genome.fa.s112.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  178  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30037653--30037721	36	1.9	36	90	0	111	30	23	11	34	1.90
30041295--30041367	36	2.0	36	86	5	101	41	9	19	30	1.83
30051613--30051654	21	2.0	21	85	0	57	50	0	0	50	1.00
30051773--30051826	27	2.0	27	100	0	108	18	25	33	22	1.97
30053163--30053199	15	2.4	16	86	13	51	67	0	0	32	0.91
30054859--30054949	31	3.0	31	80	6	107	50	3	3	42	1.35
30056004--30056062	31	1.9	31	89	3	93	33	3	6	55	1.43
30056025--30056092	26	2.7	24	80	8	73	42	1	4	51	1.31
30058619--30058698	31	2.6	30	80	11	90	50	6	0	43	1.27
30060366--30060415	20	2.5	21	93	6	86	50	0	0	50	1.00
30060388--30060442	14	3.7	16	81	13	64	54	0	0	45	0.99
30060405--30060443	8	4.9	8	87	0	60	58	0	0	41	0.98
30070638--30070681	22	2.0	22	100	0	88	27	36	13	22	1.92
30075992--30076024	2	16.5	2	93	0	57	0	45	3	51	1.16
30081458--30081519	4	16.0	4	74	15	51	51	0	1	46	1.10
30081459--30081520	31	2.0	31	87	0	88	53	0	1	45	1.10
30082644--30082719	3	25.3	3	69	15	50	2	34	2	60	1.24
30082646--30082710	24	2.8	23	75	9	69	1	35	3	60	1.22
30082656--30082729	39	1.9	38	83	2	94	2	36	2	58	1.27
30094559--30094612	26	2.1	26	82	0	63	59	1	5	33	1.31
30100616--30100667	26	2.0	25	92	3	86	50	5	7	36	1.55
30101157--30101226	35	2.0	35	94	0	122	20	20	22	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30103311--30103350	20	2.0	20	85	5	53	45	0	0	55	0.99
30109280--30109308	14	2.0	15	93	6	51	0	27	10	62	1.28
30117213--30117240	6	4.7	6	100	0	56	32	14	35	17	1.90
30119162--30119307	72	2.0	72	97	0	274	23	8	10	57	1.59
30121449--30121493	17	2.6	17	78	3	54	44	11	2	42	1.52
30133882--30133974	49	1.9	48	89	6	143	40	8	15	35	1.77
30134431--30134494	31	2.1	31	88	5	96	32	12	1	53	1.48
30134159--30134722	297	1.9	298	88	3	855	48	9	6	35	1.62
30134794--30134837	22	2.0	21	86	4	61	65	0	0	34	0.93
30134856--30134914	30	2.0	30	86	0	82	35	5	3	55	1.38
30143510--30143549	20	2.1	18	90	9	62	87	7	2	2	0.71
30144546--30144583	20	1.9	20	88	0	58	42	0	0	57	0.98
30144661--30144778	32	3.8	31	75	13	77	47	5	4	43	1.45
30153213--30153285	14	5.9	13	77	19	61	72	8	2	16	1.20
30153209--30153263	24	2.3	24	96	0	101	74	9	3	12	1.18
30153209--30153283	11	6.3	11	76	21	71	74	8	2	14	1.15
30154270--30154294	10	2.5	10	100	0	50	16	0	0	84	0.63
30156078--30156104	7	3.9	7	100	0	54	88	0	0	11	0.50
30166674--30166916	96	2.5	96	83	4	283	30	12	19	37	1.89
30166676--30166903	48	4.7	49	79	5	248	30	12	20	36	1.90
30167158--30167211	24	2.2	25	83	9	67	77	3	5	12	1.07
30167257--30167316	29	2.1	29	87	0	84	20	51	5	23	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30170500--30170556	26	2.3	23	88	8	78	59	1	1	36	1.18
30176746--30176779	15	2.3	15	89	0	50	32	2	8	55	1.45
30177348--30177407	24	2.5	23	79	12	59	31	3	0	65	1.09
30177348--30177407	25	2.5	24	81	7	77	31	3	0	65	1.09
30177370--30177403	17	1.9	18	88	5	52	29	2	0	67	1.05
30177399--30177468	23	3.0	24	76	13	67	54	2	1	41	1.24
30178112--30178145	2	17.0	2	93	0	59	0	52	0	47	1.00
30180405--30180453	2	25.5	2	87	8	75	53	0	2	44	1.12
30180405--30180454	20	2.5	21	93	6	86	52	0	4	44	1.20
30180828--30180868	19	2.2	19	86	8	57	48	4	0	46	1.23
30181532--30181578	14	3.5	13	83	11	60	42	0	2	55	1.12
30183599--30183641	21	2.1	21	86	4	61	46	9	2	41	1.48
30192950--30192991	20	2.0	21	86	4	59	47	2	0	50	1.14
30192955--30192999	20	2.2	20	84	0	54	55	0	0	44	0.99
30202566--30202599	3	11.3	3	93	0	59	70	0	0	29	0.87
30204823--30204874	23	2.3	23	86	0	68	23	9	11	55	1.64
