genome.fa.s112.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  60  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12199472--12199565	20	4.5	21	86	4	120	3	3	36	57	1.31
12199591--12199674	6	13.3	6	76	14	80	16	2	35	45	1.61
12199920--12200091	19	8.9	19	80	2	200	19	5	37	37	1.76
12199901--12199982	38	2.2	39	80	10	98	19	2	40	37	1.65
12199941--12200092	58	2.6	57	81	4	160	20	5	35	38	1.77
12200993--12201041	22	2.2	22	77	0	53	63	8	10	18	1.50
12201002--12201049	22	2.2	22	88	0	69	58	8	14	18	1.61
12202397--12202442	18	2.6	18	96	3	85	54	6	21	17	1.65
12205789--12206965	605	1.9	607	92	3	1963	34	18	13	32	1.90
12210344--12210520	86	2.0	87	89	3	266	17	19	11	51	1.75
12218638--12218702	30	2.2	30	82	0	85	55	1	0	43	1.09
12220095--12220368	139	2.0	138	87	2	397	40	12	13	33	1.82
12222645--12222698	25	2.2	25	93	0	90	29	22	9	38	1.85
12222734--12222782	19	2.6	19	74	9	55	40	16	10	32	1.82
12224376--12224410	12	2.9	12	91	0	61	37	34	11	17	1.85
12224657--12224711	25	2.2	25	78	12	60	41	14	14	29	1.85
12225716--12225768	3	17.7	3	96	0	88	67	3	0	28	1.07
12232452--12232503	22	2.4	22	83	6	61	32	19	13	34	1.90
12232444--12233133	164	4.2	163	78	6	626	32	15	14	37	1.88
12232443--12233133	328	2.1	327	80	5	786	32	15	14	37	1.89
12233200--12233245	18	2.3	18	85	14	56	73	4	4	17	1.15
12235091--12235166	10	7.5	10	69	17	50	75	0	1	23	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12235046--12235138	32	2.8	34	79	11	95	73	2	2	22	1.05
12235091--12235165	23	3.0	23	72	14	60	76	0	1	22	0.87
12235837--12235872	16	2.3	15	90	4	54	80	0	13	5	0.88
12235838--12235879	15	2.7	15	75	17	50	76	0	14	9	1.02
12236420--12236456	12	3.0	12	88	7	56	83	2	13	0	0.74
12237312--12237674	33	10.7	33	69	14	164	36	19	14	29	1.91
12237346--12237436	43	2.1	44	81	6	105	38	18	12	30	1.87
12237389--12237674	33	8.6	33	73	10	176	36	19	14	29	1.91
12237389--12237674	66	4.3	67	77	6	228	36	19	14	29	1.91
12237389--12237674	99	2.9	99	78	8	246	36	19	14	29	1.91
12237860--12237985	35	3.6	35	79	4	101	16	22	13	47	1.81
12238058--12238097	16	2.5	16	95	0	71	15	25	7	52	1.68
12238121--12238352	35	6.6	36	71	9	129	18	17	10	52	1.73
12238118--12238348	106	2.2	105	81	5	261	19	17	10	51	1.74
12238191--12238352	70	2.3	70	81	5	175	18	18	10	52	1.73
12238365--12238606	62	3.9	62	76	6	224	21	23	14	40	1.90
12238434--12238537	31	3.4	31	70	5	84	22	22	13	42	1.88
12238385--12238623	124	1.9	124	84	6	315	21	22	14	41	1.89
12239275--12239305	10	3.1	10	90	0	53	51	29	9	9	1.66
12240355--12240745	204	1.9	203	92	1	658	30	11	20	37	1.88
12241170--12241208	18	2.2	18	86	9	53	61	0	0	38	0.96
12241467--12241531	25	2.5	26	80	9	80	53	26	4	15	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12241892--12241939	24	2.0	25	83	4	62	35	4	10	50	1.56
12246199--12246238	20	2.0	21	90	5	64	20	7	0	72	1.08
12246211--12246248	17	2.3	16	86	13	51	26	2	0	71	1.00
12246197--12246245	20	2.5	18	78	18	53	22	6	0	71	1.08
12247941--12248095	58	2.7	58	83	4	152	45	19	14	21	1.85
12248702--12248941	64	3.7	64	81	5	250	42	16	13	27	1.86
12249710--12249755	23	2.0	24	82	4	58	21	19	2	56	1.52
12252490--12252533	12	3.7	12	76	11	54	54	6	13	25	1.63
12252496--12252542	24	2.0	24	87	8	69	55	8	10	25	1.62
12255755--12255877	43	2.9	42	76	10	106	34	6	17	41	1.75
12256042--12256083	18	2.3	18	84	8	50	33	14	11	40	1.82
12256116--12256201	44	2.0	44	86	4	120	33	10	8	47	1.67
12256146--12256196	17	2.9	17	80	8	50	31	9	7	50	1.64
12256174--12256286	51	2.2	52	84	4	158	35	17	7	39	1.77
12256211--12256244	17	2.0	17	94	0	59	29	20	5	44	1.75
