--7155218	7	3.7	7	100	0	52	38	0	0	61	0.96
7155207--7155248	23	2.0	22	86	13	61	38	0	0	61	0.96
7155207--7155248	11	3.9	11	84	12	52	38	0	0	61	0.96
7157949--7158555	60	10.1	59	81	6	679	46	6	10	35	1.65
7161765--7161801	15	2.5	15	86	0	56	21	21	5	51	1.68
7163169--7163205	18	2.1	18	100	0	74	45	37	0	16	1.47
7170051--7170946	86	10.6	86	76	6	591	21	18	14	44	1.85
7170419--7170570	76	2.0	77	88	1	225	22	17	13	46	1.83
7170215--7170827	335	1.8	333	82	2	798	22	18	14	44	1.85
7171576--7171603	11	2.5	11	100	0	56	32	0	14	53	1.41
7172125--7172612	60	8.1	60	77	11	346	48	5	10	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7172214--7172608	178	2.2	182	83	7	486	47	6	11	34	1.66
7172125--7172612	120	4.1	119	78	10	467	48	5	10	34	1.62
7173561--7173592	15	2.1	15	94	0	55	15	3	18	62	1.45
7174401--7174433	2	17.0	2	87	6	50	45	3	0	51	1.16
7174404--7174435	15	2.1	15	94	0	55	43	3	0	53	1.16
7174686--7174719	17	1.9	18	88	5	52	44	8	2	44	1.50
7175124--7175161	18	2.1	18	90	0	58	57	0	0	42	0.98
7176254--7176328	10	7.6	10	77	8	66	52	0	1	46	1.09
7176280--7176359	9	9.0	9	72	10	67	56	1	2	40	1.21
7176286--7176342	17	3.2	19	83	14	77	57	0	3	38	1.16
7176291--7176351	16	3.6	16	82	12	70	57	0	3	39	1.15
7183642--7183687	23	2.0	23	83	8	58	43	8	0	47	1.34
7187714--7187738	12	2.1	12	100	0	50	76	0	0	24	0.80
7191744--7191786	20	2.2	20	83	8	52	37	2	0	60	1.10
7191811--7191852	11	3.9	11	81	3	50	47	2	0	50	1.14
7191945--7191992	19	2.5	19	77	12	62	35	0	0	64	0.94
7197657--7197782	52	2.4	53	85	2	148	25	20	10	43	1.83
7197808--7197850	22	2.0	22	95	0	77	48	30	0	20	1.50
7198100--7198208	25	4.4	25	78	7	116	18	33	9	39	1.82
7198097--7198208	49	2.3	50	82	4	138	19	33	8	38	1.83
7198706--7198860	52	3.0	53	85	7	203	25	26	9	38	1.86
7198888--7198927	11	3.6	11	79	0	53	50	25	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7198886--7198928	22	2.0	22	95	0	77	48	25	0	25	1.51
7200621--7200651	16	1.9	16	93	0	53	22	3	0	74	0.96
7201110--7201183	29	2.8	25	78	15	71	47	1	1	50	1.18
7203776--7203801	2	13.0	2	100	0	52	0	0	50	50	1.00
7205972--7206027	24	2.3	23	76	11	58	57	0	1	41	1.09
7210134--7211550	221	6.4	222	83	4	1552	48	8	12	30	1.71
7210917--7210969	21	2.5	21	72	6	54	60	5	3	30	1.37
7211529--7211571	21	2.0	21	81	0	50	37	11	20	30	1.89
7211568--7212158	216	2.7	214	78	7	550	53	6	9	30	1.58
7211802--7212524	400	1.8	397	79	7	858	54	5	8	31	1.53
7212498--7212540	16	2.6	16	85	7	50	67	0	6	25	1.15
7213191--7213276	20	4.4	19	71	15	61	61	2	2	33	1.21
7213716--7213741	10	2.6	10	100	0	52	92	0	7	0	0.39
7213710--7213744	17	2.1	16	89	5	52	91	0	5	2	0.50
7216671--7216721	21	2.5	20	87	9	68	39	1	0	58	1.09
7216862--7216915	22	2.5	22	75	3	56	9	5	5	79	1.04
7216862--7216897	16	2.2	17	90	5	56	8	2	5	83	0.89
7220062--7220111	23	2.2	23	100	0	100	22	20	18	40	1.92
7221490--7221554	18	3.3	18	68	25	51	55	3	1	40	1.25
7221694--7221738	11	4.2	11	88	5	65	60	0	4	35	1.17
7221691--7221740	21	2.4	22	80	10	68	56	0	6	38	1.24