30206655--30206701	22	2.1	22	88	7	69	29	2	23	44	1.65
30209573--30209632	28	2.1	28	84	0	75	46	0	0	53	1.00
30212221--30212254	17	2.0	17	100	0	68	52	11	5	29	1.61
30216103--30216158	29	2.0	29	86	6	80	28	12	0	58	1.34
30217761--30217800	17	2.2	18	91	8	64	22	2	0	75	0.93
30223163--30223197	5	7.0	5	90	9	54	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30225963--30226049	36	2.4	36	88	1	122	39	3	21	35	1.71
30235628--30235884	128	2.0	128	98	0	496	35	26	6	32	1.81
30237162--30237211	23	2.2	23	85	7	66	42	0	2	56	1.11
30237387--30237488	51	2.0	51	92	0	168	35	18	12	33	1.89
30245237--30245274	15	2.4	16	86	4	51	50	7	2	39	1.46
30245669--30245717	23	2.1	23	85	7	64	71	0	4	24	1.03
30252826--30252861	2	18.0	2	88	0	54	44	0	0	55	0.99
30253571--30253596	13	2.0	13	100	0	52	38	15	7	38	1.76
30262694--30262724	3	10.3	3	100	0	62	35	0	32	32	1.58
30262779--30262920	70	2.0	70	100	0	284	47	12	9	30	1.74
30263388--30263418	2	15.5	2	93	0	53	48	0	3	48	1.17
30269067--30269098	2	16.0	2	100	0	64	50	0	0	50	1.00
30270412--30270503	47	2.0	47	97	0	175	48	4	11	34	1.60
30272951--30272997	23	2.1	21	85	14	60	46	4	4	44	1.42
30273126--30273228	51	2.1	47	84	13	129	33	6	1	57	1.36
30273153--30273300	48	3.0	49	83	10	169	29	8	2	59	1.40
30273339--30273448	55	1.9	58	85	5	154	35	6	3	54	1.43
30274827--30274988	78	2.1	79	88	3	238	50	15	15	19	1.79
30274768--30275065	164	1.8	165	83	6	399	48	14	16	20	1.80
30274781--30275168	86	4.6	85	76	10	350	47	13	16	21	1.82
30286604--30286655	23	2.2	24	82	3	61	40	5	5	48	1.51
30286830--30287112	62	4.8	58	75	12	231	38	9	6	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30286940--30287087	60	2.4	62	84	6	196	37	9	7	45	1.65
30287101--30287142	13	3.2	13	80	12	50	28	2	9	59	1.41
30287261--30287292	4	8.5	4	86	13	50	78	0	0	21	0.76
30288264--30288352	30	3.0	30	81	6	92	50	4	8	35	1.54
30288882--30288952	19	4.1	19	67	18	55	12	5	5	76	1.15
30288893--30288945	25	2.2	24	89	3	79	13	3	5	77	1.09
30289881--30289931	11	4.0	13	73	21	54	64	0	0	35	0.94
30290103--30290152	14	3.8	13	76	15	50	32	0	0	68	0.90
30290096--30290154	25	2.3	27	77	17	70	33	0	0	66	0.92
30290103--30290165	25	2.6	22	78	14	63	33	0	0	66	0.92
30292066--30292189	51	2.4	52	86	1	169	38	7	24	29	1.82
30292674--30292754	31	2.6	31	92	0	135	29	22	23	24	1.99
30292887--30292922	18	2.0	18	89	10	56	38	11	27	22	1.88
30293145--30293298	51	3.0	51	83	3	175	42	8	22	26	1.82
30300276--30300346	26	2.7	26	76	4	72	43	8	1	46	1.42
30301362--30301422	30	2.1	28	82	11	70	70	3	4	21	1.21
30301861--30301950	31	2.9	31	83	6	94	33	10	8	47	1.68
30301953--30302037	32	2.7	31	78	5	89	35	9	15	40	1.79
30301961--30302032	16	4.5	17	72	10	62	37	6	13	41	1.72
30301862--30302032	88	2.0	87	81	5	202	33	9	11	44	1.74
30302429--30302491	23	2.7	23	69	7	56	50	15	3	30	1.60
30303426--30303460	16	2.2	16	89	0	52	20	2	0	77	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30303847--30303875	14	2.0	15	93	6	51	13	10	0	75	1.04
30308655--30308696	11	3.8	11	87	0	66	23	0	26	50	1.50
30308654--30308696	22	2.0	22	95	0	77	25	0	25	48	1.51
30308721--30308877	52	3.0	52	87	1	208	39	9	25	25	1.86
30309803--30309836	4	8.5	4	87	12	52	76	0	0	23	0.79
30309801--30309875	13	6.0	13	74	16	61	73	5	2	18	1.15
30309803--30309853	20	2.5	20	84	9	59	74	3	1	19	1.07
30310569--30310615	24	1.9	24	86	4	67	51	10	2	36	1.49
30310728--30310844	21	5.7	21	76	11	134	50	12	7	29	1.68
30310711--30311023	41	7.8	41	78	10	317	51	11	6	30	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195