12256284--12256336	22	2.4	22	77	0	52	37	13	11	37	1.80
12257587--12257649	28	2.5	24	77	12	65	71	4	9	14	1.28
12260171--12260220	2	25.0	2	100	0	100	50	0	0	50	1.00
12264728--12265027	42	7.1	42	80	6	293	26	12	16	44	1.83
12264728--12265027	87	3.5	83	81	8	340	26	12	16	44	1.83
12264728--12265038	129	2.4	128	84	5	396	27	12	15	45	1.82
12265419--12265448	7	4.4	7	91	8	53	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12265421--12265446	13	2.0	13	100	0	52	23	0	0	76	0.78
12266493--12266545	15	3.5	15	78	0	61	20	1	5	71	1.16
12266447--12266545	30	3.4	29	76	18	98	22	4	4	69	1.22
12266428--12266521	4	24.5	4	75	12	81	21	4	2	72	1.12
12270660--12270704	18	2.6	18	82	6	58	26	6	4	62	1.39
12270976--12271300	29	11.3	28	74	9	226	54	2	2	40	1.24
12271036--12271078	20	2.1	21	83	12	54	53	4	0	41	1.21
12271073--12271114	17	2.5	17	84	3	50	52	2	2	42	1.27
12271126--12271596	21	22.4	21	67	17	94	51	1	4	43	1.30
12271238--12271301	30	2.1	32	85	5	87	60	1	0	37	1.06
12271197--12271356	71	2.2	73	80	13	188	55	0	1	42	1.12
12271124--12271382	11	22.9	11	67	21	83	54	1	2	41	1.22
12271365--12271407	20	2.3	19	80	11	54	51	2	2	44	1.27
12271458--12271495	20	1.9	20	100	0	76	50	0	7	42	1.31
12272126--12272206	37	2.2	37	90	0	126	41	1	6	50	1.35
12272219--12272628	112	3.6	112	76	7	371	37	12	6	43	1.67
12272431--12272642	114	1.9	113	79	5	239	35	14	4	46	1.64
12274805--12274850	23	2.0	23	83	8	58	52	2	45	0	1.13
12275748--12275951	110	1.9	110	83	10	274	51	8	12	26	1.68
12287456--12287761	87	3.5	86	90	0	450	23	14	18	43	1.87
12287456--12287801	130	2.7	129	89	2	514	24	14	17	43	1.87
12287456--12287761	43	7.0	44	88	2	458	23	14	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12288016--12288044	13	2.1	14	93	6	51	20	0	3	75	0.94
12288097--12288131	10	3.5	10	92	0	52	68	0	8	22	1.16
12289525--12289730	111	1.9	108	86	8	290	49	8	16	25	1.74
12290932--12290973	20	2.0	21	90	9	68	33	4	4	57	1.41
12293810--12293860	25	2.0	25	100	0	102	33	11	23	31	1.91
12298711--12298769	6	9.8	6	86	0	55	72	3	22	1	1.08
12298711--12298764	12	4.4	12	83	4	72	72	3	24	0	1.01
12298711--12298764	18	2.9	18	79	15	65	72	3	24	0	1.01
12300603--12300662	29	2.1	29	84	3	77	56	3	5	35	1.37
12300639--12300740	17	5.6	18	68	20	70	52	1	1	43	1.23
12300665--12300740	14	5.4	14	71	16	50	53	2	1	42	1.23
12300656--12300825	29	6.0	29	75	3	166	54	2	2	40	1.26
12300656--12300825	57	3.0	58	84	2	193	54	2	2	40	1.26
12300820--12300862	14	3.1	14	79	0	50	69	0	0	30	0.88
12300770--12300858	46	1.9	46	82	8	110	59	1	0	39	1.05
12300671--12300860	57	3.3	57	81	5	145	57	2	1	38	1.20
12300704--12300943	11	24.1	11	65	24	72	55	1	2	40	1.23
12300813--12300943	18	6.3	21	69	16	78	54	1	3	40	1.25
12300967--12301268	22	14.2	21	67	13	127	49	1	3	45	1.31
12300952--12301091	38	3.3	38	72	22	127	50	2	2	43	1.31
12300887--12301104	89	2.4	90	86	5	314	50	2	2	43	1.30
12301148--12301264	10	11.3	10	65	16	51	49	0	5	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12301803--12301875	37	2.0	37	86	5	103	41	2	9	46	1.51
12301886--12302243	112	3.2	111	79	7	307	35	12	6	45	1.68
12301975--12302243	113	2.4	113	83	3	312	35	12	6	46	1.67
12301981--12302284	113	2.7	113	78	7	296	35	11	6	46	1.66
12305463--12305498	16	2.3	15	90	4	54	75	2	5	16	1.12
12306751--12307729	119	8.2	118	77	6	818	42	14	23	19	1.87
12306751--12307726	357	2.7	356	81	5	1066	42	14	23	19	1.87
12308794--12308844	21	2.6	19	85	11	68	1	11	5	80	0.97
12311640--12311729	43	2.1	43	89	0	135	67	4	11	16	1.36
12312573--12312606	13	2.6	14	86	13	54	5	5	2	85	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195