genome.fa.s112.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  79  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15226584--15226633	26	1.9	26	100	0	100	24	26	22	28	1.99
15228370--15228422	26	2.0	26	85	0	70	28	22	18	30	1.98
15225495--15229157	903	4.1	902	86	3	5003	25	24	24	25	2.00
15229140--15229184	23	2.0	23	82	4	56	22	17	48	11	1.78
15230071--15230121	26	2.0	26	88	0	75	27	23	19	29	1.98
15233644--15233694	26	2.0	26	96	0	93	31	27	13	27	1.94
15229194--15234911	896	6.4	893	86	3	7439	25	24	24	25	2.00
15234875--15234940	31	2.1	31	100	0	132	33	18	9	39	1.82
15236049--15236101	26	2.0	26	92	0	88	28	24	20	26	1.99
15237667--15238075	185	2.2	185	86	0	566	20	28	28	22	1.98
15238011--15238063	26	2.0	26	88	0	79	28	22	18	30	1.98
15238913--15238968	26	2.2	26	90	0	85	26	25	19	28	1.99
15237852--15239684	904	2.0	899	88	2	2712	24	25	25	24	2.00
15240523--15240572	26	1.9	26	91	0	82	24	26	20	30	1.98
15239770--15242100	895	2.6	899	91	1	3714	26	24	23	26	2.00
15244178--15244236	26	2.3	26	85	5	86	30	22	18	28	1.97
15245975--15246027	26	2.0	26	96	0	97	26	24	22	26	2.00
15243150--15253086	908	11.0	903	84	4	12007	25	24	24	25	2.00
15246886--15246936	26	2.0	26	100	0	102	29	23	19	27	1.98
15247345--15247399	27	2.2	26	83	9	69	56	20	3	20	1.57
15248686--15248738	26	2.0	26	96	0	97	26	24	20	28	1.99
15249581--15249633	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15250329--15250680	185	1.9	185	81	3	422	20	26	29	23	1.99
15251417--15251469	26	2.0	26	88	0	79	24	26	24	24	2.00
15252315--15252367	26	2.0	26	88	0	79	30	24	16	28	1.97
15253063--15253112	26	1.9	26	91	0	82	28	24	20	28	1.99
15253048--15255627	899	2.9	895	87	1	3685	25	24	23	26	2.00
15254859--15254909	26	2.0	26	92	0	84	29	21	17	31	1.96
15255601--15255653	26	2.0	26	96	0	97	26	24	22	26	2.00
15254839--15256366	743	2.1	740	89	3	2315	26	23	22	27	2.00
15257373--15257425	26	2.0	26	92	7	90	26	22	22	28	1.99
15258289--15258341	26	2.0	26	92	0	88	30	26	18	24	1.98
15256499--15266676	916	11.3	902	82	7	11582	25	24	24	25	2.00
15259195--15259247	26	2.0	26	92	7	90	26	22	22	28	1.99
15260977--15261029	26	2.0	26	96	0	97	26	24	22	26	2.00
15265416--15265492	26	3.0	26	98	0	145	29	15	20	33	1.94
15266370--15266422	26	2.0	26	88	0	79	30	24	16	28	1.97
15267931--15267983	26	2.0	26	88	0	79	28	16	24	30	1.97
15268834--15268910	26	3.0	26	98	0	145	33	20	15	29	1.94
15267941--15269782	921	2.0	924	86	4	2575	26	24	23	25	2.00
15273290--15273342	26	2.0	26	92	0	88	28	22	24	24	2.00
15275062--15275114	26	2.0	26	92	7	90	28	20	22	28	1.99
15275967--15276019	26	2.0	26	92	0	88	24	18	26	30	1.98
15272437--15280554	899	9.1	899	85	5	10252	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15278657--15278709	26	2.0	26	96	0	97	26	18	26	28	1.98
15280470--15280521	27	1.9	27	88	7	79	26	21	26	25	1.99
15281210--15281262	26	2.0	26	96	0	97	26	18	26	28	1.98
15279760--15281291	738	2.1	740	85	6	2099	27	23	23	25	2.00
15282108--15282160	26	2.0	26	88	0	79	24	24	26	24	2.00
15282896--15283247	185	1.9	185	84	3	467	23	28	26	21	1.99
15283941--15283993	26	2.0	26	96	0	97	26	18	26	28	1.98
15284795--15284847	26	2.0	26	96	0	97	28	20	24	26	1.99
15285700--15285750	26	2.0	26	92	0	84	29	17	23	29	1.97
15286135--15286189	27	2.2	26	83	9	69	20	3	20	56	1.57
15284259--15290317	908	6.7	900	84	4	7335	25	23	24	26	2.00
15287507--15287559	26	2.0	26	92	0	88	26	20	24	28	1.99
15289305--15289363	26	2.3	26	88	5	86	28	20	22	28	1.98
15292005--15292054	26	1.9	26	91	0	82	28	20	24	28	1.99
15292747--15292799	26	2.0	26	88	0	79	28	16	24	30	1.97
