Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  195  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35861222--35862981
715
2.5
714
78
8
1644
41
8
9
41
1.67
35872256--35872374
54
2.2
53
77
4
123
21
19
19
39
1.93
35872746--35876930
181
23.3
181
76
6
3198
40
7
9
42
1.67
35872746--35876930
363
11.7
360
76
7
3160
40
7
9
42
1.67
35872746--35881756
721
12.7
713
70
12
3807
40
8
9
41
1.67
35876798--35877046
133
1.9
133
83
5
324
39
6
8
44
1.61
35876931--35880914
181
22.3
180
74
10
2433
40
8
9
41
1.67
35878598--35878644
18
2.5
19
82
10
60
36
0
2
61
1.08
35878614--35878653
18
2.3
17
87
12
55
40
2
5
52
1.37
35876931--35881689
362
13.3
359
73
11
2400
40
8
9
41
1.67
35879425--35879457
16
2.0
17
88
5
50
42
3
12
42
1.57
35880927--35881729
182
4.5
177
78
7
681
41
8
9
40
1.68
35880926--35881729
356
2.2
354
78
6
821
41
8
9
40
1.68
35881766--35882163
176
2.2
180
82
6
463
41
8
9
40
1.68
35882276--35885059
180
15.3
180
73
10
1709
39
8
10
41
1.70
35882946--35884422
755
2.0
751
87
2
2004
40
8
10
40
1.70
35883703--35885041
541
2.5
533
83
5
1577
40
8
9
41
1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195

The End!