7222046--7222085	11	3.8	10	87	6	53	52	5	0	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7222039--7222086	22	2.2	22	82	14	64	52	6	0	41	1.27
7222105--7222317	29	7.5	29	71	12	90	50	2	3	43	1.33
7222129--7222456	10	31.7	10	66	19	86	47	2	3	46	1.32
7222143--7222228	45	1.9	45	83	4	111	47	3	3	45	1.36
7222208--7222311	18	6.2	17	71	17	76	50	1	3	43	1.31
7222249--7222456	10	20.8	10	70	16	92	46	0	3	49	1.26
7222273--7222546	21	13.0	21	78	5	248	44	1	4	49	1.32
7222163--7222314	84	1.8	81	84	4	205	50	2	3	43	1.34
7222240--7222387	46	3.3	45	81	5	147	47	1	2	47	1.24
7222204--7222325	54	2.2	52	80	16	140	50	1	3	44	1.28
7222312--7222529	62	3.5	63	78	6	203	43	1	5	50	1.35
7222312--7222546	83	2.8	81	80	8	231	42	1	5	50	1.34
7223158--7223194	18	2.0	19	89	5	58	40	24	13	21	1.89
7223729--7223849	64	1.9	64	93	1	208	45	4	6	42	1.51
7223856--7224175	115	2.8	113	79	2	336	45	7	10	35	1.68
7224082--7224228	73	2.0	74	81	7	174	48	6	8	36	1.58
7224280--7224358	37	2.1	37	88	0	113	50	6	1	41	1.36
7228700--7228754	22	2.5	22	84	0	74	34	0	5	60	1.20
7229096--7229126	13	2.5	12	90	10	53	6	0	3	90	0.55
7231276--7231349	38	1.9	39	83	8	98	39	1	0	59	1.06
7231314--7231390	29	2.6	28	76	10	73	41	2	0	55	1.13
7231480--7231511	2	16.0	2	93	0	55	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7241238--7241286	14	3.1	16	82	11	66	46	2	0	51	1.12
7248598--7248640	15	2.8	15	86	10	52	55	0	0	44	0.99
7251315--7251347	12	2.7	13	86	13	52	69	0	0	30	0.88
7259335--7259359	12	2.1	12	100	0	50	60	0	0	40	0.97
7262096--7262135	19	2.0	21	85	9	57	15	12	0	72	1.12
7262096--7262135	20	2.1	19	85	4	53	15	12	0	72	1.12
7262129--7262192	31	2.1	31	81	0	74	51	3	3	42	1.33
7263128--7263199	29	2.5	30	77	8	78	51	0	2	45	1.15
7270315--7270407	6	15.5	6	71	9	57	18	3	3	75	1.08
7271054--7271093	19	2.1	19	90	0	62	42	22	12	22	1.87
7271473--7271517	21	2.1	21	84	8	56	17	4	2	75	1.07
7271482--7271572	40	2.3	41	81	12	109	14	7	2	75	1.11
7271494--7271575	12	7.2	12	72	20	52	13	7	2	76	1.09
7271666--7271772	56	1.9	56	86	3	153	39	6	17	36	1.76
7282187--7282247	9	6.9	9	88	11	83	86	0	3	9	0.67
7282189--7282245	17	3.4	16	85	9	78	85	0	3	10	0.70
7282188--7282235	24	2.0	24	95	4	87	87	0	2	10	0.62
7282187--7282259	21	3.3	22	76	19	80	83	0	5	10	0.80
7282185--7282260	10	7.0	11	81	14	52	80	0	7	11	0.91
7282187--7282247	1	61.0	1	76	0	50	86	0	3	9	0.67
7283243--7283412	41	4.1	41	89	0	223	24	14	22	38	1.92
7283578--7283679	6	16.5	6	74	16	68	18	2	1	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7283594--7283633	17	2.2	18	86	8	55	20	5	0	75	0.99
7283602--7283691	17	5.2	17	75	10	69	21	2	2	74	1.03
7284037--7284086	22	2.3	22	80	10	59	54	8	24	14	1.66
7284686--7284815	5	25.6	5	72	16	74	20	4	2	73	1.13
7284686--7284815	16	8.5	15	72	18	74	20	4	2	73	1.13
7284731--7284810	32	2.5	32	84	8	101	16	6	0	77	0.96
7284741--7284815	37	2.1	36	85	7	98	16	5	0	78	0.92
7288743--7288781	16	2.4	16	86	4	51	48	5	5	41	1.47
7289960--7290136	59	3.0	58	84	4	230	31	7	7	53	1.56
7290146--7290314	51	3.0	55	80	13	195	44	8	4	42	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195