15293645--15293697	26	2.0	26	88	0	79	24	24	26	24	2.00
15294576--15294628	26	2.0	26	96	0	97	32	20	20	26	1.98
15295482--15295534	26	2.0	26	96	0	97	26	18	26	28	1.98
15296375--15296427	26	2.0	26	96	0	97	28	20	24	26	1.99
15297708--15297762	27	2.2	26	83	9	69	20	3	20	56	1.57
15299923--15299973	26	2.0	26	92	0	84	25	19	29	25	1.99
15300808--15300866	26	2.3	26	88	5	86	28	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15292031--15305107	897	14.6	898	82	6	15087	25	23	24	26	2.00
15301711--15301761	26	2.0	26	84	0	66	25	19	29	25	1.99
15305940--15305992	26	2.0	26	88	0	79	30	18	24	26	1.98
15306840--15306892	26	2.0	26	85	0	70	30	20	20	28	1.98
15305194--15307158	900	2.2	896	88	2	2953	25	24	25	24	2.00
15307168--15307206	21	1.9	21	89	5	62	20	30	28	20	1.98
15307243--15307291	13	4.1	12	84	10	64	2	10	0	87	0.62
15307240--15307285	22	2.1	22	92	8	76	4	8	0	86	0.68
15307244--15307285	21	2.0	22	90	4	68	2	9	0	88	0.61
15307238--15307286	25	2.0	25	88	8	73	6	8	0	85	0.73
15307243--15307291	23	2.1	23	88	7	73	2	10	0	87	0.62
15307376--15307452	12	5.9	14	71	20	51	29	0	1	68	0.97
15307384--15307438	28	2.0	28	92	0	92	30	0	0	69	0.89
15307376--15307483	19	5.6	20	76	17	70	29	1	1	66	1.12
15307415--15307455	18	2.2	19	87	12	59	24	0	2	73	0.96
15307447--15307513	28	2.4	27	85	7	89	25	8	1	64	1.31
15308360--15308409	17	2.8	18	82	8	59	10	0	6	84	0.79
15308439--15308514	19	4.2	16	78	15	62	14	5	2	77	1.05
15308536--15309109	60	9.7	60	85	4	751	43	7	13	34	1.73
15308536--15309109	120	4.9	118	89	4	863	43	7	13	34	1.73
15314762--15314814	26	2.0	26	88	0	79	28	20	22	28	1.99
15315090--15315128	21	1.9	21	89	5	62	20	30	28	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15315160--15315203	18	2.4	19	88	3	63	4	11	0	84	0.77
15315158--15315211	21	2.5	22	79	11	58	7	9	1	81	0.94
15315278--15315351	23	3.2	23	82	5	87	31	0	1	67	0.99
15315294--15315357	18	3.8	17	78	12	69	29	0	0	70	0.88
15315296--15315357	29	2.2	28	86	8	90	29	0	0	70	0.87
15315175--15315358	10	17.5	10	68	17	54	22	2	3	71	1.13
15315217--15315368	82	1.9	80	80	12	175	26	0	3	69	1.09
15315318--15315372	18	3.1	19	85	12	64	25	0	1	72	0.94
15315364--15315430	28	2.4	27	85	7	89	25	8	1	64	1.31
15315899--15315937	11	3.5	11	85	0	51	20	25	25	28	1.99
15316371--15316415	9	4.7	9	79	15	54	11	4	4	80	1.01
15316369--15316430	30	2.2	30	83	11	78	12	8	3	75	1.14
15316446--15317022	60	9.8	60	86	4	748	44	7	13	34	1.73
15321494--15321830	81	4.1	82	90	5	493	23	17	23	35	1.95
15321494--15321830	41	8.1	42	89	4	483	23	17	23	35	1.95
15321838--15321868	12	2.6	12	100	0	62	93	6	0	0	0.35
15322149--15322202	3	18.7	3	78	17	53	31	0	0	68	0.90
15322146--15322191	22	2.0	23	91	4	76	32	0	0	67	0.91
15322214--15322281	28	2.4	27	85	7	91	25	8	1	64	1.30
15323126--15323261	12	11.2	11	70	20	76	14	4	2	78	1.00
15323206--15323258	10	5.9	9	81	14	65	11	3	0	84	0.73
15323212--15323254	18	2.4	18	92	0	68	11	4	0	83	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15323206--15323273	27	2.6	27	81	9	77	13	5	0	80	0.87
15323202--15323273	14	4.8	16	76	11	57	13	5	0	80	0.88
15323279--15323749	60	7.9	60	86	4	634	44	7	13	34	1.73
15323372--15323466	29	3.1	32	61	22	76	43	8	14	33	1.76
15323279--15323749	118	4.0	117	89	3	708	44	7	13	34	1.73
15324732--15324784	26	2.0	26	85	0	70	30	20	22	26	1.98
15325628--15325680	26	2.0	26	92	0	88	28	16	26	28	1.97
15324145--15329368	896	5.8	891	84	6	6406	25	23	24	25	2.00
15327403--15327503	26	3.9	26	94	0	175	27	17	26	27	1.98
15328347--15328399	26	2.0	26	89	7	81	28	16	24	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195